Pregenerated sensors for LINC02002 (Homo sapiens)
Ensembl gene IDs: ENSG00000263609Ensembl transcript IDs: ENST00000578977.1, ENST00000579836.1, ENST00000580507.1, ENST00000653536.1, ENST00000656051.1, ENST00000656149.1, ENST00000659671.1, ENST00000659967.1, ENST00000660505.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AACAGTGTATCCTACCTGCTGAACCAAAATAATGGTTTAGCCCTGTaGGATGAATCCACAGATCTCAAAGCATGTTCACAGATAGCTTGT | + |
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Preference number: 5 (lower is better) Translates to: NSVSYLLNQNNGLAL*DESTDLKACSQIAC Trigger: ACAAGCTATCTGTGAACATGCTTTGAGATCTGTGGATTCATCTCACAGGGCTAAACCATTATTTTGGTTCAGCAGGTAGGATACACTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659967.1 |
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| CDS GCA 90 bp | CAAAGCATGTTCACAGATAGCTTGTTTCTAGTTTTTATCATGGAATaGTTGGTTTCTCATTATAGGCTTCACTGGGCTCTAAAATATCCA | + |
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Preference number: 5 (lower is better) Translates to: QSMFTDSLFLVFIME*LVSHYRLHWALKYP Trigger: TGGATATTTTAGAGCCCAGTGAAGCCTATAATGAGAAACCAAGCATTCCATGATAAAAACTAGAAACAAGCTATCTGTGAACATGCTTTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000659967.1 |
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| CDS CCA 90 bp | TCAGTTTTCATTGTGAAACAATCAGTGTTTCACTATAGGTCTCAATaGGTTCCAAAATGTCCCTTCGTAGATTCTACAAATAAGGTGTTT | + |
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Preference number: 5 (lower is better) Translates to: SVFIVKQSVFHYRSQ*VPKCPFVDSTNKVF Trigger: AAACACCTTATTTGTAGAATCTACGAAGGGACATTTTGGAACCCATTGAGACCTATAGTGAAACACTGATTGTTTCACAATGAAAACTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000578977.1 ENST00000653536.1 ENST00000656051.1 ENST00000656149.1 ENST00000660505.1 |
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| CDS TCA 72 bp | TCCTACCTGCTGAACCAAAATAATGGTTTAGCCCTGTaGGATGAATCCACAGATCTCAAAGCATGTTCACAG | + |
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Preference number: 6 (lower is better) Translates to: SYLLNQNNGLAL*DESTDLKACSQ Trigger: CTGTGAACATGCTTTGAGATCTGTGGATTCATCTCACAGGGCTAAACCATTATTTTGGTTCAGCAGGTAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659967.1 |
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| CDS TCA 72 bp | TCCAACCTGCTGTATGTAAGTAAGTGTTTACCTCTGTaGGACAAATCTTCACATTGCAAAGCATTTTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: SNLLYVSKCLPL*DKSSHCKAFSP Trigger: TGGGGAAAATGCTTTGCAATGTGAAGATTTGTCTCACAGAGGTAAACACTTACTTACATACAGCAGGTTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000579836.1 |
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| CDS TCA 72 bp | TCGATTGTACCAAAGGAGAGTTTCCAATTTCCTGTCTaGGTAGAATCTACACACGCAAAGCATTTTCCTAGA | + |
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Preference number: 6 (lower is better) Translates to: SIVPKESFQFPV*VESTHAKHFPR Trigger: TCTAGGAAAATGCTTTGCGTGTGTAGATTCTACTCAGACAGGAAATTGGAAACTCTCCTTTGGTACAATCGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000578977.1 ENST00000660505.1 |
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| CDS TCA 72 bp | GCCAGCCAGCTGAATCAATACAAACGTTTAACTCTGTaGGATAAATCTTCCATCACAAAGCATTTTCACAGA | + |
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Preference number: 6 (lower is better) Translates to: ASQLNQYKRLTL*DKSSITKHFHR Trigger: TCTGTGAAAATGCTTTGTGATGGAAGATTTATCTCACAGAGTTAAACGTTTGTATTGATTCAGCTGGCTGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000578977.1 ENST00000580507.1 ENST00000653536.1 ENST00000656051.1 ENST00000656149.1 ENST00000659671.1 ENST00000659967.1 ENST00000660505.1 |
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| CDS TCA 72 bp | GAGCTCCAAAATGTCTTAGAGTATTTCAAACCTGTCTaGGTAGAATCTACACACGCAAAGCATTTTCCTAGA | + |
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Preference number: 6 (lower is better) Translates to: ELQNVLEYFKPV*VESTHAKHFPR Trigger: TCTAGGAAAATGCTTTGCGTGTGTAGATTCTACTCAGACAGGTTTGAAATACTCTAAGACATTTTGGAGCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000653536.1 ENST00000656051.1 ENST00000656149.1 ENST00000659967.1 |
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| CDS CAA 90 bp | AGCATGTTCACAGATAGCTTGTTTCTAGTTTTTATCATGGAATGCTaGGTTTCTCATTATAGGCTTCACTGGGCTCTAAAATATCCATTC | + |
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Preference number: 6 (lower is better) Translates to: SMFTDSLFLVFIMEC*VSHYRLHWALKYPF Trigger: GAATGGATATTTTAGAGCCCAGTGAAGCCTATAATGAGAAACCAAGCATTCCATGATAAAAACTAGAAACAAGCTATCTGTGAACATGCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000659967.1 |
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| CDS CCA 72 bp | ATTGTGAAACAATCAGTGTTTCACTATAGGTCTCAATaGGTTCCAAAATGTCCCTTCGTAGATTCTACAAAT | + |
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Preference number: 6 (lower is better) Translates to: IVKQSVFHYRSQ*VPKCPFVDSTN Trigger: ATTTGTAGAATCTACGAAGGGACATTTTGGAACCCATTGAGACCTATAGTGAAACACTGATTGTTTCACAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000578977.1 ENST00000653536.1 ENST00000656051.1 ENST00000656149.1 ENST00000660505.1 |
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| CDS CAA 72 bp | ACAGATAGCTTGTTTCTAGTTTTTATCATGGAATGCTaGGTTTCTCATTATAGGCTTCACTGGGCTCTAAAA | + |
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Preference number: 6 (lower is better) Translates to: TDSLFLVFIMEC*VSHYRLHWALK Trigger: TTTTAGAGCCCAGTGAAGCCTATAATGAGAAACCAAGCATTCCATGATAAAAACTAGAAACAAGCTATCTGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659967.1 |
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| CDS TCA 72 bp | CCAAACTTGCTGAATAAATGCAGAGGTTTAAATTTGTaGCATGAATCCACATATTGCACAGCATTTTTACTG | + |
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Preference number: 6 (lower is better) Translates to: PNLLNKCRGLNL*HESTYCTAFLL Trigger: CAGTAAAAATGCTGTGCAATATGTGGATTCATGTCACAAATTTAAACCTCTGCATTTATTCAGCAAGTTTGG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000578977.1 ENST00000656051.1 ENST00000656149.1 ENST00000659671.1 ENST00000659967.1 ENST00000660505.1 |
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