Pregenerated sensors for LINC01998 (Homo sapiens)
Ensembl gene IDs: ENSG00000243321Ensembl transcript IDs: ENST00000464673.1
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGCCAGAGGTCTGGGGAGCAGAGCATGGGAGTGAAGAGGAACCTGTaGGCCGGAAGGAGGAAGGCAACCCAGGAGGCCTGGTCTGTACTG | + |
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Preference number: 5 (lower is better) Translates to: GQRSGEQSMGVKRNL*AGRRKATQEAWSVL Trigger: CAGTACAGACCAGGCCTCCTGGGTTGCCTTCCTCCTTCCGGCTCACAGGTTCCTCTTCACTCCCATGCTCTGCTCCCCAGACCTCTGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS GCA 90 bp | TGTGAGCCGGAAGGAGGAAGGCAACCCAGGAGGCCTGGTCTGTACTaGCAGGGCCTGGTAACCAGCAGAGTGTGGGAGAGATGTGTGCTC | + |
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Preference number: 5 (lower is better) Translates to: CEPEGGRQPRRPGLY*QGLVTSRVWERCVL Trigger: GAGCACACATCTCTCCCACACTCTGCTGGTTACCAGGCCCTGGCAGTACAGACCAGGCCTCCTGGGTTGCCTTCCTCCTTCCGGCTCACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS GCA 90 bp | CCTGGGCCTCATCCTCAGCTCCAGTCTCCGCCTCAAAATTTCTCCTaGCTCAGGCTCTGGGTCACTCCTTCTGGGCCAGAGGTCTGGGGA | + |
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Preference number: 5 (lower is better) Translates to: PGPHPQLQSPPQNFS*LRLWVTPSGPEVWG Trigger: TCCCCAGACCTCTGGCCCAGAAGGAGTGACCCAGAGCCTGAGGCAGGAGAAATTTTGAGGCGGAGACTGGAGCTGAGGATGAGGCCCAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS CCA 90 bp | CTCATGTGGAGAGCCCCTTGTGATCTCCAAGAGGTGCTGGATGGATaGAGAACGATGTCAGAAAGGAAAGGCCAGGTGTCCCGTGAGGCT | + |
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Preference number: 5 (lower is better) Translates to: LMWRAPCDLQEVLDG*RTMSERKGQVSREA Trigger: AGCCTCACGGGACACCTGGCCTTTCCTTTCTGACATCGTTCTCCATCCATCCAGCACCTCTTGGAGATCACAAGGGGCTCTCCACATGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS CCA 90 bp | GGTAACCAGCAGAGTGTGGGAGAGATGTGTGCTCTACATCACCGGTaGTGTCATGGAAACCTGCTGACACCGCAGTTCATACTTCTGTGC | + |
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Preference number: 5 (lower is better) Translates to: GNQQSVGEMCALHHR*CHGNLLTPQFILLC Trigger: GCACAGAAGTATGAACTGCGGTGTCAGCAGGTTTCCATGACACCACCGGTGATGTAGAGCACACATCTCTCCCACACTCTGCTGGTTACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS CCA 90 bp | AGGTGTCCCGTGAGGCTGCTGAAATACAAACTGCTGGAGCAGGGCTaGATGAAATGGCCTTTTCTGGAATCTTCCAGATGCATGTCTGTC | + |
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Preference number: 5 (lower is better) Translates to: RCPVRLLKYKLLEQG*MKWPFLESSRCMSV Trigger: GACAGACATGCATCTGGAAGATTCCAGAAAAGGCCATTTCATCCAGCCCTGCTCCAGCAGTTTGTATTTCAGCAGCCTCACGGGACACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS TCA 90 bp | GTGTCATGGAAACCTGCTGACACCGCAGTTCATACTTCTGTGCAGTaGGATGGAGATGATGTTATTCACTTGAATGCCAGCCAGGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: VSWKPADTAVHTSVQ*DGDDVIHLNASQAG Trigger: CCCAGCCTGGCTGGCATTCAAGTGAATAACATCATCTCCATCTCACTGCACAGAAGTATGAACTGCGGTGTCAGCAGGTTTCCATGACAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS GCA 90 bp | GGAAAGTTTACCTGTCCTCCCCACCCTTCTCTTTTGGCTAGCACCTaGAGGCTTTCATCTCAAAGACTGGCTTGTCTTCAGTTGTTTACA | + |
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Preference number: 5 (lower is better) Translates to: GKFTCPPHPSLLAST*RLSSQRLACLQLFT Trigger: TGTAAACAACTGAAGACAAGCCAGTCTTTGAGATGAAAGCCTGCAGGTGCTAGCCAAAAGAGAAGGGTGGGGAGGACAGGTAAACTTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS TCA 90 bp | TTTTCATGTCAGGTGGGCAAAGTGCCAACCTGTAGGAAGAAGGTTTaGGGGAGGCACATCTCACACGTAAGTGTGATACCACATCATCAT | + |
