Pregenerated sensors for LINC02006 (Homo sapiens)
Ensembl gene IDs: ENSG00000238755Ensembl transcript IDs: ENST00000488210.1, ENST00000492569.1, ENST00000493214.2
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGTAGGGGTACTCAGGACTTTGAATGCATAGGCTCAGTTCTGCTGTaGACTTTCTACACAAATCCTGACCAAGCCTGTAGTCCCAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: CRGTQDFECIGSVLL*TFYTNPDQACSPSC Trigger: GCAGCTGGGACTACAGGCTTGGTCAGGATTTGTGTAGAAAGTGCACAGCAGAACTGAGCCTATGCATTCAAAGTCCTGAGTACCCCTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000493214.2 |
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| CDS GCA 90 bp | TCACAGCAGGAATCTAGCTTTTGTGTTCTGAAGTACCAGCTTTATTaGAGCGGATCCCCAGGCAGGCCATTTCTGCATGGCATCACAGTG | + |
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Preference number: 5 (lower is better) Translates to: SQQESSFCVLKYQLY*SGSPGRPFLHGITV Trigger: CACTGTGATGCCATGCAGAAATGGCCTGCCTGGGGATCCGCTGCAATAAAGCTGGTACTTCAGAACACAAAAGCTAGATTCCTGCTGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000488210.1 |
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| CDS TCA 90 bp | CATGTTCAGACAGAGCTCACTGAAATCATAGCACAGGCCCTTCCTTaGGAAAGGGCTACTGATCTACCTCTCCGAGCAACTGCTTGTAAA | + |
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Preference number: 5 (lower is better) Translates to: HVQTELTEIIAQALP*ERATDLPLRATACK Trigger: TTTACAAGCAGTTGCTCGGAGAGGTAGATCAGTAGCCCTTTCTCAAGGAAGGGCCTGTGCTATGATTTCAGTGAGCTCTGTCTGAACATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492569.1 |
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| CDS GCA 90 bp | TGTAGGGGTACTCAGGACTTTGAATGCATAGGCTCAGTTCTGCTGTaGACTTTCTACACAAATCCTGACCAAGCCTGTGAGTATGGGCAA | + |
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Preference number: 5 (lower is better) Translates to: CRGTQDFECIGSVLL*TFYTNPDQACEYGQ Trigger: TTGCCCATACTCACAGGCTTGGTCAGGATTTGTGTAGAAAGTGCACAGCAGAACTGAGCCTATGCATTCAAAGTCCTGAGTACCCCTACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492569.1 |
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| CDS TCA 90 bp | TGGATCATTCTCTGTTCCCAAGCCCATCTGTGTTCTGTTGGCAGCTaGGAGATTGCATACTGTAATCTCTCTCTCTCTGATGTATGTCTT | + |
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Preference number: 5 (lower is better) Translates to: WIILCSQAHLCSVGS*EIAYCNLSLSDVCL Trigger: AAGACATACATCAGAGAGAGAGAGATTACAGTATGCAATCTCTCAGCTGCCAACAGAACACAGATGGGCTTGGGAACAGAGAATGATCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000492569.1 ENST00000493214.2 |
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| CDS TCA 90 bp | GGGCTACTGATCTACCTCTCCGAGCAACTGCTTGTAAAGACAAACTaGATTGAATGGGCAAGTGATTTTCAAACCAGTTACGGATATTAC | + |
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Preference number: 5 (lower is better) Translates to: GLLIYLSEQLLVKTN*IEWASDFQTSYGYY Trigger: GTAATATCCGTAACTGGTTTGAAAATCACTTGCCCATTCAATTCAGTTTGTCTTTACAAGCAGTTGCTCGGAGAGGTAGATCAGTAGCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492569.1 |
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| CDS TCA 90 bp | AGTATGGGCAAATATTTATTCAGACCAATAGGTAGACTTTGGCATTaGCCTGGCATCAAGACCGCCCAAAGTAGTTGCTGTTCTATATAT | + |
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Preference number: 5 (lower is better) Translates to: SMGKYLFRPIGRLWH*PGIKTAQSSCCSIY Trigger: ATATATAGAACAGCAACTACTTTGGGCGGTCTTGATGCCAGGTCAATGCCAAAGTCTACCTATTGGTCTGAATAAATATTTGCCCATACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492569.1 |
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| CDS GCA 90 bp | TTCTCAGGTTGGTCCTGGAGATCAAAATGTCTTTATTCAAGGGCATaGAGGCAAAAGAACAAGCATATCTATCATGGAACATTCAATAGT | + |
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Preference number: 5 (lower is better) Translates to: FSGWSWRSKCLYSRA*RQKNKHIYHGTFNS Trigger: ACTATTGAATGTTCCATGATAGATATGCTTGTTCTTTTGCCTGCATGCCCTTGAATAAAGACATTTTGATCTCCAGGACCAACCTGAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000492569.1 ENST00000493214.2 |
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| CDS CCA 90 bp | TGTGGACATGCTGAAAGAGATCACATTCTTGAAATGCATTCATTATaGCCTTTATGCTTTCATGCTGAGACTTTAATATACCTCTTTCAG | + |
