Pregenerated sensors for LINC01978 (Homo sapiens)
Ensembl gene IDs: ENSG00000262188Ensembl transcript IDs: ENST00000572353.1, ENST00000574526.1, ENST00000655170.1
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGGCCCTACACTAGGCCTCACAGTCCTGCCTCTGGCCCAACAGCCTaGGCCCCAGGAGAGTGCTGCTCTGGGTGCCACCTGCCGCCACGG | + |
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Preference number: 5 (lower is better) Translates to: RPYTRPHSPASGPTA*APGECCSGCHLPPR Trigger: CCGTGGCGGCAGGTGGCACCCAGAGCAGCACTCTCCTGGGGCCCAGGCTGTTGGGCCAGAGGCAGGACTGTGAGGCCTAGTGTAGGGCCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655170.1 |
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| CDS GCA 90 bp | AGGCTGCGGGCCAGCGTGGTGCCTGCTGGGTGTGGATGCTGGTACTaGTACTTCATGGGGAACGTCCGGTGGGCCTCCTGCCACCCTGCC | + |
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Preference number: 5 (lower is better) Translates to: RLRASVVPAGCGCWY*YFMGNVRWASCHPA Trigger: GGCAGGGTGGCAGGAGGCCCACCGGACGTTCCCCATGAAGTAGCAGTACCAGCATCCACACCCAGCAGGCACCACGCTGGCCCGCAGCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000572353.1 ENST00000655170.1 |
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| CDS GCA 90 bp | CGGCAGGACTCGGCAGCAGGTCGATCCGGCGCAGACTCATCTGAGTaGGACGTAGCGGCAGCCAGTCACATCGTGTCCTCCGGAGGCCGC | + |
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Preference number: 5 (lower is better) Translates to: RQDSAAGRSGADSSE*DVAAASHIVSSGGR Trigger: GCGGCCTCCGGAGGACACGATGTGACTGGCTGCCGCTACGTCGCACTCAGATGAGTCTGCGCCGGATCGACCTGCTGCCGAGTCCTGCCG 68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655170.1 |
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| CDS CCA 90 bp | GCCAGGCGTGCTGGCAGGGAGGCTGCGGGCCAGCGTGGTGCCTGCTaGGTGTGGATGCTGGTACTGCTACTTCATGGGGAACGTCCGGTG | + |
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Preference number: 5 (lower is better) Translates to: ARRAGREAAGQRGAC*VWMLVLLLHGERPV Trigger: CACCGGACGTTCCCCATGAAGTAGCAGTACCAGCATCCACACCCAGCAGGCACCACGCTGGCCCGCAGCCTCCCTGCCAGCACGCCTGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000572353.1 ENST00000655170.1 |
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| CDS GCA 90 bp | GGCGTTATTGCGAGGGACAGGCAGAGCTGGACTGGGGACCCAGGCTaGTTGACATCCGGTGAGGGCCGCTCCTCCCTCTGCCCACTCGGT | + |
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Preference number: 5 (lower is better) Translates to: GVIARDRQSWTGDPG*LTSGEGRSSLCPLG Trigger: ACCGAGTGGGCAGAGGGAGGAGCGGCCCTCACCGGATGTCAAGCAGCCTGGGTCCCCAGTCCAGCTCTGCCTGTCCCTCGCAATAACGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000572353.1 ENST00000574526.1 ENST00000655170.1 |
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| CDS CCA 90 bp | CCAGCGTGGTGCCTGCTGGGTGTGGATGCTGGTACTGCTACTTCATaGGGAACGTCCGGTGGGCCTCCTGCCACCCTGCCCCTTGGTGCC | + |
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Preference number: 5 (lower is better) Translates to: PAWCLLGVDAGTATS*GTSGGPPATLPLGA Trigger: GGCACCAAGGGGCAGGGTGGCAGGAGGCCCACCGGACGTTCCCCATGAAGTAGCAGTACCAGCATCCACACCCAGCAGGCACCACGCTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000572353.1 ENST00000655170.1 |
