Pregenerated sensors for LINC01990 (Homo sapiens)
Ensembl gene IDs: ENSG00000273125Ensembl transcript IDs: ENST00000609293.2, ENST00000658914.1, ENST00000664038.1, ENST00000665848.1, ENST00000667329.1, ENST00000669596.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CATTTCTTCAAGGTCACACAGGTAGTTAGCAATAGAGCCAGAGGATaGTCCAAATCTTCTTCCCCAGAGCGCCAAGACAAATGTGGACAA | + |
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Preference number: 5 (lower is better) Translates to: HFFKVTQVVSNRARG*SKSSSPERQDKCGQ Trigger: TTGTCCACATTTGTCTTGGCGCTCTGGGGAAGAAGATTTGGAGCATCCTCTGGCTCTATTGCTAACTACCTGTGTGACCTTGAAGAAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000667329.1 |
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| CDS GCA 90 bp | CATTTCTTCAAGGTCACACAGGTAGTTAGCAATAGAGCCAGAGGATaGTCCAAATCTTCTTTGACTCCTCCTGGACTGAGCCAATGTAGT | + |
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Preference number: 5 (lower is better) Translates to: HFFKVTQVVSNRARG*SKSSLTPPGLSQCS Trigger: ACTACATTGGCTCAGTCCAGGAGGAGTCAAAGAAGATTTGGAGCATCCTCTGGCTCTATTGCTAACTACCTGTGTGACCTTGAAGAAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664038.1 |
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| CDS TCA 72 bp | TGGATCCAAATCACAGCCATATCTCTTGTGAGTGTGTaGACACGGCCTTTGCAGGTTTCTTCTCTGGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: WIQITAISLVSV*TRPLQVSSLGC Trigger: GCAGCCCAGAGAAGAAACCTGCAAAGGCCGTGTTCACACACTCACAAGAGATATGGCTGTGATTTGGATCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000609293.2 ENST00000658914.1 ENST00000664038.1 ENST00000665848.1 ENST00000667329.1 ENST00000669596.1 |
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| CDS CCA 72 bp | ACTCCAGCCTTCTTCCCCAGAGCGCCAAGACAAATGTaGACAAGAGTGAAGAAGTTAGGATACTGCCAAGTG | + |
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Preference number: 6 (lower is better) Translates to: TPAFFPRAPRQM*TRVKKLGYCQV Trigger: CACTTGGCAGTATCCTAACTTCTTCACTCTTGTCCACATTTGTCTTGGCGCTCTGGGGAAGAAGGCTGGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609293.2 |
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| CDS CAA 90 bp | GGCCTTTGCAGGTTTCTTCTCTGGGCTGCAGTGTCCTTATCTTCTTaGACTCCTCCTGGACTGAGCCAATGTAGTCTGGATAGTAGAAAG | + |
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Preference number: 6 (lower is better) Translates to: GLCRFLLWAAVSLSS*TPPGLSQCSLDSRK Trigger: CTTTCTACTATCCAGACTACATTGGCTCAGTCCAGGAGGAGTCAAAGAAGATAAGGACACTGCAGCCCAGAGAAGAAACCTGCAAAGGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669596.1 |
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| CDS GCA 72 bp | AAGGTCACACAGGTAGTTAGCAATAGAGCCAGAGGATaGTCCAAATCTTCTTTGACTCCTCCTGGACTGAGC | + |
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Preference number: 6 (lower is better) Translates to: KVTQVVSNRARG*SKSSLTPPGLS Trigger: GCTCAGTCCAGGAGGAGTCAAAGAAGATTTGGAGCATCCTCTGGCTCTATTGCTAACTACCTGTGTGACCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664038.1 |
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| CDS GCA 72 bp | AAGGTCACACAGGTAGTTAGCAATAGAGCCAGAGGATaGTCCAAATCTTCTTCCCCAGAGCGCCAAGACAAA | + |
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Preference number: 6 (lower is better) Translates to: KVTQVVSNRARG*SKSSSPERQDK Trigger: TTTGTCTTGGCGCTCTGGGGAAGAAGATTTGGAGCATCCTCTGGCTCTATTGCTAACTACCTGTGTGACCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000667329.1 |
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| CDS CAA 72 bp | AGGTTTCTTCTCTGGGCTGCAGTGTCCTTATCTTCTTaGACTCCTCCTGGACTGAGCCAATGTAGTCTGGAT | + |
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Preference number: 6 (lower is better) Translates to: RFLLWAAVSLSS*TPPGLSQCSLD Trigger: ATCCAGACTACATTGGCTCAGTCCAGGAGGAGTCAAAGAAGATAAGGACACTGCAGCCCAGAGAAGAAACCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669596.1 |
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| CDS CAA 72 bp | TCTGCCTCCCGAAGACTTCATGGTATCACAGGAGTTTaGTTGTCAGCCCATCACATCTGGATCCAAATCACA | + |