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Preference number: 5 (lower is better) Translates to: CGHAERDHILEMHSL*PLCFHAETLIYLFQ Trigger: CTGAAAGAGGTATATTAAAGTCTCAGCATGAAAGCATAAAGGCCATAATGAATGCATTTCAAGAATGTGATCTCTTTCAGCATGTCCACA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000493214.2 |
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| CDS CCA 90 bp | GTATGTCTTCTCATAAAATATGGTCTTGGATTTCAGGACAATCCTTaGTATGAGGGAATATTTTTCATTTGTGTCCTCTTCCTTTGTAGG | + |
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Preference number: 5 (lower is better) Translates to: VCLLIKYGLGFQDNP*YEGIFFICVLFLCR Trigger: CCTACAAAGGAAGAGGACACAAATGAAAAATATTCCCTCATACCAAGGATTGTCCTGAAATCCAAGACCATATTTTATGAGAAGACATAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000492569.1 ENST00000493214.2 |
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| CDS CCA 72 bp | ATTTCTGCATGGCATCACAGTGATCCATCGAGAGGGTaGACAGAGGAATCAGAGGGCAGGGGTGAACACCAC | + |
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Preference number: 6 (lower is better) Translates to: ISAWHHSDPSRG*TEESEGRGEHH Trigger: GTGGTGTTCACCCCTGCCCTCTGATTCCTCTGTCCACCCTCTCGATGGATCACTGTGATGCCATGCAGAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000488210.1 |
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| CDS GCA 72 bp | TCTTCTGTCCAAACTTCCCACGGATTGCTCCAGTCCTaGAGATCTGGATCATTCTCTGTTCCCAAGCCCATC | + |
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Preference number: 6 (lower is better) Translates to: SSVQTSHGLLQS*RSGSFSVPKPI Trigger: GATGGGCTTGGGAACAGAGAATGATCCAGATCTGCAGGACTGGAGCAATCCGTGGGAAGTTTGGACAGAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000492569.1 ENST00000493214.2 |
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| CDS CAA 90 bp | AGAGCGAGATTCCATCTCTCAGAGTGGGGCACTCACACCAGAGAGTaGCATCCTAGTTCCATCACTTACTACGAGACTCATTCACGTGGA | + |
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Preference number: 6 (lower is better) Translates to: RARFHLSEWGTHTRE*HPSSITYYETHSRG Trigger: TCCACGTGAATGAGTCTCGTAGTAAGTGATGGAACTAGGATGCAACTCTCTGGTGTGAGTGCCCCACTCTGAGAGATGGAATCTCGCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000493214.2 |
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| CDS TCA 72 bp | ACAGAGCTCACTGAAATCATAGCACAGGCCCTTCCTTaGGAAAGGGCTACTGATCTACCTCTCCGAGCAACT | + |
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Preference number: 6 (lower is better) Translates to: TELTEIIAQALP*ERATDLPLRAT Trigger: AGTTGCTCGGAGAGGTAGATCAGTAGCCCTTTCTCAAGGAAGGGCCTGTGCTATGATTTCAGTGAGCTCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492569.1 |
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| CDS GCA 72 bp | GAATCTAGCTTTTGTGTTCTGAAGTACCAGCTTTATTaGAGCGGATCCCCAGGCAGGCCATTTCTGCATGGC | + |
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Preference number: 6 (lower is better) Translates to: ESSFCVLKYQLY*SGSPGRPFLHG Trigger: GCCATGCAGAAATGGCCTGCCTGGGGATCCGCTGCAATAAAGCTGGTACTTCAGAACACAAAAGCTAGATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000488210.1 |
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| CDS CAA 90 bp | TGCAGATCTGGATCATTCTCTGTTCCCAAGCCCATCTGTGTTCTGTaGGCAGCTGAGAGATTGCATACTGTAATCTCTCTCTCTCTGATG | + |
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Preference number: 6 (lower is better) Translates to: CRSGSFSVPKPICVL*AAERLHTVISLSLM Trigger: CATCAGAGAGAGAGAGATTACAGTATGCAATCTCTCAGCTGCCAACAGAACACAGATGGGCTTGGGAACAGAGAATGATCCAGATCTGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000492569.1 ENST00000493214.2 |
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| CDS TCA 72 bp | CTCTGTTCCCAAGCCCATCTGTGTTCTGTTGGCAGCTaGGAGATTGCATACTGTAATCTCTCTCTCTCTGAT | + |
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Preference number: 6 (lower is better) Translates to: LCSQAHLCSVGS*EIAYCNLSLSD Trigger: ATCAGAGAGAGAGAGATTACAGTATGCAATCTCTCAGCTGCCAACAGAACACAGATGGGCTTGGGAACAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000492569.1 ENST00000493214.2 |