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| CDS TCA 90 bp | TGTCCGGCAGGACTCGGCAGCAGGTCGATCCGGCGCAGACTCATCTaGGTGCGACGTAGCGGCAGCCAGTCACATCGTGTCCTCCGGAGG | + |
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Preference number: 5 (lower is better) Translates to: CPAGLGSRSIRRRLI*VRRSGSQSHRVLRR Trigger: CCTCCGGAGGACACGATGTGACTGGCTGCCGCTACGTCGCACTCAGATGAGTCTGCGCCGGATCGACCTGCTGCCGAGTCCTGCCGGACA 66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655170.1 |
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| CDS CCA 90 bp | GTGGGCCTCCTGCCACCCTGCCCCTTGGTGCCCCTGTCTGTAAAGTaGCACCTCCCAGGCCCAACCCTTTCTTCACTGGCTGGCCAGGGT | + |
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Preference number: 5 (lower is better) Translates to: VGLLPPCPLVPLSVK*HLPGPTLSSLAGQG Trigger: ACCCTGGCCAGCCAGTGAAGAAAGGGTTGGGCCTGGGAGGTGCCACTTTACAGACAGGGGCACCAAGGGGCAGGGTGGCAGGAGGCCCAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000572353.1 ENST00000655170.1 |
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| CDS TCA 90 bp | TTATTGCGAGGGACAGGCAGAGCTGGACTGGGGACCCAGGCTGCTTaGCATCCGGTGAGGGCCGCTCCTCCCTCTGCCCACTCGGTGACT | + |
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Preference number: 5 (lower is better) Translates to: LLRGTGRAGLGTQAA*HPVRAAPPSAHSVT Trigger: AGTCACCGAGTGGGCAGAGGGAGGAGCGGCCCTCACCGGATGTCAAGCAGCCTGGGTCCCCAGTCCAGCTCTGCCTGTCCCTCGCAATAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000572353.1 ENST00000574526.1 ENST00000655170.1 |
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| CDS GCA 90 bp | GTACTGCTACTTCATGGGGAACGTCCGGTGGGCCTCCTGCCACCCTaGCCCTTGGTGCCCCTGTCTGTAAAGTGGCACCTCCCAGGCCCA | + |
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Preference number: 5 (lower is better) Translates to: VLLLHGERPVGLLPP*PLVPLSVKWHLPGP Trigger: TGGGCCTGGGAGGTGCCACTTTACAGACAGGGGCACCAAGGGGCAGGGTGGCAGGAGGCCCACCGGACGTTCCCCATGAAGTAGCAGTAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000572353.1 ENST00000655170.1 |
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| CDS CCA 90 bp | TCCCTCTCTGACTGCTCACTCCCAGCTGTAGAGAGAGGTGGTTCCTaGATCACGGAGCAGTGCCTGCCTAGGGTGCAGGCCTGGGCTCGG | + |
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Preference number: 5 (lower is better) Translates to: SLSDCSLPAVERGGS*ITEQCLPRVQAWAR Trigger: CCGAGCCCAGGCCTGCACCCTAGGCAGGCACTGCTCCGTGATCCAGGAACCACCTCTCTCTACAGCTGGGAGTGAGCAGTCAGAGAGGGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS CCA 90 bp | AGTATCAGGTGTCAGGGTGGTGTGGGACATGGACAGCCAGGGGCCTaGGAGAGCAAAGGCTGGAACGGTAGACCTGGCTCTCCACGGAGC | + |
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Preference number: 5 (lower is better) Translates to: SIRCQGGVGHGQPGA*ESKGWNGRPGSPRS Trigger: GCTCCGTGGAGAGCCAGGTCTACCGTTCCAGCCTTTGCTCTCCCAGGCCCCTGGCTGTCCATGTCCCACACCACCCTGACACCTGATACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS GCA 90 bp | CTAGCTTGCTGGGTAGCACCGGGCAAGGCTGTCTCCCTCTCTGACTaGTCACTCCCAGCTGTAGAGAGAGGTGGTTCCTGGATCACGGAG | + |