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Preference number: 5 (lower is better) Translates to: FSCQVGKVPTCRKKV*GRHISHVSVIPHHH Trigger: ATGATGATGTGGTATCACACTTACGTGTGAGATGTGCCTCCCTCAAACCTTCTTCCTACAGGTTGGCACTTTGCCCACCTGACATGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS CCA 90 bp | CACGTGCAACACCCAAATCTATTTCTTAGTTTCAAAAGTCTCATGTaGAGAGCCCCTTGTGATCTCCAAGAGGTGCTGGATGGATGGAGA | + |
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Preference number: 5 (lower is better) Translates to: HVQHPNLFLSFKSLM*RAPCDLQEVLDGWR Trigger: TCTCCATCCATCCAGCACCTCTTGGAGATCACAAGGGGCTCTCCACATGAGACTTTTGAAACTAAGAAATAGATTTGGGTGTTGCACGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS GCA 90 bp | GATCTGGGATTTGAGCCCAAGCAATGTGGCTCCAGAGCAAACACGTaGAACACCCAAATCTATTTCTTAGTTTCAAAAGTCTCATGTGGA | + |
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Preference number: 5 (lower is better) Translates to: DLGFEPKQCGSRANT*NTQIYFLVSKVSCG Trigger: TCCACATGAGACTTTTGAAACTAAGAAATAGATTTGGGTGTTGCACGTGTTTGCTCTGGAGCCACATTGCTTGGGCTCAAATCCCAGATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS TCA 90 bp | TTTCATCTCAAAGACTGGCTTGTCTTCAGTTGTTTACAGGACAAGTaGGTTTTAGCCTTGTATTACCTCTCCTTCTACATTGACTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: FHLKDWLVFSCLQDK*VLALYYLSFYIDFF Trigger: AAAGAAGTCAATGTAGAAGGAGAGGTAATACAAGGCTAAAACTCACTTGTCCTGTAAACAACTGAAGACAAGCCAGTCTTTGAGATGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS TCA 72 bp | TCTGGGGAGCAGAGCATGGGAGTGAAGAGGAACCTGTaGGCCGGAAGGAGGAAGGCAACCCAGGAGGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: SGEQSMGVKRNL*AGRRKATQEAW Trigger: CCAGGCCTCCTGGGTTGCCTTCCTCCTTCCGGCTCACAGGTTCCTCTTCACTCCCATGCTCTGCTCCCCAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS GCA 72 bp | GAAGGAGGAAGGCAACCCAGGAGGCCTGGTCTGTACTaGCAGGGCCTGGTAACCAGCAGAGTGTGGGAGAGA | + |
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Preference number: 6 (lower is better) Translates to: EGGRQPRRPGLY*QGLVTSRVWER Trigger: TCTCTCCCACACTCTGCTGGTTACCAGGCCCTGGCAGTACAGACCAGGCCTCCTGGGTTGCCTTCCTCCTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS CCA 72 bp | AGAGCCCCTTGTGATCTCCAAGAGGTGCTGGATGGATaGAGAACGATGTCAGAAAGGAAAGGCCAGGTGTCC | + |
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Preference number: 6 (lower is better) Translates to: RAPCDLQEVLDG*RTMSERKGQVS Trigger: GGACACCTGGCCTTTCCTTTCTGACATCGTTCTCCATCCATCCAGCACCTCTTGGAGATCACAAGGGGCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS TCA 72 bp | GTGCTCTACATCACCGGTGGTGTCATGGAAACCTGCTaGCACCGCAGTTCATACTTCTGTGCAGTGAGATGG | + |
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Preference number: 6 (lower is better) Translates to: VLYITGGVMETC*HRSSYFCAVRW Trigger: CCATCTCACTGCACAGAAGTATGAACTGCGGTGTCAGCAGGTTTCCATGACACCACCGGTGATGTAGAGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS GCA 72 bp | ACCTGTCCTCCCCACCCTTCTCTTTTGGCTAGCACCTaGAGGCTTTCATCTCAAAGACTGGCTTGTCTTCAG | + |
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Preference number: 6 (lower is better) Translates to: TCPPHPSLLAST*RLSSQRLACLQ Trigger: CTGAAGACAAGCCAGTCTTTGAGATGAAAGCCTGCAGGTGCTAGCCAAAAGAGAAGGGTGGGGAGGACAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS CCA 72 bp | GGGAGAGATGTGTGCTCTACATCACCGGTGGTGTCATaGAAACCTGCTGACACCGCAGTTCATACTTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: GRDVCSTSPVVS*KPADTAVHTSV Trigger: CACAGAAGTATGAACTGCGGTGTCAGCAGGTTTCCATGACACCACCGGTGATGTAGAGCACACATCTCTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS CCA 72 bp | CAGAGTGTGGGAGAGATGTGTGCTCTACATCACCGGTaGTGTCATGGAAACCTGCTGACACCGCAGTTCATA | + |
