Pregenerated sensors for LINC01974 (Homo sapiens)
Ensembl gene IDs: ENSG00000262031Ensembl transcript IDs: ENST00000575126.1
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGCAATCTAGCTGAGAGTATGGCTCCTGAGCACTGGTCCCAGGCCTaGGTTCTAGAATGTCTCTGTCTGCAGGGCTCACTTGCTGCTGTG | + |
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Preference number: 5 (lower is better) Translates to: GNLAESMAPEHWSQA*VLECLCLQGSLAAV Trigger: CACAGCAGCAAGTGAGCCCTGCAGACAGAGACATTCTAGAACCCAGGCCTGGGACCAGTGCTCAGGAGCCATACTCTCAGCTAGATTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000575126.1 |
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| CDS CCA 90 bp | TGGCAGGCTGAAGGCAATCTAGCTGAGAGTATGGCTCCTGAGCACTaGTCCCAGGCCTGGGTTCTAGAATGTCTCTGTCTGCAGGGCTCA | + |
|
Preference number: 5 (lower is better) Translates to: WQAEGNLAESMAPEH*SQAWVLECLCLQGS Trigger: TGAGCCCTGCAGACAGAGACATTCTAGAACCCAGGCCTGGGACCAGTGCTCAGGAGCCATACTCTCAGCTAGATTGCCTTCAGCCTGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000575126.1 |
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| CDS GCA 90 bp | CCCACCCAGCACCTTCCTTTCAACAGAAGAAAATTCCAGATGGAATaGACAAGGTACAGTGGGTTTGGAGGCATGGAGAAGCCGGTAGAA | + |
|
Preference number: 5 (lower is better) Translates to: PTQHLPFNRRKFQME*TRYSGFGGMEKPVE Trigger: TTCTACCGGCTTCTCCATGCCTCCAAACCCACTGTACCTTGTGCATTCCATCTGGAATTTTCTTCTGTTGAAAGGAAGGTGCTGGGTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000575126.1 |
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| CDS CCA 90 bp | CAACAGAAGAAAATTCCAGATGGAATGCACAAGGTACAGTGGGTTTaGAGGCATGGAGAAGCCGGTAGAACTTCCTCCTTGGAGGCTTTC | + |
|
Preference number: 5 (lower is better) Translates to: QQKKIPDGMHKVQWV*RHGEAGRTSSLEAF Trigger: GAAAGCCTCCAAGGAGGAAGTTCTACCGGCTTCTCCATGCCTCCAAACCCACTGTACCTTGTGCATTCCATCTGGAATTTTCTTCTGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000575126.1 |
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| CDS CCA 72 bp | AAAATTCCAGATGGAATGCACAAGGTACAGTGGGTTTaGAGGCATGGAGAAGCCGGTAGAACTTCCTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: KIPDGMHKVQWV*RHGEAGRTSSL Trigger: CAAGGAGGAAGTTCTACCGGCTTCTCCATGCCTCCAAACCCACTGTACCTTGTGCATTCCATCTGGAATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000575126.1 |
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| CDS CCA 72 bp | CAGAAGAAAATTCCAGATGGAATGCACAAGGTACAGTaGGTTTGGAGGCATGGAGAAGCCGGTAGAACTTCC | + |
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Preference number: 6 (lower is better) Translates to: QKKIPDGMHKVQ*VWRHGEAGRTS Trigger: GGAAGTTCTACCGGCTTCTCCATGCCTCCAAACCCACTGTACCTTGTGCATTCCATCTGGAATTTTCTTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000575126.1 |
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