Pregenerated sensors for LINC01970 (Homo sapiens)
Ensembl gene IDs: ENSG00000265692Ensembl transcript IDs: ENST00000581489.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CATTCGCAGCCGACGTTGCGGAGGCGCAGGAAAAGGGCGAGCAGGTaGCTCAGGGACACCACTTCCAACCGCACGCCGATCGCCGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: HSQPTLRRRRKRASR*LRDTTSNRTPIAGS Trigger: GGAGCCGGCGATCGGCGTGCGGTTGGAAGTGGTGTCCCTGAGGCACCTGCTCGCCCTTTTCCTGCGCCTCCGCAACGTCGGCTGCGAATG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS GCA 90 bp | CGATCCTCCCGGGCGTCCTTTAGGAGACTCATTCGCAGCCGACGTTaGGGAGGCGCAGGAAAAGGGCGAGCAGGTGCCTCAGGGACACCA | + |
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Preference number: 5 (lower is better) Translates to: RSSRASFRRLIRSRR*GGAGKGRAGASGTP Trigger: TGGTGTCCCTGAGGCACCTGCTCGCCCTTTTCCTGCGCCTCCGCAACGTCGGCTGCGAATGAGTCTCCTAAAGGACGCCCGGGAGGATCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS CCA 90 bp | TCTTGTCCAAGGAAAGCTCTAGTTACGGCTGGTGGAGCAGGGGTGTaGGGCCAGGGTCGGCAGGGGGAGGAGCTGCGGTTGTTTCAATGC | + |
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Preference number: 5 (lower is better) Translates to: SCPRKALVTAGGAGV*GQGRQGEELRLFQC Trigger: GCATTGAAACAACCGCAGCTCCTCCCCCTGCCGACCCTGGCCCCACACCCCTGCTCCACCAGCCGTAACTAGAGCTTTCCTTGGACAAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS GCA 90 bp | AAGATCTTCTACGTGAAACAAAGGAGCACTGAGCGAGGGGAGCTCTaGTCAGAAAGGACCATCTTGCATCACTGGTACGGCCCGGCCCGC | + |
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Preference number: 5 (lower is better) Translates to: KIFYVKQRSTERGEL*SERTILHHWYGPAR Trigger: GCGGGCCGGGCCGTACCAGTGATGCAAGATGGTCCTTTCTGAGCAGAGCTCCCCTCGCTCAGTGCTCCTTTGTTTCACGTAGAAGATCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS TCA 90 bp | CTGGGCTGCACTGGCCACACAGTCCCCTCAAGAAGATCTTCTACGTaGAACAAAGGAGCACTGAGCGAGGGGAGCTCTGCTCAGAAAGGA | + |
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Preference number: 5 (lower is better) Translates to: LGCTGHTVPSRRSST*NKGALSEGSSAQKG Trigger: TCCTTTCTGAGCAGAGCTCCCCTCGCTCAGTGCTCCTTTGTTTCACGTAGAAGATCTTCTTGAGGGGACTGTGTGGCCAGTGCAGCCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS CCA 90 bp | TACAATTGGAAGGCTAGTGGGCCGGTGCAGAATCTCGCTGACTTTTaGGTGAGCATGTTGAGGGCCCCCTGCGTCAGCTGCTCTTCTGTT | + |
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Preference number: 5 (lower is better) Translates to: YNWKASGPVQNLADF*VSMLRAPCVSCSSV Trigger: AACAGAAGAGCAGCTGACGCAGGGGGCCCTCAACATGCTCACCCAAAAGTCAGCGAGATTCTGCACCGGCCCACTAGCCTTCCAATTGTA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS TCA 90 bp | ACACAGTCCCCTCAAGAAGATCTTCTACGTGAAACAAAGGAGCACTaGGCGAGGGGAGCTCTGCTCAGAAAGGACCATCTTGCATCACTG | + |
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Preference number: 5 (lower is better) Translates to: TQSPQEDLLRETKEH*ARGALLRKDHLASL Trigger: CAGTGATGCAAGATGGTCCTTTCTGAGCAGAGCTCCCCTCGCTCAGTGCTCCTTTGTTTCACGTAGAAGATCTTCTTGAGGGGACTGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS CCA 90 bp | ACGACTTACTTTCACCAGGCCTGGCCTGAGGTCCTGTTTATAATTTaGTATTTTATTGCCACAGAGCCTGTTCTTAGTCTTATGATCTCT | + |
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Preference number: 5 (lower is better) Translates to: TTYFHQAWPEVLFII*YFIATEPVLSLMIS Trigger: AGAGATCATAAGACTAAGAACAGGCTCTGTGGCAATAAAATACCAAATTATAAACAGGACCTCAGGCCAGGCCTGGTGAAAGTAAGTCGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS GCA 72 bp | CCGACGTTGCGGAGGCGCAGGAAAAGGGCGAGCAGGTaGCTCAGGGACACCACTTCCAACCGCACGCCGATC | + |
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Preference number: 6 (lower is better) Translates to: PTLRRRRKRASR*LRDTTSNRTPI Trigger: GATCGGCGTGCGGTTGGAAGTGGTGTCCCTGAGGCACCTGCTCGCCCTTTTCCTGCGCCTCCGCAACGTCGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS GCA 72 bp | CGGGCGTCCTTTAGGAGACTCATTCGCAGCCGACGTTaGGGAGGCGCAGGAAAAGGGCGAGCAGGTGCCTCA | + |
