Pregenerated sensors for LINC01983 (Homo sapiens)
Ensembl gene IDs: ENSG00000223783Ensembl transcript IDs: ENST00000413586.1, ENST00000429834.1, ENST00000444346.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ACGAGCCTGGCGTTCACCGTTCTCACCCATCACATCAGCACAACGTaGCCTTGTGGGGAGCCACCTCCTCTGCTCCCAAGACACCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: TSLAFTVLTHHISTT*PCGEPPPLLPRHLV Trigger: CACCAGGTGTCTTGGGAGCAGAGGAGGTGGCTCCCCACAAGGTCACGTTGTGCTGATGTGATGGGTGAGAACGGTGAACGCCAGGCTCGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429834.1 |
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| CDS GCA 90 bp | CGTGACCTTGTGGGGAGCCACCTCCTCTGCTCCCAAGACACCTGGTaGGTAACGATTACAGAGCACCCGTCCTGCCGTGATGCTGTCACA | + |
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Preference number: 5 (lower is better) Translates to: RDLVGSHLLCSQDTW*VTITEHPSCRDAVT Trigger: TGTGACAGCATCACGGCAGGACGGGTGCTCTGTAATCGTTACGCACCAGGTGTCTTGGGAGCAGAGGAGGTGGCTCCCCACAAGGTCACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429834.1 |
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| CDS CCA 90 bp | CAACGTGACCTTGTGGGGAGCCACCTCCTCTGCTCCCAAGACACCTaGTGCGTAACGATTACAGAGCACCCGTCCTGCCGTGATGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: QRDLVGSHLLCSQDT*CVTITEHPSCRDAV Trigger: GACAGCATCACGGCAGGACGGGTGCTCTGTAATCGTTACGCACCAGGTGTCTTGGGAGCAGAGGAGGTGGCTCCCCACAAGGTCACGTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429834.1 |
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| CDS GCA 90 bp | CCCATCACATCAGCACAACGTGACCTTGTGGGGAGCCACCTCCTCTaGTCCCAAGACACCTGGTGCGTAACGATTACAGAGCACCCGTCC | + |
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Preference number: 5 (lower is better) Translates to: PITSAQRDLVGSHLL*SQDTWCVTITEHPS Trigger: GGACGGGTGCTCTGTAATCGTTACGCACCAGGTGTCTTGGGAGCAGAGGAGGTGGCTCCCCACAAGGTCACGTTGTGCTGATGTGATGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429834.1 |
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| CDS CCA 90 bp | GTCATCACGACGCTCTGCATACAGCAAGAGGCACAAGAGGAGGTCTaGCAAAAGGAGGACGCACCTCCAACTTGGTCTGCAGGGAAGAAG | + |
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Preference number: 5 (lower is better) Translates to: VITTLCIQQEAQEEV*QKEDAPPTWSAGKK Trigger: CTTCTTCCCTGCAGACCAAGTTGGAGGTGCGTCCTCCTTTTGCCAGACCTCCTCTTGTGCCTCTTGCTGTATGCAGAGCGTCGTGATGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000444346.1 |
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| CDS TCA 90 bp | ATTGTGTCTGGTGACGGGGCTGCCCCTTCACAGCTTCTGGATAGCTaGAGACTCAAATTGGAAAGCTTGACGAGCCTGGCGTTCACCGTT | + |
|
Preference number: 5 (lower is better) Translates to: IVSGDGAAPSQLLDS*RLKLESLTSLAFTV Trigger: AACGGTGAACGCCAGGCTCGTCAAGCTTTCCAATTTGAGTCTTCAGCTATCCAGAAGCTGTGAAGGGGCAGCCCCGTCACCAGACACAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000429834.1 |
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| CDS TCA 90 bp | ATTGTGTCTGGTGACGGGGCTGCCCCTTCACAGCTTCTGGATAGCTaGAGACTCAAATTGGAAAGCTTGACGAGCTGTCATCACGACGCT | + |
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Preference number: 5 (lower is better) Translates to: IVSGDGAAPSQLLDS*RLKLESLTSCHHDA Trigger: AGCGTCGTGATGACAGCTCGTCAAGCTTTCCAATTTGAGTCTTCAGCTATCCAGAAGCTGTGAAGGGGCAGCCCCGTCACCAGACACAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000444346.1 |
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| CDS CCA 90 bp | TGCAGGTTGATTTATTCTCCCCTGTGTGGGTCTGTCAGTCTTCCATaGAGGCTGATGGAGGCTGTCCCTTTGCAAGGATTGTGTCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: CRLIYSPLCGSVSLP*RLMEAVPLQGLCLV Trigger: CACCAGACACAATCCTTGCAAAGGGACAGCCTCCATCAGCCTCCATGGAAGACTGACAGACCCACACAGGGGAGAATAAATCAACCTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000413586.1 ENST00000429834.1 ENST00000444346.1 |
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| CDS TCA 90 bp | ATTGTGTCTGGTGACGGGGCTGCCCCTTCACAGCTTCTGGATAGCTaGAGACTCAAATTGGAAAGCTTGACGAGCCCGCTTCTGGAAATT | + |
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Preference number: 5 (lower is better) Translates to: IVSGDGAAPSQLLDS*RLKLESLTSPLLEI Trigger: AATTTCCAGAAGCGGGCTCGTCAAGCTTTCCAATTTGAGTCTTCAGCTATCCAGAAGCTGTGAAGGGGCAGCCCCGTCACCAGACACAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000413586.1 |