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Preference number: 5 (lower is better) Translates to: LACWVAPGKAVSLSD*SLPAVERGGSWITE Trigger: CTCCGTGATCCAGGAACCACCTCTCTCTACAGCTGGGAGTGAGCAGTCAGAGAGGGAGACAGCCTTGCCCGGTGCTACCCAGCAAGCTAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000572353.1 ENST00000574526.1 |
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| CDS TCA 90 bp | AGCACCGTGCCTGAGACAGAGAGATGGCTCACAAATGGTCGTCACTaGGGCGTTATTGCGAGGGACAGGCAGAGCTGGACTGGGGACCCA | + |
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Preference number: 5 (lower is better) Translates to: STVPETERWLTNGRH*GVIARDRQSWTGDP Trigger: TGGGTCCCCAGTCCAGCTCTGCCTGTCCCTCGCAATAACGCCTCAGTGACGACCATTTGTGAGCCATCTCTCTGTCTCAGGCACGGTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000572353.1 ENST00000655170.1 |
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| CDS CCA 90 bp | CAGGGCTCATCCAGGCAGAGCACTGAGTGCGGTGTTCCAAGGCCGTaGTGCACTGTAGCTGTTGGTGACACGGGTGTCAAGTATCAGGTG | + |
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Preference number: 5 (lower is better) Translates to: QGSSRQSTECGVPRP*CTVAVGDTGVKYQV Trigger: CACCTGATACTTGACACCCGTGTCACCAACAGCTACAGTGCACCACGGCCTTGGAACACCGCACTCAGTGCTCTGCCTGGATGAGCCCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS GCA 90 bp | GGCTCATCCAGGCAGAGCACTGAGTGCGGTGTTCCAAGGCCGTGGTaGACTGTAGCTGTTGGTGACACGGGTGTCAAGTATCAGGTGTCA | + |
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Preference number: 5 (lower is better) Translates to: GSSRQSTECGVPRPW*TVAVGDTGVKYQVS Trigger: TGACACCTGATACTTGACACCCGTGTCACCAACAGCTACAGTGCACCACGGCCTTGGAACACCGCACTCAGTGCTCTGCCTGGATGAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS GCA 90 bp | CTGAGAAAACCCTGGGAGGGATTTCTTAGAATGTTCAGCAGTTGCTaGCCAGCCCAGGACTTGGCAGGAGCCCCAGTGTCCGGAAGAGGG | + |
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Preference number: 5 (lower is better) Translates to: LRKPWEGFLRMFSSC*PAQDLAGAPVSGRG Trigger: CCCTCTTCCGGACACTGGGGCTCCTGCCAAGTCCTGGGCTGGGCAGCAACTGCTGAACATTCTAAGAAATCCCTCCCAGGGTTTTCTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655170.1 |
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| CDS CCA 90 bp | CCCTCACAAGGTGGCACAGCCATCATCTGCAGTCGCAGAACATGCTaGTCACCCCAGGAGGAAACGCCCGCTCATTCAGCAGTTCCTCTT | + |
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Preference number: 5 (lower is better) Translates to: PSQGGTAIICSRRTC*SPQEETPAHSAVPL Trigger: AAGAGGAACTGCTGAATGAGCGGGCGTTTCCTCCTGGGGTGACCAGCATGTTCTGCGACTGCAGATGATGGCTGTGCCACCTTGTGAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS TCA 90 bp | GCCACAGAATCCTTCCAAGTCTACGTCTGCCCCTTCCTACCTCCGTaGCATTGGGCTTCAGTTTCCCCATCTGAGGCGTTATTGCGAGGG | + |
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Preference number: 5 (lower is better) Translates to: ATESFQVYVCPFLPP*HWASVSPSEALLRG Trigger: CCCTCGCAATAACGCCTCAGATGGGGAAACTGAAGCCCAATGTCACGGAGGTAGGAAGGGGCAGACGTAGACTTGGAAGGATTCTGTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS GCA 72 bp | CAGCCAGTCACATCGTGTCCTCCGGAGGCCGCCTGCTaGTGCGCGGAGCCAGCGTCCAGGACCTGGGGCCGG | + |
