Pregenerated sensors for LINC01988 (Homo sapiens)
Ensembl gene IDs: ENSG00000283036Ensembl transcript IDs: ENST00000634998.2, ENST00000636975.1, ENST00000663017.1
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTGGCCCACGCTTTCGGGGAGGGCCTGGGAGGGGGAAGCGCAGGATaGTTGTGTCAGGCAGTAGCAGAGGGCTCCTGGCATCAGCAGGCA | + |
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Preference number: 5 (lower is better) Translates to: VAHAFGEGLGGGSAG*LCQAVAEGSWHQQA Trigger: TGCCTGCTGATGCCAGGAGCCCTCTGCTACTGCCTGACACAAGCATCCTGCGCTTCCCCCTCCCAGGCCCTCCCCGAAAGCGTGGGCCAC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000634998.2 ENST00000636975.1 ENST00000663017.1 |
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| CDS CCA 90 bp | CAGGCCACGATTTGTGCTGGGTTGAAGGCCTGTGAGGACCCCATGTaGGACCCCCTGTGTGACGATCACAGCCTGGAGGATGACCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: QATICAGLKACEDPM*DPLCDDHSLEDDLL Trigger: CAGAAGGTCATCCTCCAGGCTGTGATCGTCACACAGGGGGTCCCACATGGGGTCCTCACAGGCCTTCAACCCAGCACAAATCGTGGCCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000634998.2 ENST00000636975.1 ENST00000663017.1 |
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| CDS CCA 90 bp | GAGGTCTGGGCAGCCGATTGGCTGTCTGATGTGAGGTGGAGAAGATaGGCCTGGTCAAAGGGGCAGCCTTTGGATTGGAACTGGATGCCC | + |
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Preference number: 5 (lower is better) Translates to: EVWAADWLSDVRWRR*AWSKGQPLDWNWMP Trigger: GGGCATCCAGTTCCAATCCAAAGGCTGCCCCTTTGACCAGGCCCATCTTCTCCACCTCACATCAGACAGCCAATCGGCTGCCCAGACCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000634998.2 ENST00000636975.1 |
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| CDS CCA 90 bp | TGGAAACCAGGCAGGGAAAGGCAATGGCAGGCACACTTCCAGTTTTaGGGCATCAGGCACTGTGACAGCGAGGATGGTGCAGGGGTGAGT | + |
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Preference number: 5 (lower is better) Translates to: WKPGRERQWQAHFQF*GIRHCDSEDGAGVS Trigger: ACTCACCCCTGCACCATCCTCGCTGTCACAGTGCCTGATGCCCCAAAACTGGAAGTGTGCCTGCCATTGCCTTTCCCTGCCTGGTTTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000636975.1 |
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| CDS CCA 90 bp | TGGGCAGCCGATTGGCTGTCTGATGTGAGGTGGAGAAGATGGGCCTaGTCAAAGGGGCAGCCTTTGGATTGGAACTGGATGCCCAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: WAADWLSDVRWRRWA*SKGQPLDWNWMPSL Trigger: CAGACTGGGCATCCAGTTCCAATCCAAAGGCTGCCCCTTTGACCAGGCCCATCTTCTCCACCTCACATCAGACAGCCAATCGGCTGCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000634998.2 |
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| CDS CCA 90 bp | TGGGCAGCCGATTGGCTGTCTGATGTGAGGTGGAGAAGATGGGCCTaGTCAAAGGGGCAGCCTTTGGATTGGAACTGGATGCCCAGTCTT | + |
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Preference number: 5 (lower is better) Translates to: WAADWLSDVRWRRWA*SKGQPLDWNWMPSL Trigger: AAGACTGGGCATCCAGTTCCAATCCAAAGGCTGCCCCTTTGACCAGGCCCATCTTCTCCACCTCACATCAGACAGCCAATCGGCTGCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000636975.1 |
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| CDS TCA 90 bp | GTTACTGAGGTTTCGAGGTCTGGGCAGCCGATTGGCTGTCTGATGTaGGGTGGAGAAGATGGGCCTGGTCAAAGGGGCAGCCTTTGGATT | + |
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Preference number: 5 (lower is better) Translates to: VTEVSRSGQPIGCLM*GGEDGPGQRGSLWI Trigger: AATCCAAAGGCTGCCCCTTTGACCAGGCCCATCTTCTCCACCTCACATCAGACAGCCAATCGGCTGCCCAGACCTCGAAACCTCAGTAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000634998.2 ENST00000636975.1 |
