Pregenerated sensors for LINC02000 (Homo sapiens)
Ensembl gene IDs: ENSG00000243832Ensembl transcript IDs: ENST00000483245.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GAGAGTTACAGCTTGGTGTGCTTGGGGAAGTCACAGCTTCTCTCCTaGATGGGCTGGCTGATCACAGCAATTGGCATGGATCCACAGGCA | + |
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Preference number: 5 (lower is better) Translates to: ESYSLVCLGKSQLLS*MGWLITAIGMDPQA Trigger: TGCCTGTGGATCCATGCCAATTGCTGTGATCAGCCAGCCCATCCAGGAGAGAAGCTGTGACTTCCCCAAGCACACCAAGCTGTAACTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS CCA 90 bp | TGCTTTCTCATCAGCCCAAATGACAGGACCCAGAGAGTTACAGCTTaGTGTGCTTGGGGAAGTCACAGCTTCTCTCCTGGATGGGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: CFLISPNDRTQRVTA*CAWGSHSFSPGWAG Trigger: GCCAGCCCATCCAGGAGAGAAGCTGTGACTTCCCCAAGCACACCAAGCTGTAACTCTCTGGGTCCTGTCATTTGGGCTGATGAGAAAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS GCA 90 bp | TGGTCATGGTGTCATCCTTGCTTGTGTGCAATGTCAAAAGGTGGATaGTCTCCTCATGCTGTCTTCACTGGGCTTGCCTTCTCTACCTGC | + |
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Preference number: 5 (lower is better) Translates to: WSWCHPCLCAMSKGG*SPHAVFTGLAFSTC Trigger: GCAGGTAGAGAAGGCAAGCCCAGTGAAGACAGCATGAGGAGAGCATCCACCTTTTGACATTGCACACAAGCAAGGATGACACCATGACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS TCA 90 bp | ATGAATCATGTCTCTCCTCGGAAGCTGCTTTCTCATCAGCCCAAATaGCAGGACCCAGAGAGTTACAGCTTGGTGTGCTTGGGGAAGTCA | + |
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Preference number: 5 (lower is better) Translates to: MNHVSPRKLLSHQPK*QDPESYSLVCLGKS Trigger: TGACTTCCCCAAGCACACCAAGCTGTAACTCTCTGGGTCCTGTCATTTGGGCTGATGAGAAAGCAGCTTCCGAGGAGAGACATGATTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS GCA 90 bp | AAAAGTCCAGCTCTGCCCTTTCAAAGATGGTCATGGTGTCATCCTTaGTTGTGTGCAATGTCAAAAGGTGGATGCTCTCCTCATGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: KSPALPFQRWSWCHP*LCAMSKGGCSPHAV Trigger: GACAGCATGAGGAGAGCATCCACCTTTTGACATTGCACACAAGCAAGGATGACACCATGACCATCTTTGAAAGGGCAGAGCTGGACTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS CCA 90 bp | ATCAATACTTGGCCTGAAAGCTGGCTCTCACATGAATCGTCTCTTTaGATGAATCATGTCTCTCCTCGGAAGCTGCTTTCTCATCAGCCC | + |
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Preference number: 5 (lower is better) Translates to: INTWPESWLSHESSL*MNHVSPRKLLSHQP Trigger: GGGCTGATGAGAAAGCAGCTTCCGAGGAGAGACATGATTCATCCAAAGAGACGATTCATGTGAGAGCCAGCTTTCAGGCCAAGTATTGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS CCA 90 bp | TGGCCAATCAGCCAGATGTCTCCCATCAATACTTGGCCTGAAAGCTaGCTCTCACATGAATCGTCTCTTTGGATGAATCATGTCTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: WPISQMSPINTWPES*LSHESSLWMNHVSP Trigger: AGGAGAGACATGATTCATCCAAAGAGACGATTCATGTGAGAGCCAGCTTTCAGGCCAAGTATTGATGGGAGACATCTGGCTGATTGGCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS CCA 90 bp | TCTACCTGCTGTTGGCCAATCAGCCAGATGTCTCCCATCAATACTTaGCCTGAAAGCTGGCTCTCACATGAATCGTCTCTTTGGATGAAT | + |
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Preference number: 5 (lower is better) Translates to: STCCWPISQMSPINT*PESWLSHESSLWMN Trigger: ATTCATCCAAAGAGACGATTCATGTGAGAGCCAGCTTTCAGGCCAAGTATTGATGGGAGACATCTGGCTGATTGGCCAACAGCAGGTAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS TCA 90 bp | ATACTTGGCCTGAAAGCTGGCTCTCACATGAATCGTCTCTTTGGATaGATCATGTCTCTCCTCGGAAGCTGCTTTCTCATCAGCCCAAAT | + |
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Preference number: 5 (lower is better) Translates to: ILGLKAGSHMNRLFG*IMSLLGSCFLISPN Trigger: ATTTGGGCTGATGAGAAAGCAGCTTCCGAGGAGAGACATGATTCATCCAAAGAGACGATTCATGTGAGAGCCAGCTTTCAGGCCAAGTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS CCA 90 bp | ATAATGTTATGCAAAAGTCCAGCTCTGCCCTTTCAAAGATGGTCATaGTGTCATCCTTGCTTGTGTGCAATGTCAAAAGGTGGATGCTCT | + |
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Preference number: 5 (lower is better) Translates to: IMLCKSPALPFQRWS*CHPCLCAMSKGGCS Trigger: AGAGCATCCACCTTTTGACATTGCACACAAGCAAGGATGACACCATGACCATCTTTGAAAGGGCAGAGCTGGACTTTTGCATAACATTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS TCA 72 bp | TGGGGAAGTCACAGCTTCTCTCCTGGATGGGCTGGCTaGTCACAGCAATTGGCATGGATCCACAGGCAGTCC | + |
