RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC01989 (Homo sapiens)

Ensembl gene IDs: ENSG00000261156

Ensembl transcript IDs: ENST00000566930.6, ENST00000580792.1, ENST00000584724.5

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CTTGCCAGTTGGGTGATGCGCCTCCATATTTTAACTCAGCTGTACTaGTGGCAAAGCCCAAGCTCCTTCAATTACATCCTCCTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: LASWVMRLHILTQLY*WQSPSSFNYILLLL
Trigger: GAGGAGGAGGAGGATGTAATTGAAGGAGCTTGGGCTTTGCCATCAGTACAGCTGAGTTAAAATATGGAGGCGCATCACCCAACTGGCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566930.6
CDS CCA 90 bp AGGCCCTGCACCCAGTCAATCACCAAGTCACAGGGATTTCACCTCTaGAATAATTTCAATCACCACCTGCATTCCCAATGGCTTCGTCCA +
Preference number: 5 (lower is better)
Translates to: RPCTQSITKSQGFHL*NNFNHHLHSQWLRP
Trigger: TGGACGAAGCCATTGGGAATGCAGGTGGTGATTGAAATTATTCCAGAGGTGAAATCCCTGTGACTTGGTGATTGACTGGGTGCAGGGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584724.5
CDS TCA 90 bp GACAGAGCCAAACAGGAACAGAGGCTGCCCAACTCCCTTCTGTACTaGGCTCTGTTTTCCTGGTTTGCCATTCTATTCTGCAATTTTTCC +
Preference number: 5 (lower is better)
Translates to: DRAKQEQRLPNSLLY*ALFSWFAILFCNFS
Trigger: GGAAAAATTGCAGAATAGAATGGCAAACCAGGAAAACAGAGCTCAGTACAGAAGGGAGTTGGGCAGCCTCTGTTCCTGTTTGGCTCTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000566930.6
CDS CCA 90 bp GCGCATATTCTTCTTTTTATTCAAGTATCCACTGATTCACCTTCATaGGCCAGGCTCTTGGGTACAATGTGCATGAGGCAGTTCAAGTCC +
Preference number: 5 (lower is better)
Translates to: AHILLFIQVSTDSPS*ARLLGTMCMRQFKS
Trigger: GGACTTGAACTGCCTCATGCACATTGTACCCAAGAGCCTGGCCCATGAAGGTGAATCAGTGGATACTTGAATAAAAAGAAGAATATGCGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000566930.6
ENST00000580792.1
ENST00000584724.5
CDS CAA 72 bp CAAGTATCCACTGATTCACCTTCATGGGCCAGGCTCTaGGGTACAATGTGCATGAGGCAGTTCAAGTCCCCA +
Preference number: 6 (lower is better)
Translates to: QVSTDSPSWARL*GTMCMRQFKSP
Trigger: TGGGGACTTGAACTGCCTCATGCACATTGTACCCAAGAGCCTGGCCCATGAAGGTGAATCAGTGGATACTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000566930.6
ENST00000580792.1
ENST00000584724.5
CDS CCA 72 bp GAGCTCTCAGATGCATCATCCACAAAGCCTGTTTGGTaGTCTCTTCACACGGACGCGTATGAAATTTGGTGC +
Preference number: 6 (lower is better)
Translates to: ELSDASSTKPVW*SLHTDAYEIWC
Trigger: GCACCAAATTTCATACGCGTCCGTGTGAAGAGACCACCAAACAGGCTTTGTGGATGATGCATCTGAGAGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566930.6
CDS CAA 90 bp CTTTTTATTCAAGTATCCACTGATTCACCTTCATGGGCCAGGCTCTaGGGTACAATGTGCATGAGGCAGTTCAAGTCCCCACCATCCTGG +
Preference number: 6 (lower is better)
Translates to: LFIQVSTDSPSWARL*GTMCMRQFKSPPSW
Trigger: CCAGGATGGTGGGGACTTGAACTGCCTCATGCACATTGTACCCAAGAGCCTGGCCCATGAAGGTGAATCAGTGGATACTTGAATAAAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000566930.6
ENST00000580792.1
ENST00000584724.5
CDS TCA 72 bp TGGGTGATGCGCCTCCATATTTTAACTCAGCTGTACTaGTGGCAAAGCCCAAGCTCCTTCAATTACATCCTC +
Preference number: 6 (lower is better)
Translates to: WVMRLHILTQLY*WQSPSSFNYIL
Trigger: GAGGATGTAATTGAAGGAGCTTGGGCTTTGCCATCAGTACAGCTGAGTTAAAATATGGAGGCGCATCACCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566930.6
CDS CCA 72 bp CTTCTTTTTATTCAAGTATCCACTGATTCACCTTCATaGGCCAGGCTCTTGGGTACAATGTGCATGAGGCAG +
Preference number: 6 (lower is better)
Translates to: LLFIQVSTDSPS*ARLLGTMCMRQ
Trigger: CTGCCTCATGCACATTGTACCCAAGAGCCTGGCCCATGAAGGTGAATCAGTGGATACTTGAATAAAAAGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000566930.6
ENST00000580792.1
ENST00000584724.5
CDS CCA 72 bp TTTCCTGGTTTGCCATTCTATTCTGCAATTTTTCCTTaGGTCTTCTTTCCCTTCTTGGCTGAGAGCATGCAT +
Preference number: 6 (lower is better)
Translates to: FPGLPFYSAIFP*VFFPFLAESMH
Trigger: ATGCATGCTCTCAGCCAAGAAGGGAAAGAAGACCCAAGGAAAAATTGCAGAATAGAATGGCAAACCAGGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000566930.6