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| CDS TCA 90 bp | TCTAGGTTACTGAGGTTTCGAGGTCTGGGCAGCCGATTGGCTGTCTaGTGTGAGGTGGAGAAGATGGGCCTGGTCAAAGGGGCAGCCTTT | + |
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Preference number: 5 (lower is better) Translates to: SRLLRFRGLGSRLAV*CEVEKMGLVKGAAF Trigger: AAAGGCTGCCCCTTTGACCAGGCCCATCTTCTCCACCTCACATCAGACAGCCAATCGGCTGCCCAGACCTCGAAACCTCAGTAACCTAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000634998.2 ENST00000636975.1 |
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| CDS TCA 90 bp | TGGATTGGAACTGGATGCCCAGTCTGTCTGGGAGAAGGAAGGCAGTaGAGGGAAGGACCACGAAAAGGAGTGGCAGAAGACTGGCAGTCC | + |
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Preference number: 5 (lower is better) Translates to: WIGTGCPVCLGEGRQ*REGPRKGVAEDWQS Trigger: GGACTGCCAGTCTTCTGCCACTCCTTTTCGTGGTCCTTCCCTTCACTGCCTTCCTTCTCCCAGACAGACTGGGCATCCAGTTCCAATCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000634998.2 |
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| CDS TCA 90 bp | TTGAGATATTTCAAAGGTCAAACCAGGCCACGATTTGTGCTGGGTTaGAGGCCTGTGAGGACCCCATGTGGGACCCCCTGTGTGACGATC | + |
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Preference number: 5 (lower is better) Translates to: LRYFKGQTRPRFVLG*RPVRTPCGTPCVTI Trigger: GATCGTCACACAGGGGGTCCCACATGGGGTCCTCACAGGCCTTCAACCCAGCACAAATCGTGGCCTGGTTTGACCTTTGAAATATCTCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000634998.2 ENST00000636975.1 ENST00000663017.1 |
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| CDS GCA 72 bp | GCAGAGGGCTCCTGGCATCAGCAGGCACCGGGCCAGTaGTTCTTGGGCCACTTTCTCTTAGGCAGCAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: AEGSWHQQAPGQ*FLGHFLLGSSR Trigger: CCTGCTGCTGCCTAAGAGAAAGTGGCCCAAGAAGCACTGGCCCGGTGCCTGCTGATGCCAGGAGCCCTCTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000634998.2 ENST00000636975.1 ENST00000663017.1 |
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| CDS TCA 72 bp | GTTTCGAGGTCTGGGCAGCCGATTGGCTGTCTGATGTaGGGTGGAGAAGATGGGCCTGGTCAAAGGGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: VSRSGQPIGCLM*GGEDGPGQRGS Trigger: GCTGCCCCTTTGACCAGGCCCATCTTCTCCACCTCACATCAGACAGCCAATCGGCTGCCCAGACCTCGAAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000634998.2 ENST00000636975.1 |
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| CDS CCA 72 bp | GAGGTCTGGGCAGCCGATTGGCTGTCTGATGTGAGGTaGAGAAGATGGGCCTGGTCAAAGGGGCAGCCTTTG | + |
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Preference number: 6 (lower is better) Translates to: EVWAADWLSDVR*RRWAWSKGQPL Trigger: CAAAGGCTGCCCCTTTGACCAGGCCCATCTTCTCCACCTCACATCAGACAGCCAATCGGCTGCCCAGACCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000634998.2 ENST00000636975.1 |
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| CDS TCA 72 bp | CTGAGGTTTCGAGGTCTGGGCAGCCGATTGGCTGTCTaGTGTGAGGTGGAGAAGATGGGCCTGGTCAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: LRFRGLGSRLAV*CEVEKMGLVKG Trigger: CCCTTTGACCAGGCCCATCTTCTCCACCTCACATCAGACAGCCAATCGGCTGCCCAGACCTCGAAACCTCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000634998.2 ENST00000636975.1 |
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| CDS CCA 72 bp | ATTTGTGCTGGGTTGAAGGCCTGTGAGGACCCCATGTaGGACCCCCTGTGTGACGATCACAGCCTGGAGGAT | + |