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Preference number: 6 (lower is better) Translates to: QPVTSCPPEAAC*CAEPASRTWGR Trigger: CCGGCCCCAGGTCCTGGACGCTGGCTCCGCGCAGCAGCAGGCGGCCTCCGGAGGACACGATGTGACTGGCTG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655170.1 |
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| CDS GCA 72 bp | CGGCAGCCAGTCACATCGTGTCCTCCGGAGGCCGCCTaGTGCTGCGCGGAGCCAGCGTCCAGGACCTGGGGC | + |
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Preference number: 6 (lower is better) Translates to: RQPVTSCPPEAA*CCAEPASRTWG Trigger: GCCCCAGGTCCTGGACGCTGGCTCCGCGCAGCAGCAGGCGGCCTCCGGAGGACACGATGTGACTGGCTGCCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655170.1 |
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| CDS GCA 72 bp | GCCTCTGGCCCAACAGCCTGGGCCCCAGGAGAGTGCTaGTCTGGGTGCCACCTGCCGCCACGGTCCCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: ASGPTAWAPGEC*SGCHLPPRSPQ Trigger: CTGAGGGGACCGTGGCGGCAGGTGGCACCCAGAGCAGCACTCTCCTGGGGCCCAGGCTGTTGGGCCAGAGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655170.1 |
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| CDS GCA 72 bp | CCTGCCTCTGGCCCAACAGCCTGGGCCCCAGGAGAGTaGTGCTCTGGGTGCCACCTGCCGCCACGGTCCCCT | + |
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Preference number: 6 (lower is better) Translates to: PASGPTAWAPGE*CSGCHLPPRSP Trigger: AGGGGACCGTGGCGGCAGGTGGCACCCAGAGCAGCACTCTCCTGGGGCCCAGGCTGTTGGGCCAGAGGCAGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655170.1 |
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| CDS TCA 72 bp | GGGACAGGCAGAGCTGGACTGGGGACCCAGGCTGCTTaGCATCCGGTGAGGGCCGCTCCTCCCTCTGCCCAC | + |
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Preference number: 6 (lower is better) Translates to: GTGRAGLGTQAA*HPVRAAPPSAH Trigger: GTGGGCAGAGGGAGGAGCGGCCCTCACCGGATGTCAAGCAGCCTGGGTCCCCAGTCCAGCTCTGCCTGTCCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000572353.1 ENST00000574526.1 ENST00000655170.1 |
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| CDS CCA 72 bp | CTGCGGGCCAGCGTGGTGCCTGCTGGGTGTGGATGCTaGTACTGCTACTTCATGGGGAACGTCCGGTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: LRASVVPAGCGC*YCYFMGNVRWA Trigger: GGCCCACCGGACGTTCCCCATGAAGTAGCAGTACCAGCATCCACACCCAGCAGGCACCACGCTGGCCCGCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000572353.1 ENST00000655170.1 |
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| CDS CCA 72 bp | ACTAGGCCTCACAGTCCTGCCTCTGGCCCAACAGCCTaGGCCCCAGGAGAGTGCTGCTCTGGGTGCCACCTG | + |
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Preference number: 6 (lower is better) Translates to: TRPHSPASGPTA*APGECCSGCHL Trigger: CAGGTGGCACCCAGAGCAGCACTCTCCTGGGGCCCAGGCTGTTGGGCCAGAGGCAGGACTGTGAGGCCTAGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655170.1 |
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| CDS CCA 72 bp | GGCTCTCCAAGGCACAAGGTCTGTGAGTGTGTCAGGTaGGGAGCCCAACCTGCTGGGGGAACCCCCAGCCCC | + |
