Pregenerated sensors for LINC02005 (Homo sapiens)
Ensembl gene IDs: ENSG00000242741Ensembl transcript IDs: ENST00000498832.1, ENST00000659853.1, ENST00000664767.1, ENST00000670514.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ACCATGGGGTATCAGTTCCGCATGGCTGGGGAGGCCTCAGAATCATaGCGAGAGGTGAAAGACACTTCTTATATGGTGGCAGCAAGAGAG | + |
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Preference number: 5 (lower is better) Translates to: TMGYQFRMAGEASES*REVKDTSYMVAARE Trigger: CTCTCTTGCTGCCACCATATAAGAAGTGTCTTTCACCTCTCGCCATGATTCTGAGGCCTCCCCAGCCATGCGGAACTGATACCCCATGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659853.1 |
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| CDS TCA 90 bp | ATCAGTTCCGCATGGCTGGGGAGGCCTCAGAATCATGGCGAGAGGTaGAAGACACTTCTTATATGGTGGCAGCAAGAGAGAATGAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: ISSAWLGRPQNHGER*KTLLIWWQQERMRK Trigger: CTTCCTCATTCTCTCTTGCTGCCACCATATAAGAAGTGTCTTTCACCTCTCGCCATGATTCTGAGGCCTCCCCAGCCATGCGGAACTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659853.1 |
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| CDS TCA 90 bp | AGCTGGACTCAGACAGAATCTCATCTCTGCCACTTACTAGCTATCTaGTCTTGGGCAAGTAACATAATCTCTCTGAGCCTCAGCTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: SWTQTESHLCHLLAI*SWASNIISLSLSSS Trigger: AGAGGAGCTGAGGCTCAGAGAGATTATGTTACTTGCCCAAGATCAGATAGCTAGTAAGTGGCAGAGATGAGATTCTGTCTGAGTCCAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659853.1 ENST00000670514.1 |
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| CDS GCA 90 bp | CAATATGGCACCTCCACACGAGCTGGGTCCATAATCTTTAGTTGTTaGTCAACTGAAGAAAGCAAGGTCTGTTTCAGTGTTGGAGGAAAA | + |
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Preference number: 5 (lower is better) Translates to: QYGTSTRAGSIIFSC*STEESKVCFSVGGK Trigger: TTTTCCTCCAACACTGAAACAGACCTTGCTTTCTTCAGTTGAGCAACAACTAAAGATTATGGACCCAGCTCGTGTGGAGGTGCCATATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000498832.1 ENST00000664767.1 |
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| CDS CAA 72 bp | GCCAAGGTCAAGGGACTGCATCTGGTGAGGACCTTCTaGCTGGTAGAGAGACTCTGCAGAGTCCCAAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: AKVKGLHLVRTF*LVERLCRVPRQ Trigger: CTGCCTTGGGACTCTGCAGAGTCTCTCTACCAGCAAGAAGGTCCTCACCAGATGCAGTCCCTTGACCTTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659853.1 ENST00000670514.1 |
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| CDS GCA 72 bp | CATCTGGTGAGGACCTTCTTGCTGGTAGAGAGACTCTaGAGAGTCCCAAGGCAGTACAGAGCATCACATGGC | + |
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Preference number: 6 (lower is better) Translates to: HLVRTFLLVERL*RVPRQYRASHG Trigger: GCCATGTGATGCTCTGTACTGCCTTGGGACTCTGCAGAGTCTCTCTACCAGCAAGAAGGTCCTCACCAGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659853.1 ENST00000670514.1 |
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| CDS TCA 72 bp | GCATGGCTGGGGAGGCCTCAGAATCATGGCGAGAGGTaGAAGACACTTCTTATATGGTGGCAGCAAGAGAGA | + |
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Preference number: 6 (lower is better) Translates to: AWLGRPQNHGER*KTLLIWWQQER Trigger: TCTCTCTTGCTGCCACCATATAAGAAGTGTCTTTCACCTCTCGCCATGATTCTGAGGCCTCCCCAGCCATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659853.1 |