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Preference number: 6 (lower is better) Translates to: QSVGEMCALHHR*CHGNLLTPQFI Trigger: TATGAACTGCGGTGTCAGCAGGTTTCCATGACACCACCGGTGATGTAGAGCACACATCTCTCCCACACTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS TCA 72 bp | CACCGCAGTTCATACTTCTGTGCAGTGAGATGGAGATaGTGTTATTCACTTGAATGCCAGCCAGGCTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: HRSSYFCAVRWR*CYSLECQPGWA Trigger: GGCCCAGCCTGGCTGGCATTCAAGTGAATAACATCATCTCCATCTCACTGCACAGAAGTATGAACTGCGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS TCA 72 bp | CAGGTGGGCAAAGTGCCAACCTGTAGGAAGAAGGTTTaGGGGAGGCACATCTCACACGTAAGTGTGATACCA | + |
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Preference number: 6 (lower is better) Translates to: QVGKVPTCRKKV*GRHISHVSVIP Trigger: TGGTATCACACTTACGTGTGAGATGTGCCTCCCTCAAACCTTCTTCCTACAGGTTGGCACTTTGCCCACCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS CCA 72 bp | AGGGAAAGTTTACCTGTCCTCCCCACCCTTCTCTTTTaGCTAGCACCTGCAGGCTTTCATCTCAAAGACTGG | + |
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Preference number: 6 (lower is better) Translates to: RESLPVLPTLLF*LAPAGFHLKDW Trigger: CCAGTCTTTGAGATGAAAGCCTGCAGGTGCTAGCCAAAAGAGAAGGGTGGGGAGGACAGGTAAACTTTCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS CCA 72 bp | CTGAAATACAAACTGCTGGAGCAGGGCTGGATGAAATaGCCTTTTCTGGAATCTTCCAGATGCATGTCTGTC | + |
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Preference number: 6 (lower is better) Translates to: LKYKLLEQGWMK*PFLESSRCMSV Trigger: GACAGACATGCATCTGGAAGATTCCAGAAAAGGCCATTTCATCCAGCCCTGCTCCAGCAGTTTGTATTTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS CAA 90 bp | GCTAGCACCTGCAGGCTTTCATCTCAAAGACTGGCTTGTCTTCAGTaGTTTACAGGACAAGTGAGTTTTAGCCTTGTATTACCTCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: ASTCRLSSQRLACLQ*FTGQVSFSLVLPLL Trigger: AAGGAGAGGTAATACAAGGCTAAAACTCACTTGTCCTGTAAACAACTGAAGACAAGCCAGTCTTTGAGATGAAAGCCTGCAGGTGCTAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS CAA 72 bp | TGCAGGCTTTCATCTCAAAGACTGGCTTGTCTTCAGTaGTTTACAGGACAAGTGAGTTTTAGCCTTGTATTA | + |
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Preference number: 6 (lower is better) Translates to: CRLSSQRLACLQ*FTGQVSFSLVL Trigger: TAATACAAGGCTAAAACTCACTTGTCCTGTAAACAACTGAAGACAAGCCAGTCTTTGAGATGAAAGCCTGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS TCA 72 bp | AAAGACTGGCTTGTCTTCAGTTGTTTACAGGACAAGTaGGTTTTAGCCTTGTATTACCTCTCCTTCTACATT | + |
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Preference number: 6 (lower is better) Translates to: KDWLVFSCLQDK*VLALYYLSFYI Trigger: AATGTAGAAGGAGAGGTAATACAAGGCTAAAACTCACTTGTCCTGTAAACAACTGAAGACAAGCCAGTCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS TCA 72 bp | ATGAATTGCAAAAGGATCTATACTGACATATTAGGCTaGATATCTCTCTCTGTCTCTCTCTCTTTCTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: MNCKRIYTDILG*ISLSVSLSFSV Trigger: CACAGAGAAAGAGAGAGAGACAGAGAGAGATATTCAGCCTAATATGTCAGTATAGATCCTTTTGCAATTCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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| CDS GCA 72 bp | ACTATAAATCATCCAGTTGTAGAGGTAAAGGCCTTATaGCCTGTTAATCTAATTGTAAAATCAGAGAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: TINHPVVEVKAL*PVNLIVKSERQ Trigger: CTGCCTCTCTGATTTTACAATTAGATTAACAGGGCATAAGGCCTTTACCTCTACAACTGGATGATTTATAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000464673.1 |
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