Pregenerated sensors for LINC01996 (Homo sapiens)
Ensembl gene IDs: ENSG00000261863Ensembl transcript IDs: ENST00000573270.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTGGCCGAGGTGCCTGTATTTTCCTCAGCAGCAGGAGCCGTGGTTTaGGCTGTGGCTCTGCCACGTGCCGCGTGGTTAATCCAGTTTGCT | + |
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Preference number: 5 (lower is better) Translates to: VAEVPVFSSAAGAVV*AVALPRAAWLIQFA Trigger: AGCAAACTGGATTAACCACGCGGCACGTGGCAGAGCCACAGCGCAAACCACGGCTCCTGCTGCTGAGGAAAATACAGGCACCTCGGCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS GCA 90 bp | TTCCTCAGCAGCAGGAGCCGTGGTTTGCGCTGTGGCTCTGCCACGTaGCGCGTGGTTAATCCAGTTTGCTTCACTGCACCAGGGTGGAAT | + |
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Preference number: 5 (lower is better) Translates to: FLSSRSRGLRCGSAT*RVVNPVCFTAPGWN Trigger: ATTCCACCCTGGTGCAGTGAAGCAAACTGGATTAACCACGCGGCACGTGGCAGAGCCACAGCGCAAACCACGGCTCCTGCTGCTGAGGAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS GCA 90 bp | GGTTTGCGCTGTGGCTCTGCCACGTGCCGCGTGGTTAATCCAGTTTaGTTCACTGCACCAGGGTGGAATCTGAGTGTCTTAATAACTGAA | + |
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Preference number: 5 (lower is better) Translates to: GLRCGSATCRVVNPV*FTAPGWNLSVLITE Trigger: TTCAGTTATTAAGACACTCAGATTCCACCCTGGTGCAGTGAAGCAAACTGGATTAACCACGCGGCACGTGGCAGAGCCACAGCGCAAACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS GCA 90 bp | ACTGCACCAGGGTGGAATCTGAGTGTCTTAATAACTGAAAGGTGCTaGCCTGTTGAACATTCTGTGGGTTCCAAAGCGAGTGGAGCGGGA | + |
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Preference number: 5 (lower is better) Translates to: TAPGWNLSVLITERC*PVEHSVGSKASGAG Trigger: TCCCGCTCCACTCGCTTTGGAACCCACAGAATGTTCAACAGGGCAGCACCTTTCAGTTATTAAGACACTCAGATTCCACCCTGGTGCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS CCA 90 bp | GCCACGTGCCGCGTGGTTAATCCAGTTTGCTTCACTGCACCAGGGTaGAATCTGAGTGTCTTAATAACTGAAAGGTGCTGCCCTGTTGAA | + |
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Preference number: 5 (lower is better) Translates to: ATCRVVNPVCFTAPG*NLSVLITERCCPVE Trigger: TTCAACAGGGCAGCACCTTTCAGTTATTAAGACACTCAGATTCCACCCTGGTGCAGTGAAGCAAACTGGATTAACCACGCGGCACGTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS TCA 90 bp | GTTTTGTCAAAGCCCTTATTCGAGTGCTGTAAGTGGCCTGGAAGGTaGTGTTCCCCAAATTTGCCAACATGCAATGCAATGGTAACCATG | + |
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Preference number: 5 (lower is better) Translates to: VLSKPLFECCKWPGR*CSPNLPTCNAMVTM Trigger: CATGGTTACCATTGCATTGCATGTTGGCAAATTTGGGGAACATCACCTTCCAGGCCACTTACAGCACTCGAATAAGGGCTTTGACAAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS CCA 72 bp | CCGAGGTGCCTGTATTTTCCTCAGCAGCAGGAGCCGTaGTTTGCGCTGTGGCTCTGCCACGTGCCGCGTGGT | + |
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Preference number: 6 (lower is better) Translates to: PRCLYFPQQQEP*FALWLCHVPRG Trigger: ACCACGCGGCACGTGGCAGAGCCACAGCGCAAACCACGGCTCCTGCTGCTGAGGAAAATACAGGCACCTCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS CCA 72 bp | GCCGTGGTTTGCGCTGTGGCTCTGCCACGTGCCGCGTaGTTAATCCAGTTTGCTTCACTGCACCAGGGTGGA | + |
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Preference number: 6 (lower is better) Translates to: AVVCAVALPRAA*LIQFASLHQGG Trigger: TCCACCCTGGTGCAGTGAAGCAAACTGGATTAACCACGCGGCACGTGGCAGAGCCACAGCGCAAACCACGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS CAA 90 bp | AGTGGCCGAGGTGCCTGTATTTTCCTCAGCAGCAGGAGCCGTGGTTaGCGCTGTGGCTCTGCCACGTGCCGCGTGGTTAATCCAGTTTGC | + |
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Preference number: 6 (lower is better) Translates to: SGRGACIFLSSRSRG*RCGSATCRVVNPVC Trigger: GCAAACTGGATTAACCACGCGGCACGTGGCAGAGCCACAGCGCAAACCACGGCTCCTGCTGCTGAGGAAAATACAGGCACCTCGGCCACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS GCA 72 bp | AGCAGGAGCCGTGGTTTGCGCTGTGGCTCTGCCACGTaGCGCGTGGTTAATCCAGTTTGCTTCACTGCACCA | + |
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Preference number: 6 (lower is better) Translates to: SRSRGLRCGSAT*RVVNPVCFTAP Trigger: TGGTGCAGTGAAGCAAACTGGATTAACCACGCGGCACGTGGCAGAGCCACAGCGCAAACCACGGCTCCTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS GCA 72 bp | GTGCCTGTATTTTCCTCAGCAGCAGGAGCCGTGGTTTaGGCTGTGGCTCTGCCACGTGCCGCGTGGTTAATC | + |