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Preference number: 6 (lower is better) Translates to: ICAGLKACEDPM*DPLCDDHSLED Trigger: ATCCTCCAGGCTGTGATCGTCACACAGGGGGTCCCACATGGGGTCCTCACAGGCCTTCAACCCAGCACAAAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000634998.2 ENST00000636975.1 ENST00000663017.1 |
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| CDS CCA 72 bp | TGGGCCTGGTCAAAGGGGCAGCCTTTGGATTGGAACTaGATGCCCAGTCTGTCTGGGAGAAGGAAGGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: WAWSKGQPLDWN*MPSLSGRRKAV Trigger: CACTGCCTTCCTTCTCCCAGACAGACTGGGCATCCAGTTCCAATCCAAAGGCTGCCCCTTTGACCAGGCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000634998.2 |
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| CDS TCA 72 bp | TTCAAAGGTCAAACCAGGCCACGATTTGTGCTGGGTTaGAGGCCTGTGAGGACCCCATGTGGGACCCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: FKGQTRPRFVLG*RPVRTPCGTPC Trigger: ACAGGGGGTCCCACATGGGGTCCTCACAGGCCTTCAACCCAGCACAAATCGTGGCCTGGTTTGACCTTTGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000634998.2 ENST00000636975.1 ENST00000663017.1 |
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| CDS CCA 72 bp | TGGGCCTGGTCAAAGGGGCAGCCTTTGGATTGGAACTaGATGCCCAGTCTTGTCAGAGGACATTGCCCCTTG | + |
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Preference number: 6 (lower is better) Translates to: WAWSKGQPLDWN*MPSLVRGHCPL Trigger: CAAGGGGCAATGTCCTCTGACAAGACTGGGCATCCAGTTCCAATCCAAAGGCTGCCCCTTTGACCAGGCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000636975.1 |
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| CDS CCA 72 bp | GGTGGAGAAGATGGGCCTGGTCAAAGGGGCAGCCTTTaGATTGGAACTGGATGCCCAGTCTTGTCAGAGGAC | + |
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Preference number: 6 (lower is better) Translates to: GGEDGPGQRGSL*IGTGCPVLSED Trigger: GTCCTCTGACAAGACTGGGCATCCAGTTCCAATCCAAAGGCTGCCCCTTTGACCAGGCCCATCTTCTCCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000636975.1 |
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| CDS CCA 72 bp | GCAGCCGATTGGCTGTCTGATGTGAGGTGGAGAAGATaGGCCTGGTCAAAGGGGCAGCCTTTGGATTGGAAC | + |
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Preference number: 6 (lower is better) Translates to: AADWLSDVRWRR*AWSKGQPLDWN Trigger: GTTCCAATCCAAAGGCTGCCCCTTTGACCAGGCCCATCTTCTCCACCTCACATCAGACAGCCAATCGGCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000634998.2 ENST00000636975.1 |
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| CDS CCA 72 bp | GGTGGAGAAGATGGGCCTGGTCAAAGGGGCAGCCTTTaGATTGGAACTGGATGCCCAGTCTGTCTGGGAGAA | + |
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Preference number: 6 (lower is better) Translates to: GGEDGPGQRGSL*IGTGCPVCLGE Trigger: TTCTCCCAGACAGACTGGGCATCCAGTTCCAATCCAAAGGCTGCCCCTTTGACCAGGCCCATCTTCTCCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000634998.2 |
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| CDS CAA 72 bp | TTTCAAAGGTCAAACCAGGCCACGATTTGTGCTGGGTaGAAGGCCTGTGAGGACCCCATGTGGGACCCCCTG | + |
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Preference number: 6 (lower is better) Translates to: FQRSNQATICAG*KACEDPMWDPL Trigger: CAGGGGGTCCCACATGGGGTCCTCACAGGCCTTCAACCCAGCACAAATCGTGGCCTGGTTTGACCTTTGAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000634998.2 ENST00000636975.1 ENST00000663017.1 |