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Preference number: 6 (lower is better) Translates to: GSPRHKVCECVR*GAQPAGGTPSP Trigger: GGGGCTGGGGGTTCCCCCAGCAGGTTGGGCTCCCCACCTGACACACTCACAGACCTTGTGCCTTGGAGAGCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000655170.1 |
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| CDS CCA 72 bp | CTGGGACAGGCCCAGCCCCTGGGCGGCATAGCTATGTaGCCCCGGGAACACTGGCTCTCCAAGGCACAAGGT | + |
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Preference number: 6 (lower is better) Translates to: LGQAQPLGGIAM*PREHWLSKAQG Trigger: ACCTTGTGCCTTGGAGAGCCAGTGTTCCCGGGGCCACATAGCTATGCCGCCCAGGGGCTGGGCCTGTCCCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655170.1 |
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| CDS CAA 72 bp | AGGGCCGCTCCTCCCTCTGCCCACTCGGTGACTAGCTaGCTGGGTAGCACCGGGCAAGGCTGTCTCCCTCTC | + |
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Preference number: 6 (lower is better) Translates to: RAAPPSAHSVTS*LGSTGQGCLPL Trigger: GAGAGGGAGACAGCCTTGCCCGGTGCTACCCAGCAAGCTAGTCACCGAGTGGGCAGAGGGAGGAGCGGCCCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000572353.1 ENST00000574526.1 ENST00000655170.1 |
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| CDS CAA 90 bp | GTTATTGCGAGGGACAGGCAGAGCTGGACTGGGGACCCAGGCTGCTaGACATCCGGTGAGGGCCGCTCCTCCCTCTGCCCACTCGGTGAC | + |
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Preference number: 6 (lower is better) Translates to: VIARDRQSWTGDPGC*TSGEGRSSLCPLGD Trigger: GTCACCGAGTGGGCAGAGGGAGGAGCGGCCCTCACCGGATGTCAAGCAGCCTGGGTCCCCAGTCCAGCTCTGCCTGTCCCTCGCAATAAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000572353.1 ENST00000574526.1 ENST00000655170.1 |
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| CDS CCA 72 bp | TGCCTGCTGGGTGTGGATGCTGGTACTGCTACTTCATaGGGAACGTCCGGTGGGCCTCCTGCCACCCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: CLLGVDAGTATS*GTSGGPPATLP Trigger: GGGCAGGGTGGCAGGAGGCCCACCGGACGTTCCCCATGAAGTAGCAGTACCAGCATCCACACCCAGCAGGCA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000572353.1 ENST00000655170.1 |
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| CDS TCA 72 bp | GGACTCGGCAGCAGGTCGATCCGGCGCAGACTCATCTaGGTGCGACGTAGCGGCAGCCAGTCACATCGTGTC | + |
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Preference number: 6 (lower is better) Translates to: GLGSRSIRRRLI*VRRSGSQSHRV Trigger: GACACGATGTGACTGGCTGCCGCTACGTCGCACTCAGATGAGTCTGCGCCGGATCGACCTGCTGCCGAGTCC 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655170.1 |
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| CDS GCA 72 bp | TCGGCAGCAGGTCGATCCGGCGCAGACTCATCTGAGTaGGACGTAGCGGCAGCCAGTCACATCGTGTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: SAAGRSGADSSE*DVAAASHIVSS Trigger: GGAGGACACGATGTGACTGGCTGCCGCTACGTCGCACTCAGATGAGTCTGCGCCGGATCGACCTGCTGCCGA 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655170.1 |
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| CDS TCA 72 bp | CGTCATGGGGGTACAGGGCTCATCCAGGCAGAGCACTaGGTGCGGTGTTCCAAGGCCGTGGTGCACTGTAGC | + |