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| CDS TCA 72 bp | GCGTTCACCGTTCTCACCCATCACATCAGCACAACGTaGCCTTGTGGGGAGCCACCTCCTCTGCTCCCAAGA | + |
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Preference number: 6 (lower is better) Translates to: AFTVLTHHISTT*PCGEPPPLLPR Trigger: TCTTGGGAGCAGAGGAGGTGGCTCCCCACAAGGTCACGTTGTGCTGATGTGATGGGTGAGAACGGTGAACGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429834.1 |
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| CDS TCA 72 bp | CTCCCCTGTGTGGGTCTGTCAGTCTTCCATGGAGGCTaGTGGAGGCTGTCCCTTTGCAAGGATTGTGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: LPCVGLSVFHGG*WRLSLCKDCVW Trigger: CCAGACACAATCCTTGCAAAGGGACAGCCTCCATCAGCCTCCATGGAAGACTGACAGACCCACACAGGGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000413586.1 ENST00000429834.1 ENST00000444346.1 |
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| CDS TCA 72 bp | GGTGACGGGGCTGCCCCTTCACAGCTTCTGGATAGCTaGAGACTCAAATTGGAAAGCTTGACGAGCCTGGCG | + |
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Preference number: 6 (lower is better) Translates to: GDGAAPSQLLDS*RLKLESLTSLA Trigger: CGCCAGGCTCGTCAAGCTTTCCAATTTGAGTCTTCAGCTATCCAGAAGCTGTGAAGGGGCAGCCCCGTCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000429834.1 |
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| CDS CAA 72 bp | ATTCTAGGGTTGGGAGATGCTCCATCGAAGGTCACTTaGGCCCATCCCGGCAGCCCAGGATTGAGGTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: ILGLGDAPSKVT*AHPGSPGLRSP Trigger: TGGAGACCTCAATCCTGGGCTGCCGGGATGGGCCAAAGTGACCTTCGATGGAGCATCTCCCAACCCTAGAAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000444346.1 |
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| CDS TCA 72 bp | GGTGACGGGGCTGCCCCTTCACAGCTTCTGGATAGCTaGAGACTCAAATTGGAAAGCTTGACGAGCCCGCTT | + |
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Preference number: 6 (lower is better) Translates to: GDGAAPSQLLDS*RLKLESLTSPL Trigger: AAGCGGGCTCGTCAAGCTTTCCAATTTGAGTCTTCAGCTATCCAGAAGCTGTGAAGGGGCAGCCCCGTCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000413586.1 |
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| CDS CCA 72 bp | ACGCTCTGCATACAGCAAGAGGCACAAGAGGAGGTCTaGCAAAAGGAGGACGCACCTCCAACTTGGTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: TLCIQQEAQEEV*QKEDAPPTWSA Trigger: TGCAGACCAAGTTGGAGGTGCGTCCTCCTTTTGCCAGACCTCCTCTTGTGCCTCTTGCTGTATGCAGAGCGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000444346.1 |
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| CDS TCA 72 bp | GGTGACGGGGCTGCCCCTTCACAGCTTCTGGATAGCTaGAGACTCAAATTGGAAAGCTTGACGAGCTGTCAT | + |
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Preference number: 6 (lower is better) Translates to: GDGAAPSQLLDS*RLKLESLTSCH Trigger: ATGACAGCTCGTCAAGCTTTCCAATTTGAGTCTTCAGCTATCCAGAAGCTGTGAAGGGGCAGCCCCGTCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000444346.1 |
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| CDS GCA 72 bp | CATTTCATAAATCCCTGTAATTCTAGGGTTGGGAGATaGTCCATCGAAGGTCACTTTGGCCCATCCCGGCAG | + |
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Preference number: 6 (lower is better) Translates to: HFINPCNSRVGR*SIEGHFGPSRQ Trigger: CTGCCGGGATGGGCCAAAGTGACCTTCGATGGAGCATCTCCCAACCCTAGAATTACAGGGATTTATGAAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000444346.1 |
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| CDS TCA 72 bp | GGAAATTCGCACTGTGCATCGGCCTCATCAAAGCTCTaGAACAAACACCACCTTACAGGAAGTTTTCCAAAC | + |
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Preference number: 6 (lower is better) Translates to: GNSHCASASSKL*NKHHLTGSFPN Trigger: GTTTGGAAAACTTCCTGTAAGGTGGTGTTTGTTTCAGAGCTTTGATGAGGCCGATGCACAGTGCGAATTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000413586.1 |
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| CDS GCA 72 bp | TTTAAAATGGAAAGCAGAACTCCCAAGCTGGCTGAATaGTTCATTTGCAGGTTGATTTATTCTCCCCTGTGT | + |
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Preference number: 6 (lower is better) Translates to: FKMESRTPKLAE*FICRLIYSPLC Trigger: ACACAGGGGAGAATAAATCAACCTGCAAATGAAGCATTCAGCCAGCTTGGGAGTTCTGCTTTCCATTTTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000413586.1 ENST00000429834.1 ENST00000444346.1 |
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