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Preference number: 6 (lower is better) Translates to: RASFRRLIRSRR*GGAGKGRAGAS Trigger: TGAGGCACCTGCTCGCCCTTTTCCTGCGCCTCCGCAACGTCGGCTGCGAATGAGTCTCCTAAAGGACGCCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS CCA 72 bp | AAGGCTAGTGGGCCGGTGCAGAATCTCGCTGACTTTTaGGTGAGCATGTTGAGGGCCCCCTGCGTCAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: KASGPVQNLADF*VSMLRAPCVSC Trigger: GCAGCTGACGCAGGGGGCCCTCAACATGCTCACCCAAAAGTCAGCGAGATTCTGCACCGGCCCACTAGCCTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS CAA 90 bp | GCTAGTGGGCCGGTGCAGAATCTCGCTGACTTTTGGGTGAGCATGTaGAGGGCCCCCTGCGTCAGCTGCTCTTCTGTTGAACGGTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: ASGPVQNLADFWVSM*RAPCVSCSSVERCR Trigger: CCTGCACCGTTCAACAGAAGAGCAGCTGACGCAGGGGGCCCTCAACATGCTCACCCAAAAGTCAGCGAGATTCTGCACCGGCCCACTAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS TCA 72 bp | CAATTCTGTCTAAACCACACAAGGGAGGGGGTAGAATaGGGTGCCTCTGACCTACCATCCCGTCACGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: QFCLNHTREGVE*GASDLPSRHGW Trigger: CCAGCCGTGACGGGATGGTAGGTCAGAGGCACCTCATTCTACCCCCTCCCTTGTGTGGTTTAGACAGAATTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS TCA 72 bp | ACTGGCCACACAGTCCCCTCAAGAAGATCTTCTACGTaGAACAAAGGAGCACTGAGCGAGGGGAGCTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: TGHTVPSRRSST*NKGALSEGSSA Trigger: AGCAGAGCTCCCCTCGCTCAGTGCTCCTTTGTTTCACGTAGAAGATCTTCTTGAGGGGACTGTGTGGCCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS GCA 72 bp | TACGTGAAACAAAGGAGCACTGAGCGAGGGGAGCTCTaGTCAGAAAGGACCATCTTGCATCACTGGTACGGC | + |
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Preference number: 6 (lower is better) Translates to: YVKQRSTERGEL*SERTILHHWYG Trigger: GCCGTACCAGTGATGCAAGATGGTCCTTTCTGAGCAGAGCTCCCCTCGCTCAGTGCTCCTTTGTTTCACGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS GCA 72 bp | GCCTTTAGAACAGAGTTGATTCTTCACGTGCAGGGATaGACGACTTACTTTCACCAGGCCTGGCCTGAGGTC | + |
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Preference number: 6 (lower is better) Translates to: AFRTELILHVQG*TTYFHQAWPEV Trigger: GACCTCAGGCCAGGCCTGGTGAAAGTAAGTCGTGCATCCCTGCACGTGAAGAATCAACTCTGTTCTAAAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS TCA 72 bp | CCTCAAGAAGATCTTCTACGTGAAACAAAGGAGCACTaGGCGAGGGGAGCTCTGCTCAGAAAGGACCATCTT | + |
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Preference number: 6 (lower is better) Translates to: PQEDLLRETKEH*ARGALLRKDHL Trigger: AAGATGGTCCTTTCTGAGCAGAGCTCCCCTCGCTCAGTGCTCCTTTGTTTCACGTAGAAGATCTTCTTGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS TCA 72 bp | GCAGGGATGCACGACTTACTTTCACCAGGCCTGGCCTaGGGTCCTGTTTATAATTTGGTATTTTATTGCCAC | + |
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Preference number: 6 (lower is better) Translates to: AGMHDLLSPGLA*GPVYNLVFYCH Trigger: GTGGCAATAAAATACCAAATTATAAACAGGACCTCAGGCCAGGCCTGGTGAAAGTAAGTCGTGCATCCCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS CAA 72 bp | GTCTCTTATCAGGGAAAAGTTACTGAAACGAGTCTCTaGTCCAAGGAAAGCTCTAGTTACGGCTGGTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: VSYQGKVTETSL*SKESSSYGWWS Trigger: GCTCCACCAGCCGTAACTAGAGCTTTCCTTGGACAAGAGACTCGTTTCAGTAACTTTTCCCTGATAAGAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS TCA 72 bp | ATACCTCAAAAAGTACTTTCAGGACATGAAGGCACATaGGGGTGCAATCTCTGTAAACCAGCCAGAACCCGT | + |
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Preference number: 6 (lower is better) Translates to: IPQKVLSGHEGT*GCNLCKPARTR Trigger: ACGGGTTCTGGCTGGTTTACAGAGATTGCACCCTCATGTGCCTTCATGTCCTGAAAGTACTTTTTGAGGTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS CCA 72 bp | CACGTGCAGGGATGCACGACTTACTTTCACCAGGCCTaGCCTGAGGTCCTGTTTATAATTTGGTATTTTATT | + |
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Preference number: 6 (lower is better) Translates to: HVQGCTTYFHQA*PEVLFIIWYFI Trigger: AATAAAATACCAAATTATAAACAGGACCTCAGGCCAGGCCTGGTGAAAGTAAGTCGTGCATCCCTGCACGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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| CDS CCA 72 bp | TTTCACCAGGCCTGGCCTGAGGTCCTGTTTATAATTTaGTATTTTATTGCCACAGAGCCTGTTCTTAGTCTT | + |
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Preference number: 6 (lower is better) Translates to: FHQAWPEVLFII*YFIATEPVLSL Trigger: AAGACTAAGAACAGGCTCTGTGGCAATAAAATACCAAATTATAAACAGGACCTCAGGCCAGGCCTGGTGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000581489.1 |
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