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| CDS TCA 72 bp | CCCAAGGCAGTACAGAGCATCACATGGCAAGGGCGCTaGGTGTTCTACCTCAGGTCTCTCTTCCTCTTCTTA | + |
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Preference number: 6 (lower is better) Translates to: PKAVQSITWQGR*VFYLRSLFLFL Trigger: TAAGAAGAGGAAGAGAGACCTGAGGTAGAACACTCAGCGCCCTTGCCATGTGATGCTCTGTACTGCCTTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659853.1 ENST00000670514.1 |
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| CDS CCA 72 bp | TATCAGTTCCGCATGGCTGGGGAGGCCTCAGAATCATaGCGAGAGGTGAAAGACACTTCTTATATGGTGGCA | + |
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Preference number: 6 (lower is better) Translates to: YQFRMAGEASES*REVKDTSYMVA Trigger: TGCCACCATATAAGAAGTGTCTTTCACCTCTCGCCATGATTCTGAGGCCTCCCCAGCCATGCGGAACTGATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659853.1 |
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| CDS TCA 72 bp | CAGACAGAATCTCATCTCTGCCACTTACTAGCTATCTaGTCTTGGGCAAGTAACATAATCTCTCTGAGCCTC | + |
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Preference number: 6 (lower is better) Translates to: QTESHLCHLLAI*SWASNIISLSL Trigger: GAGGCTCAGAGAGATTATGTTACTTGCCCAAGATCAGATAGCTAGTAAGTGGCAGAGATGAGATTCTGTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659853.1 ENST00000670514.1 |
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| CDS CCA 72 bp | TTTTCTATCCAGCCCGATTGTCAAGAATATCAGTTATaGTGTAAGCTGGACTCAGACAGAATCTCATCTCTG | + |
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Preference number: 6 (lower is better) Translates to: FSIQPDCQEYQL*CKLDSDRISSL Trigger: CAGAGATGAGATTCTGTCTGAGTCCAGCTTACACCATAACTGATATTCTTGACAATCGGGCTGGATAGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000659853.1 ENST00000670514.1 |
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| CDS CAA 90 bp | AAGGTCTGTTTCAGTGTTGGAGGAAAACTGACTCTGTTGGACTCGTaGAGAAATTCAATATCAGTTTCCAATGTGGTAGCCAATTTTGCA | + |
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Preference number: 6 (lower is better) Translates to: KVCFSVGGKLTLLDS*RNSISVSNVVANFA Trigger: TGCAAAATTGGCTACCACATTGGAAACTGATATTGAATTTCTCAACGAGTCCAACAGAGTCAGTTTTCCTCCAACACTGAAACAGACCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000498832.1 ENST00000664767.1 |
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| CDS CAA 72 bp | ATTTATGCAGTAATCTTTCAGGAGCTCCTGAAAAACTaGCAAGTAGTGACCAACCAACCATTCATTCACAGG | + |
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Preference number: 6 (lower is better) Translates to: IYAVIFQELLKN*QVVTNQPFIHR Trigger: CCTGTGAATGAATGGTTGGTTGGTCACTACTTGCAAGTTTTTCAGGAGCTCCTGAAAGATTACTGCATAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000498832.1 ENST00000659853.1 ENST00000664767.1 ENST00000670514.1 |
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| CDS CAA 72 bp | TCCATGTTAAAGACCCCACCTATCAGTACTGTTACTTaGGGGATTAAGTTTCAACATGAGCTTTGGAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: SMLKTPPISTVT*GIKFQHELWKE Trigger: TTCCTTCCAAAGCTCATGTTGAAACTTAATCCCCAAAGTAACAGTACTGATAGGTGGGGTCTTTAACATGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000659853.1 ENST00000670514.1 |
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