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| CDS CAA 72 bp | AGGTGGAGAAGATGGGCCTGGTCAAAGGGGCAGCCTTaGGATTGGAACTGGATGCCCAGTCTGTCTGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: RWRRWAWSKGQP*DWNWMPSLSGR Trigger: TCTCCCAGACAGACTGGGCATCCAGTTCCAATCCAAAGGCTGCCCCTTTGACCAGGCCCATCTTCTCCACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000634998.2 |
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| CDS CAA 90 bp | TCTGATGTGAGGTGGAGAAGATGGGCCTGGTCAAAGGGGCAGCCTTaGGATTGGAACTGGATGCCCAGTCTTGTCAGAGGACATTGCCCC | + |
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Preference number: 6 (lower is better) Translates to: SDVRWRRWAWSKGQP*DWNWMPSLVRGHCP Trigger: GGGGCAATGTCCTCTGACAAGACTGGGCATCCAGTTCCAATCCAAAGGCTGCCCCTTTGACCAGGCCCATCTTCTCCACCTCACATCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000636975.1 |
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| CDS CAA 90 bp | TCTGATGTGAGGTGGAGAAGATGGGCCTGGTCAAAGGGGCAGCCTTaGGATTGGAACTGGATGCCCAGTCTGTCTGGGAGAAGGAAGGCA | + |
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Preference number: 6 (lower is better) Translates to: SDVRWRRWAWSKGQP*DWNWMPSLSGRRKA Trigger: TGCCTTCCTTCTCCCAGACAGACTGGGCATCCAGTTCCAATCCAAAGGCTGCCCCTTTGACCAGGCCCATCTTCTCCACCTCACATCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000634998.2 |
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| CDS CCA 72 bp | AGAAGATGGGCCTGGTCAAAGGGGCAGCCTTTGGATTaGAACTGGATGCCCAGTCTGTCTGGGAGAAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: RRWAWSKGQPLD*NWMPSLSGRRK Trigger: CTTCCTTCTCCCAGACAGACTGGGCATCCAGTTCCAATCCAAAGGCTGCCCCTTTGACCAGGCCCATCTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000634998.2 |
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| CDS CAA 72 bp | AGGTGGAGAAGATGGGCCTGGTCAAAGGGGCAGCCTTaGGATTGGAACTGGATGCCCAGTCTTGTCAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: RWRRWAWSKGQP*DWNWMPSLVRG Trigger: TCCTCTGACAAGACTGGGCATCCAGTTCCAATCCAAAGGCTGCCCCTTTGACCAGGCCCATCTTCTCCACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000636975.1 |
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| CDS CCA 72 bp | AGAAGATGGGCCTGGTCAAAGGGGCAGCCTTTGGATTaGAACTGGATGCCCAGTCTTGTCAGAGGACATTGC | + |
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Preference number: 6 (lower is better) Translates to: RRWAWSKGQPLD*NWMPSLVRGHC Trigger: GCAATGTCCTCTGACAAGACTGGGCATCCAGTTCCAATCCAAAGGCTGCCCCTTTGACCAGGCCCATCTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000636975.1 |
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| CDS CCA 72 bp | GATTGGCTGTCTGATGTGAGGTGGAGAAGATGGGCCTaGTCAAAGGGGCAGCCTTTGGATTGGAACTGGATG | + |
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Preference number: 6 (lower is better) Translates to: DWLSDVRWRRWA*SKGQPLDWNWM Trigger: CATCCAGTTCCAATCCAAAGGCTGCCCCTTTGACCAGGCCCATCTTCTCCACCTCACATCAGACAGCCAATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000634998.2 ENST00000636975.1 |
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| CDS CAA 90 bp | GTTGAGATATTTCAAAGGTCAAACCAGGCCACGATTTGTGCTGGGTaGAAGGCCTGTGAGGACCCCATGTGGGACCCCCTGTGTGACGAT | + |
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Preference number: 6 (lower is better) Translates to: VEIFQRSNQATICAG*KACEDPMWDPLCDD Trigger: ATCGTCACACAGGGGGTCCCACATGGGGTCCTCACAGGCCTTCAACCCAGCACAAATCGTGGCCTGGTTTGACCTTTGAAATATCTCAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000634998.2 ENST00000636975.1 ENST00000663017.1 |
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