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Preference number: 6 (lower is better) Translates to: RHGGTGLIQAEH*VRCSKAVVHCS Trigger: GCTACAGTGCACCACGGCCTTGGAACACCGCACTCAGTGCTCTGCCTGGATGAGCCCTGTACCCCCATGACG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS CCA 72 bp | CTGCCACCCTGCCCCTTGGTGCCCCTGTCTGTAAAGTaGCACCTCCCAGGCCCAACCCTTTCTTCACTGGCT | + |
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Preference number: 6 (lower is better) Translates to: LPPCPLVPLSVK*HLPGPTLSSLA Trigger: AGCCAGTGAAGAAAGGGTTGGGCCTGGGAGGTGCCACTTTACAGACAGGGGCACCAAGGGGCAGGGTGGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000572353.1 ENST00000655170.1 |
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| CDS CCA 72 bp | GACTGCTCACTCCCAGCTGTAGAGAGAGGTGGTTCCTaGATCACGGAGCAGTGCCTGCCTAGGGTGCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: DCSLPAVERGGS*ITEQCLPRVQA Trigger: GGCCTGCACCCTAGGCAGGCACTGCTCCGTGATCCAGGAACCACCTCTCTCTACAGCTGGGAGTGAGCAGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS CCA 72 bp | TGTCAGGGTGGTGTGGGACATGGACAGCCAGGGGCCTaGGAGAGCAAAGGCTGGAACGGTAGACCTGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: CQGGVGHGQPGA*ESKGWNGRPGS Trigger: AGAGCCAGGTCTACCGTTCCAGCCTTTGCTCTCCCAGGCCCCTGGCTGTCCATGTCCCACACCACCCTGACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS GCA 72 bp | TGGGTAGCACCGGGCAAGGCTGTCTCCCTCTCTGACTaGTCACTCCCAGCTGTAGAGAGAGGTGGTTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: WVAPGKAVSLSD*SLPAVERGGSW Trigger: CCAGGAACCACCTCTCTCTACAGCTGGGAGTGAGCAGTCAGAGAGGGAGACAGCCTTGCCCGGTGCTACCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000572353.1 ENST00000574526.1 |
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| CDS GCA 72 bp | ATGGGGGTACAGGGCTCATCCAGGCAGAGCACTGAGTaGGGTGTTCCAAGGCCGTGGTGCACTGTAGCTGTT | + |
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Preference number: 6 (lower is better) Translates to: MGVQGSSRQSTE*GVPRPWCTVAV Trigger: AACAGCTACAGTGCACCACGGCCTTGGAACACCGCACTCAGTGCTCTGCCTGGATGAGCCCTGTACCCCCAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS GCA 72 bp | CCAGTCCCCAGCCCACGTTTCCAGCTGTGTGGCTTGTaGACAACACTGCATCCGCCCGTCTCAGTTTCGTCA | + |
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Preference number: 6 (lower is better) Translates to: PVPSPRFQLCGL*TTLHPPVSVSS Trigger: TGACGAAACTGAGACGGGCGGATGCAGTGTTGTGCACAAGCCACACAGCTGGAAACGTGGGCTGGGGACTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS CCA 72 bp | TCCAGGCAGAGCACTGAGTGCGGTGTTCCAAGGCCGTaGTGCACTGTAGCTGTTGGTGACACGGGTGTCAAG | + |
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Preference number: 6 (lower is better) Translates to: SRQSTECGVPRP*CTVAVGDTGVK Trigger: CTTGACACCCGTGTCACCAACAGCTACAGTGCACCACGGCCTTGGAACACCGCACTCAGTGCTCTGCCTGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS CCA 72 bp | TTGGGTTCCAGTCCCCAGCCCACGTTTCCAGCTGTGTaGCTTGTGCACAACACTGCATCCGCCCGTCTCAGT | + |
