Pregenerated sensors for LINC01995 (Homo sapiens)
Ensembl gene IDs: ENSG00000244247Ensembl transcript IDs: ENST00000489016.1, ENST00000662733.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCGGGTGTGGCCATCAGTGAGCTTGCCGCTTGTCAGAAGAAACTCTaGTCCGAAGCCGGGCTGCAGACTCACTGTGTGGTTTTGGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: AGVAISELAACQKKL*SEAGLQTHCVVLGR Trigger: CCTGCCCAAAACCACACAGTGAGTCTGCAGCCCGGCTTCGGACCAGAGTTTCTTCTGACAAGCGGCAAGCTCACTGATGGCCACACCCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000489016.1 ENST00000662733.1 |
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| CDS GCA 90 bp | GTGAGCTTGCCGCTTGTCAGAAGAAACTCTGGTCCGAAGCCGGGCTaGAGACTCACTGTGTGGTTTTGGGCAGGTCAGTCCTGTAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: VSLPLVRRNSGPKPG*RLTVWFWAGQSCSC Trigger: GCAGCTACAGGACTGACCTGCCCAAAACCACACAGTGAGTCTGCAGCCCGGCTTCGGACCAGAGTTTCTTCTGACAAGCGGCAAGCTCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000489016.1 ENST00000662733.1 |
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| CDS TCA 90 bp | CACTGGGGAATACTGTTATCCAGGATGAGCGGGTGTGGCCATCAGTaGGCTTGCCGCTTGTCAGAAGAAACTCTGGTCCGAAGCCGGGCT | + |
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Preference number: 5 (lower is better) Translates to: HWGILLSRMSGCGHQ*ACRLSEETLVRSRA Trigger: AGCCCGGCTTCGGACCAGAGTTTCTTCTGACAAGCGGCAAGCTCACTGATGGCCACACCCGCTCATCCTGGATAACAGTATTCCCCAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000489016.1 ENST00000662733.1 |
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| CDS CCA 90 bp | AGAAACTCTGGTCCGAAGCCGGGCTGCAGACTCACTGTGTGGTTTTaGGCAGGTCAGTCCTGTAGCTGCTTTGGTCCTCAGCTTCTGTTT | + |
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Preference number: 5 (lower is better) Translates to: RNSGPKPGCRLTVWF*AGQSCSCFGPQLLF Trigger: AAACAGAAGCTGAGGACCAAAGCAGCTACAGGACTGACCTGCCCAAAACCACACAGTGAGTCTGCAGCCCGGCTTCGGACCAGAGTTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000489016.1 ENST00000662733.1 |
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| CDS CCA 90 bp | GTGTTAATTCCACTGGGGAATACTGTTATCCAGGATGAGCGGGTGTaGCCATCAGTGAGCTTGCCGCTTGTCAGAAGAAACTCTGGTCCG | + |
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Preference number: 5 (lower is better) Translates to: VLIPLGNTVIQDERV*PSVSLPLVRRNSGP Trigger: CGGACCAGAGTTTCTTCTGACAAGCGGCAAGCTCACTGATGGCCACACCCGCTCATCCTGGATAACAGTATTCCCCAGTGGAATTAACAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000489016.1 ENST00000662733.1 |
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| CDS TCA 90 bp | AAGATGCATCGTGTTAATTCCACTGGGGAATACTGTTATCCAGGATaGGCGGGTGTGGCCATCAGTGAGCTTGCCGCTTGTCAGAAGAAA | + |
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Preference number: 5 (lower is better) Translates to: KMHRVNSTGEYCYPG*AGVAISELAACQKK Trigger: TTTCTTCTGACAAGCGGCAAGCTCACTGATGGCCACACCCGCTCATCCTGGATAACAGTATTCCCCAGTGGAATTAACACGATGCATCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000489016.1 ENST00000662733.1 |
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| CDS GCA 72 bp | CCGCTTGTCAGAAGAAACTCTGGTCCGAAGCCGGGCTaGAGACTCACTGTGTGGTTTTGGGCAGGTCAGTCC | + |
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Preference number: 6 (lower is better) Translates to: PLVRRNSGPKPG*RLTVWFWAGQS Trigger: GGACTGACCTGCCCAAAACCACACAGTGAGTCTGCAGCCCGGCTTCGGACCAGAGTTTCTTCTGACAAGCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000489016.1 ENST00000662733.1 |
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| CDS CAA 90 bp | GGGAATACTGTTATCCAGGATGAGCGGGTGTGGCCATCAGTGAGCTaGCCGCTTGTCAGAAGAAACTCTGGTCCGAAGCCGGGCTGCAGA | + |
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Preference number: 6 (lower is better) Translates to: GNTVIQDERVWPSVS*PLVRRNSGPKPGCR Trigger: TCTGCAGCCCGGCTTCGGACCAGAGTTTCTTCTGACAAGCGGCAAGCTCACTGATGGCCACACCCGCTCATCCTGGATAACAGTATTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000489016.1 ENST00000662733.1 |
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| CDS CCA 72 bp | GCCATCAGTGAGCTTGCCGCTTGTCAGAAGAAACTCTaGTCCGAAGCCGGGCTGCAGACTCACTGTGTGGTT | + |
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Preference number: 6 (lower is better) Translates to: AISELAACQKKL*SEAGLQTHCVV Trigger: AACCACACAGTGAGTCTGCAGCCCGGCTTCGGACCAGAGTTTCTTCTGACAAGCGGCAAGCTCACTGATGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000489016.1 ENST00000662733.1 |