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Preference number: 6 (lower is better) Translates to: SASRRLHGITGV*LSAHHIWIQIT Trigger: TGTGATTTGGATCCAGATGTGATGGGCTGACAACAAAACTCCTGTGATACCATGAAGTCTTCGGGAGGCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000609293.2 ENST00000658914.1 ENST00000664038.1 ENST00000665848.1 ENST00000667329.1 ENST00000669596.1 |
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| CDS CAA 72 bp | GTTAGCAATAGAGCCAGAGGATGCTCCAAATCTTCTTaGACTCCTCCTGGACTGAGCCAATGTAGTCTGGAT | + |
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Preference number: 6 (lower is better) Translates to: VSNRARGCSKSS*TPPGLSQCSLD Trigger: ATCCAGACTACATTGGCTCAGTCCAGGAGGAGTCAAAGAAGATTTGGAGCATCCTCTGGCTCTATTGCTAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664038.1 |
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| CDS CAA 90 bp | CACTTCAATTCTGCCTCCCGAAGACTTCATGGTATCACAGGAGTTTaGTTGTCAGCCCATCACATCTGGATCCAAATCACAGCCATATCT | + |
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Preference number: 6 (lower is better) Translates to: HFNSASRRLHGITGV*LSAHHIWIQITAIS Trigger: AGATATGGCTGTGATTTGGATCCAGATGTGATGGGCTGACAACAAAACTCCTGTGATACCATGAAGTCTTCGGGAGGCAGAATTGAAGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000609293.2 ENST00000658914.1 ENST00000664038.1 ENST00000665848.1 ENST00000667329.1 ENST00000669596.1 |
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| CDS CAA 90 bp | ACACAGGTAGTTAGCAATAGAGCCAGAGGATGCTCCAAATCTTCTTaGACTCCTCCTGGACTGAGCCAATGTAGTCTGGATAGTAGAAAG | + |
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Preference number: 6 (lower is better) Translates to: TQVVSNRARGCSKSS*TPPGLSQCSLDSRK Trigger: CTTTCTACTATCCAGACTACATTGGCTCAGTCCAGGAGGAGTCAAAGAAGATTTGGAGCATCCTCTGGCTCTATTGCTAACTACCTGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664038.1 |
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| CDS CAA 90 bp | TTCAATTCTGCCTCCCGAAGACTTCATGGTATCACAGGAGTTTTGTaGTCAGCCCATCACATCTGGATCCAAATCACAGCCATATCTCTT | + |
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Preference number: 6 (lower is better) Translates to: FNSASRRLHGITGVL*SAHHIWIQITAISL Trigger: AAGAGATATGGCTGTGATTTGGATCCAGATGTGATGGGCTGACAACAAAACTCCTGTGATACCATGAAGTCTTCGGGAGGCAGAATTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000609293.2 ENST00000658914.1 ENST00000664038.1 ENST00000665848.1 ENST00000667329.1 ENST00000669596.1 |
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| CDS CCA 72 bp | TCATGTTCACTTCAATTCTGCCTCCCGAAGACTTCATaGTATCACAGGAGTTTTGTTGTCAGCCCATCACAT | + |
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Preference number: 6 (lower is better) Translates to: SCSLQFCLPKTS*YHRSFVVSPSH Trigger: ATGTGATGGGCTGACAACAAAACTCCTGTGATACCATGAAGTCTTCGGGAGGCAGAATTGAAGTGAACATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000609293.2 ENST00000658914.1 ENST00000664038.1 ENST00000665848.1 ENST00000667329.1 ENST00000669596.1 |
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| CDS CCA 72 bp | TTTGTTTTCTTCTTCCCCAGAGCGCCAAGACAAATGTaGACAAGAGTGAAGAAGTTAGGATACTGCCAAGTG | + |
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Preference number: 6 (lower is better) Translates to: FVFFFPRAPRQM*TRVKKLGYCQV Trigger: CACTTGGCAGTATCCTAACTTCTTCACTCTTGTCCACATTTGTCTTGGCGCTCTGGGGAAGAAGAAAACAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658914.1 |
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| CDS TCA 72 bp | TTAGTCTTCAAAAGGCTTGGCTGTTTTGCTTATTGGTaGGCTCCTGTGACAAACCAGGGCATTCGATTGAAT | + |
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Preference number: 6 (lower is better) Translates to: LVFKRLGCFAYW*APVTNQGIRLN Trigger: ATTCAATCGAATGCCCTGGTTTGTCACAGGAGCTCACCAATAAGCAAAACAGCCAAGCCTTTTGAAGACTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609293.2 |
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| CDS CAA 72 bp | CTAATTAGTCTTCAAAAGGCTTGGCTGTTTTGCTTATaGGTGAGCTCCTGTGACAAACCAGGGCATTCGATT | + |
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Preference number: 6 (lower is better) Translates to: LISLQKAWLFCL*VSSCDKPGHSI Trigger: AATCGAATGCCCTGGTTTGTCACAGGAGCTCACCAATAAGCAAAACAGCCAAGCCTTTTGAAGACTAATTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609293.2 |
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