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| CDS TCA 72 bp | TTGAGAAGTCACAGCAGGAATCTAGCTTTTGTGTTCTaGAGTACCAGCTTTATTGCAGCGGATCCCCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: LRSHSRNLAFVF*STSFIAADPQA Trigger: TGCCTGGGGATCCGCTGCAATAAAGCTGGTACTTCAGAACACAAAAGCTAGATTCCTGCTGTGACTTCTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000488210.1 |
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| CDS GCA 72 bp | GTCCTCTTCCTTTGTAGGGGTACTCAGGACTTTGAATaGATAGGCTCAGTTCTGCTGTGCACTTTCTACACA | + |
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Preference number: 6 (lower is better) Translates to: VLFLCRGTQDFE*IGSVLLCTFYT Trigger: TGTGTAGAAAGTGCACAGCAGAACTGAGCCTATGCATTCAAAGTCCTGAGTACCCCTACAAAGGAAGAGGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000492569.1 ENST00000493214.2 |
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| CDS GCA 72 bp | ACTCAGGACTTTGAATGCATAGGCTCAGTTCTGCTGTaGACTTTCTACACAAATCCTGACCAAGCCTGTGAG | + |
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Preference number: 6 (lower is better) Translates to: TQDFECIGSVLL*TFYTNPDQACE Trigger: CTCACAGGCTTGGTCAGGATTTGTGTAGAAAGTGCACAGCAGAACTGAGCCTATGCATTCAAAGTCCTGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492569.1 |
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| CDS CAA 72 bp | GGATCATTCTCTGTTCCCAAGCCCATCTGTGTTCTGTaGGCAGCTGAGAGATTGCATACTGTAATCTCTCTC | + |
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Preference number: 6 (lower is better) Translates to: GSFSVPKPICVL*AAERLHTVISL Trigger: GAGAGAGATTACAGTATGCAATCTCTCAGCTGCCAACAGAACACAGATGGGCTTGGGAACAGAGAATGATCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000492569.1 ENST00000493214.2 |
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| CDS GCA 72 bp | ACTCAGGACTTTGAATGCATAGGCTCAGTTCTGCTGTaGACTTTCTACACAAATCCTGACCAAGCCTGTAGT | + |
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Preference number: 6 (lower is better) Translates to: TQDFECIGSVLL*TFYTNPDQACS Trigger: ACTACAGGCTTGGTCAGGATTTGTGTAGAAAGTGCACAGCAGAACTGAGCCTATGCATTCAAAGTCCTGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000493214.2 |
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| CDS TCA 72 bp | AAATATTTATTCAGACCAATAGGTAGACTTTGGCATTaGCCTGGCATCAAGACCGCCCAAAGTAGTTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: KYLFRPIGRLWH*PGIKTAQSSCC Trigger: ACAGCAACTACTTTGGGCGGTCTTGATGCCAGGTCAATGCCAAAGTCTACCTATTGGTCTGAATAAATATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492569.1 |
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| CDS TCA 72 bp | ATCTACCTCTCCGAGCAACTGCTTGTAAAGACAAACTaGATTGAATGGGCAAGTGATTTTCAAACCAGTTAC | + |
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Preference number: 6 (lower is better) Translates to: IYLSEQLLVKTN*IEWASDFQTSY Trigger: GTAACTGGTTTGAAAATCACTTGCCCATTCAATTCAGTTTGTCTTTACAAGCAGTTGCTCGGAGAGGTAGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492569.1 |
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| CDS GCA 72 bp | GGTGTGGACATGCTGAAAGAGATCACATTCTTGAAATaGATTCATTATGGCCTTTATGCTTTCATGCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: GVDMLKEITFLK*IHYGLYAFMLR Trigger: TCTCAGCATGAAAGCATAAAGGCCATAATGAATGCATTTCAAGAATGTGATCTCTTTCAGCATGTCCACACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000493214.2 |
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| CDS CAA 72 bp | TTCAGAATCTCACATACAGTTTTAGGCAGAGAACTCTaGCTAGAAGTCCAACATTTTGAAGACATCTCCATC | + |
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Preference number: 6 (lower is better) Translates to: FRISHTVLGREL*LEVQHFEDISI Trigger: GATGGAGATGTCTTCAAAATGTTGGACTTCTAGCAAGAGTTCTCTGCCTAAAACTGTATGTGAGATTCTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000488210.1 |
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| CDS CCA 72 bp | CTCATAAAATATGGTCTTGGATTTCAGGACAATCCTTaGTATGAGGGAATATTTTTCATTTGTGTCCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: LIKYGLGFQDNP*YEGIFFICVLF Trigger: GAAGAGGACACAAATGAAAAATATTCCCTCATACCAAGGATTGTCCTGAAATCCAAGACCATATTTTATGAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000492569.1 ENST00000493214.2 |
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