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| CDS CAA 72 bp | GTTATCCAGGATGAGCGGGTGTGGCCATCAGTGAGCTaGCCGCTTGTCAGAAGAAACTCTGGTCCGAAGCCG | + |
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Preference number: 6 (lower is better) Translates to: VIQDERVWPSVS*PLVRRNSGPKP Trigger: CGGCTTCGGACCAGAGTTTCTTCTGACAAGCGGCAAGCTCACTGATGGCCACACCCGCTCATCCTGGATAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000489016.1 ENST00000662733.1 |
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| CDS CCA 72 bp | CCACTGGGGAATACTGTTATCCAGGATGAGCGGGTGTaGCCATCAGTGAGCTTGCCGCTTGTCAGAAGAAAC | + |
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Preference number: 6 (lower is better) Translates to: PLGNTVIQDERV*PSVSLPLVRRN Trigger: GTTTCTTCTGACAAGCGGCAAGCTCACTGATGGCCACACCCGCTCATCCTGGATAACAGTATTCCCCAGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000489016.1 ENST00000662733.1 |
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| CDS TCA 72 bp | ATACTGTTATCCAGGATGAGCGGGTGTGGCCATCAGTaGGCTTGCCGCTTGTCAGAAGAAACTCTGGTCCGA | + |
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Preference number: 6 (lower is better) Translates to: ILLSRMSGCGHQ*ACRLSEETLVR Trigger: TCGGACCAGAGTTTCTTCTGACAAGCGGCAAGCTCACTGATGGCCACACCCGCTCATCCTGGATAACAGTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000489016.1 ENST00000662733.1 |
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| CDS TCA 72 bp | CGTGTTAATTCCACTGGGGAATACTGTTATCCAGGATaGGCGGGTGTGGCCATCAGTGAGCTTGCCGCTTGT | + |
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Preference number: 6 (lower is better) Translates to: RVNSTGEYCYPG*AGVAISELAAC Trigger: ACAAGCGGCAAGCTCACTGATGGCCACACCCGCTCATCCTGGATAACAGTATTCCCCAGTGGAATTAACACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000489016.1 ENST00000662733.1 |
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| CDS TCA 72 bp | AGACACTTTCAGCTGGTACCTTTGTGTACCCTTTCCTaGTGCCAGCAACTCAGCCCATGTCTCCCACTCAGC | + |
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Preference number: 6 (lower is better) Translates to: RHFQLVPLCTLS*CQQLSPCLPLS Trigger: GCTGAGTGGGAGACATGGGCTGAGTTGCTGGCATCAGGAAAGGGTACACAAAGGTACCAGCTGAAAGTGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662733.1 |
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| CDS CAA 72 bp | CTGTGTGGTTTTGGGCAGGTCAGTCCTGTAGCTGCTTaGGTCCTCAGCTTCTGTTTTCGCAAATTTAATCCT | + |
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Preference number: 6 (lower is better) Translates to: LCGFGQVSPVAA*VLSFCFRKFNP Trigger: AGGATTAAATTTGCGAAAACAGAAGCTGAGGACCAAAGCAGCTACAGGACTGACCTGCCCAAAACCACACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000489016.1 ENST00000662733.1 |
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| CDS TCA 72 bp | ACACAGGTGAAAAGATATACAAACTCCCTGCTGTCATaGAGCTTACAGTCACATTGTTTGGTCCTTTGTTTG | + |
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Preference number: 6 (lower is better) Translates to: TQVKRYTNSLLS*SLQSHCLVLCL Trigger: CAAACAAAGGACCAAACAATGTGACTGTAAGCTTCATGACAGCAGGGAGTTTGTATATCTTTTCACCTGTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000489016.1 ENST00000662733.1 |
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| CDS GCA 72 bp | TCCAAAAGTTTAAGTATCAAAACCAAGTATCTGCTTTaGATCAGGCACAGCTATGCTAGGCATGAAGACATC | + |
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Preference number: 6 (lower is better) Translates to: SKSLSIKTKYLL*IRHSYARHEDI Trigger: GATGTCTTCATGCCTAGCATAGCTGTGCCTGATGCAAAGCAGATACTTGGTTTTGATACTTAAACTTTTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662733.1 |
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| CDS CCA 72 bp | TCTTTGAAGTTTCCTGTTTTGTTTATTAAATCCCGATaGTTTGCTCTACAATATGGCCATGTTAGGCTTAAT | + |
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Preference number: 6 (lower is better) Translates to: SLKFPVLFIKSR*FALQYGHVRLN Trigger: ATTAAGCCTAACATGGCCATATTGTAGAGCAAACCATCGGGATTTAATAAACAAAACAGGAAACTTCAAAGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000489016.1 ENST00000662733.1 |
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