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Preference number: 6 (lower is better) Translates to: WGSHSFSPGWAG*SQQLAWIHRQS Trigger: GGACTGCCTGTGGATCCATGCCAATTGCTGTGATCAGCCAGCCCATCCAGGAGAGAAGCTGTGACTTCCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS CCA 72 bp | TGCTTGGGGAAGTCACAGCTTCTCTCCTGGATGGGCTaGCTGATCACAGCAATTGGCATGGATCCACAGGCA | + |
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Preference number: 6 (lower is better) Translates to: CLGKSQLLSWMG*LITAIGMDPQA Trigger: TGCCTGTGGATCCATGCCAATTGCTGTGATCAGCCAGCCCATCCAGGAGAGAAGCTGTGACTTCCCCAAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS TCA 72 bp | GTCTCTCCTCGGAAGCTGCTTTCTCATCAGCCCAAATaGCAGGACCCAGAGAGTTACAGCTTGGTGTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: VSPRKLLSHQPK*QDPESYSLVCL Trigger: CAAGCACACCAAGCTGTAACTCTCTGGGTCCTGTCATTTGGGCTGATGAGAAAGCAGCTTCCGAGGAGAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS GCA 72 bp | TGTCATCCTTGCTTGTGTGCAATGTCAAAAGGTGGATaGTCTCCTCATGCTGTCTTCACTGGGCTTGCCTTC | + |
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Preference number: 6 (lower is better) Translates to: CHPCLCAMSKGG*SPHAVFTGLAF Trigger: GAAGGCAAGCCCAGTGAAGACAGCATGAGGAGAGCATCCACCTTTTGACATTGCACACAAGCAAGGATGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS CAA 90 bp | AGTCCAGCTCTGCCCTTTCAAAGATGGTCATGGTGTCATCCTTGCTaGTGTGCAATGTCAAAAGGTGGATGCTCTCCTCATGCTGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: SPALPFQRWSWCHPC*CAMSKGGCSPHAVF Trigger: GAAGACAGCATGAGGAGAGCATCCACCTTTTGACATTGCACACAAGCAAGGATGACACCATGACCATCTTTGAAAGGGCAGAGCTGGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS GCA 72 bp | GCTCTGCCCTTTCAAAGATGGTCATGGTGTCATCCTTaGTTGTGTGCAATGTCAAAAGGTGGATGCTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: ALPFQRWSWCHP*LCAMSKGGCSP Trigger: AGGAGAGCATCCACCTTTTGACATTGCACACAAGCAAGGATGACACCATGACCATCTTTGAAAGGGCAGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS CCA 72 bp | TGGCCTGAAAGCTGGCTCTCACATGAATCGTCTCTTTaGATGAATCATGTCTCTCCTCGGAAGCTGCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: WPESWLSHESSL*MNHVSPRKLLS Trigger: AGAAAGCAGCTTCCGAGGAGAGACATGATTCATCCAAAGAGACGATTCATGTGAGAGCCAGCTTTCAGGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS CAA 90 bp | CAAAAGTCCAGCTCTGCCCTTTCAAAGATGGTCATGGTGTCATCCTaGCTTGTGTGCAATGTCAAAAGGTGGATGCTCTCCTCATGCTGT | + |
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Preference number: 6 (lower is better) Translates to: QKSSSALSKMVMVSS*LVCNVKRWMLSSCC Trigger: ACAGCATGAGGAGAGCATCCACCTTTTGACATTGCACACAAGCAAGGATGACACCATGACCATCTTTGAAAGGGCAGAGCTGGACTTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS TCA 72 bp | CTGAAAGCTGGCTCTCACATGAATCGTCTCTTTGGATaGATCATGTCTCTCCTCGGAAGCTGCTTTCTCATC | + |
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Preference number: 6 (lower is better) Translates to: LKAGSHMNRLFG*IMSLLGSCFLI Trigger: GATGAGAAAGCAGCTTCCGAGGAGAGACATGATTCATCCAAAGAGACGATTCATGTGAGAGCCAGCTTTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS CAA 72 bp | CTGCCCTTTCAAAGATGGTCATGGTGTCATCCTTGCTaGTGTGCAATGTCAAAAGGTGGATGCTCTCCTCAT | + |
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Preference number: 6 (lower is better) Translates to: LPFQRWSWCHPC*CAMSKGGCSPH Trigger: ATGAGGAGAGCATCCACCTTTTGACATTGCACACAAGCAAGGATGACACCATGACCATCTTTGAAAGGGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS CCA 72 bp | AGCCAGATGTCTCCCATCAATACTTGGCCTGAAAGCTaGCTCTCACATGAATCGTCTCTTTGGATGAATCAT | + |
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Preference number: 6 (lower is better) Translates to: SQMSPINTWPES*LSHESSLWMNH Trigger: ATGATTCATCCAAAGAGACGATTCATGTGAGAGCCAGCTTTCAGGCCAAGTATTGATGGGAGACATCTGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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| CDS CCA 72 bp | ATGTTATGCAAAAGTCCAGCTCTGCCCTTTCAAAGATaGTCATGGTGTCATCCTTGCTTGTGTGCAATGTCA | + |
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Preference number: 6 (lower is better) Translates to: MLCKSPALPFQR*SWCHPCLCAMS Trigger: TGACATTGCACACAAGCAAGGATGACACCATGACCATCTTTGAAAGGGCAGAGCTGGACTTTTGCATAACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483245.1 |
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