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Preference number: 6 (lower is better) Translates to: LGSSPQPTFPAV*LVHNTASARLS Trigger: ACTGAGACGGGCGGATGCAGTGTTGTGCACAAGCCACACAGCTGGAAACGTGGGCTGGGGACTGGAACCCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS CAA 72 bp | GTTCCAGTCCCCAGCCCACGTTTCCAGCTGTGTGGCTaGTGCACAACACTGCATCCGCCCGTCTCAGTTTCG | + |
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Preference number: 6 (lower is better) Translates to: VPVPSPRFQLCG*CTTLHPPVSVS Trigger: CGAAACTGAGACGGGCGGATGCAGTGTTGTGCACAAGCCACACAGCTGGAAACGTGGGCTGGGGACTGGAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS GCA 72 bp | CAAGGTGGCACAGCCATCATCTGCAGTCGCAGAACATaGTGGTCACCCCAGGAGGAAACGCCCGCTCATTCA | + |
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Preference number: 6 (lower is better) Translates to: QGGTAIICSRRT*WSPQEETPAHS Trigger: TGAATGAGCGGGCGTTTCCTCCTGGGGTGACCAGCATGTTCTGCGACTGCAGATGATGGCTGTGCCACCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS CAA 72 bp | CACTGGCTGGCCAGGGTTCAATGGGAGCAGGTTTCGTaGGCATGTAGCACCGTGCCTGAGACAGAGAGATGG | + |
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Preference number: 6 (lower is better) Translates to: HWLARVQWEQVS*ACSTVPETERW Trigger: CCATCTCTCTGTCTCAGGCACGGTGCTACATGCCAACGAAACCTGCTCCCATTGAACCCTGGCCAGCCAGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000572353.1 ENST00000655170.1 |
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| CDS TCA 72 bp | CCTACCTCCGTGACATTGGGCTTCAGTTTCCCCATCTaGGGCGTTATTGCGAGGGACAGGCAGAGCTGGACT | + |
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Preference number: 6 (lower is better) Translates to: PTSVTLGFSFPI*GVIARDRQSWT Trigger: AGTCCAGCTCTGCCTGTCCCTCGCAATAACGCCTCAGATGGGGAAACTGAAGCCCAATGTCACGGAGGTAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS GCA 72 bp | AGGCAGAGCACTGAGTGCGGTGTTCCAAGGCCGTGGTaGACTGTAGCTGTTGGTGACACGGGTGTCAAGTAT | + |
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Preference number: 6 (lower is better) Translates to: RQSTECGVPRPW*TVAVGDTGVKY Trigger: ATACTTGACACCCGTGTCACCAACAGCTACAGTGCACCACGGCCTTGGAACACCGCACTCAGTGCTCTGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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| CDS TCA 72 bp | CCTGAGACAGAGAGATGGCTCACAAATGGTCGTCACTaGGGCGTTATTGCGAGGGACAGGCAGAGCTGGACT | + |
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Preference number: 6 (lower is better) Translates to: PETERWLTNGRH*GVIARDRQSWT Trigger: AGTCCAGCTCTGCCTGTCCCTCGCAATAACGCCTCAGTGACGACCATTTGTGAGCCATCTCTCTGTCTCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000572353.1 ENST00000655170.1 |
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| CDS TCA 72 bp | TCCTTCCAAGTCTACGTCTGCCCCTTCCTACCTCCGTaGCATTGGGCTTCAGTTTCCCCATCTGAGGCGTTA | + |
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Preference number: 6 (lower is better) Translates to: SFQVYVCPFLPP*HWASVSPSEAL Trigger: TAACGCCTCAGATGGGGAAACTGAAGCCCAATGTCACGGAGGTAGGAAGGGGCAGACGTAGACTTGGAAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000574526.1 |
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