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Preference number: 6 (lower is better) Translates to: VPVFSSAAGAVV*AVALPRAAWLI Trigger: GATTAACCACGCGGCACGTGGCAGAGCCACAGCGCAAACCACGGCTCCTGCTGCTGAGGAAAATACAGGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS GCA 72 bp | TGCTCACGTCGAACCCACAGCCCAGAGTGGCCGAGGTaGCTGTATTTTCCTCAGCAGCAGGAGCCGTGGTTT | + |
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Preference number: 6 (lower is better) Translates to: CSRRTHSPEWPR*LYFPQQQEPWF Trigger: AAACCACGGCTCCTGCTGCTGAGGAAAATACAGGCACCTCGGCCACTCTGGGCTGTGGGTTCGACGTGAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS CAA 72 bp | GGTGCCTGTATTTTCCTCAGCAGCAGGAGCCGTGGTTaGCGCTGTGGCTCTGCCACGTGCCGCGTGGTTAAT | + |
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Preference number: 6 (lower is better) Translates to: GACIFLSSRSRG*RCGSATCRVVN Trigger: ATTAACCACGCGGCACGTGGCAGAGCCACAGCGCAAACCACGGCTCCTGCTGCTGAGGAAAATACAGGCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS TCA 72 bp | TTCACAGGTGGGCAAAACAACTCTGCCATGGTCAGGTaGACAGAACCCCTGAGACCTGGGATGGCAGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: FTGGQNNSAMVR*TEPLRPGMAEG Trigger: CCCCTCTGCCATCCCAGGTCTCAGGGGTTCTGTTCACCTGACCATGGCAGAGTTGTTTTGCCCACCTGTGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS CCA 72 bp | CTCTGCCATGGTCAGGTGAACAGAACCCCTGAGACCTaGGATGGCAGAGGGGACAGACATGAACAGAATCCG | + |
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Preference number: 6 (lower is better) Translates to: LCHGQVNRTPET*DGRGDRHEQNP Trigger: CGGATTCTGTTCATGTCTGTCCCCTCTGCCATCCCAGGTCTCAGGGGTTCTGTTCACCTGACCATGGCAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS GCA 72 bp | TGTGGCTCTGCCACGTGCCGCGTGGTTAATCCAGTTTaGTTCACTGCACCAGGGTGGAATCTGAGTGTCTTA | + |
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Preference number: 6 (lower is better) Translates to: CGSATCRVVNPV*FTAPGWNLSVL Trigger: TAAGACACTCAGATTCCACCCTGGTGCAGTGAAGCAAACTGGATTAACCACGCGGCACGTGGCAGAGCCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS TCA 72 bp | TCCAAGGTGGTGACACTGTACTTTGGGGCTGAAGTCTaGAACTTAACCAATGGCAGTTCTGGTCCAGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: SKVVTLYFGAEV*NLTNGSSGPAW Trigger: CCAGGCTGGACCAGAACTGCCATTGGTTAAGTTTCAGACTTCAGCCCCAAAGTACAGTGTCACCACCTTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS TCA 72 bp | TCCTTCATCCAAGGTGGTGACACTGTACTTTGGGGCTaGAGTCTGAAACTTAACCAATGGCAGTTCTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: SFIQGGDTVLWG*SLKLNQWQFWS Trigger: GGACCAGAACTGCCATTGGTTAAGTTTCAGACTTCAGCCCCAAAGTACAGTGTCACCACCTTGGATGAAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS CCA 72 bp | CGCGTGGTTAATCCAGTTTGCTTCACTGCACCAGGGTaGAATCTGAGTGTCTTAATAACTGAAAGGTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: RVVNPVCFTAPG*NLSVLITERCC Trigger: GCAGCACCTTTCAGTTATTAAGACACTCAGATTCCACCCTGGTGCAGTGAAGCAAACTGGATTAACCACGCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS CCA 72 bp | AATGGTAACCATGATGGTTGGAGTGGTTTTCACAGGTaGGCAAAACAACTCTGCCATGGTCAGGTGAACAGA | + |
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Preference number: 6 (lower is better) Translates to: NGNHDGWSGFHR*AKQLCHGQVNR Trigger: TCTGTTCACCTGACCATGGCAGAGTTGTTTTGCCCACCTGTGAAAACCACTCCAACCATCATGGTTACCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS CAA 72 bp | TCTCAAAACTCTCTGGTGATTGGAATTGAAGCCATCTaGAGTAAGAAGGTCCCACTGGACCTTGTCCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: SQNSLVIGIEAI*SKKVPLDLVPP Trigger: TGGAGGGACAAGGTCCAGTGGGACCTTCTTACTCAAGATGGCTTCAATTCCAATCACCAGAGAGTTTTGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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| CDS CCA 72 bp | TTTGCCAACATGCAATGCAATGGTAACCATGATGGTTaGAGTGGTTTTCACAGGTGGGCAAAACAACTCTGC | + |
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Preference number: 6 (lower is better) Translates to: FANMQCNGNHDG*SGFHRWAKQLC Trigger: GCAGAGTTGTTTTGCCCACCTGTGAAAACCACTCCAACCATCATGGTTACCATTGCATTGCATGTTGGCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573270.1 |
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