Pregenerated sensors for LINC01965 (Homo sapiens)
Ensembl gene IDs: ENSG00000256637Ensembl transcript IDs: ENST00000412112.3, ENST00000537492.5, ENST00000544869.5, ENST00000545549.1, ENST00000609391.5, ENST00000655320.1, ENST00000668937.1
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGCCAGACTTCATGTTCACTCACACACCCCTCACTGCTCCACCCCTaGCTAGCCCTTGGCAGACATGGGATCCAGGCATGTAGTGTGTGC | + |
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Preference number: 5 (lower is better) Translates to: GQTSCSLTHPSLLHP*LALGRHGIQACSVC Trigger: GCACACACTACATGCCTGGATCCCATGTCTGCCAAGGGCTAGTCAGGGGTGGAGCAGTGAGGGGTGTGTGAGTGAACATGAAGTCTGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000544869.5 |
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| CDS TCA 90 bp | AGCCACTGTCCACAGAGGTTTATGGCCAGAACAGCAACACTCCACTaGTCCTGGGGATCTTGGGAAAGTCTGTTCAACACTCCCACTATG | + |
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Preference number: 5 (lower is better) Translates to: SHCPQRFMARTATLH*SWGSWESLFNTPTM Trigger: CATAGTGGGAGTGTTGAACAGACTTTCCCAAGATCCCCAGGATCAGTGGAGTGTTGCTGTTCTGGCCATAAACCTCTGTGGACAGTGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000544869.5 ENST00000545549.1 |
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| CDS TCA 90 bp | AGCCACTGTCCACAGAGGTTTATGGCCAGAACAGCAACACTCCACTaGTCTCTATTGGGCCTCTATCTCCGTCTCTTTTCCTGGTGTAGT | + |
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Preference number: 5 (lower is better) Translates to: SHCPQRFMARTATLH*SLLGLYLRLFSWCS Trigger: ACTACACCAGGAAAAGAGACGGAGATAGAGGCCCAATAGAGATCAGTGGAGTGTTGCTGTTCTGGCCATAAACCTCTGTGGACAGTGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000537492.5 |
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| CDS CCA 90 bp | CCCACTCTTCCCATTAGGCAATACATGAAACCCACCTGGGGATCTTaGGAAAGTCTGTTCAACACTCCCACTATGCTTCGTTTTGTTTTT | + |
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Preference number: 5 (lower is better) Translates to: PTLPIRQYMKPTWGS*ESLFNTPTMLRFVF Trigger: AAAAACAAAACGAAGCATAGTGGGAGTGTTGAACAGACTTTCCCAAGATCCCCAGGTGGGTTTCATGTATTGCCTAATGGGAAGAGTGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668937.1 |
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| CDS CCA 90 bp | CACCTTTTGCTTGTTCTGTTCATCTTAATATTTCAAGTGCTACAGTaGCAGTGTCCTGCAAAGCTTCCCCACTTGGCAGAACTGCATGAA | + |
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Preference number: 5 (lower is better) Translates to: HLLLVLFILIFQVLQ*QCPAKLPHLAELHE Trigger: TTCATGCAGTTCTGCCAAGTGGGGAAGCTTTGCAGGACACTGCCACTGTAGCACTTGAAATATTAAGATGAACAGAACAAGCAAAAGGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000537492.5 ENST00000544869.5 |
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| CDS CCA 90 bp | TGGCTTTTGCTTGTTCTGTTCATCTTAATATTTCAAGTGCTACAGTaGCAGTGTCCTGCAAAGCTTCCCCACTTGGCAGAACTGCATGAA | + |
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Preference number: 5 (lower is better) Translates to: WLLLVLFILIFQVLQ*QCPAKLPHLAELHE Trigger: TTCATGCAGTTCTGCCAAGTGGGGAAGCTTTGCAGGACACTGCCACTGTAGCACTTGAAATATTAAGATGAACAGAACAAGCAAAAGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655320.1 |
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| CDS GCA 90 bp | TGTTCAACACTCCCACTATGCTTCGTTTTGTTTTTCTCCTCCCACTaGCAAACCTCTGTGAACTCCAAAGGACATTCAATCTTTCCAGTT | + |
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Preference number: 5 (lower is better) Translates to: CSTLPLCFVLFFSSH*QTSVNSKGHSIFPV Trigger: AACTGGAAAGATTGAATGTCCTTTGGAGTTCACAGAGGTTTGGCAGTGGGAGGAGAAAAACAAAACGAAGCATAGTGGGAGTGTTGAACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000412112.3 ENST00000537492.5 ENST00000544869.5 ENST00000545549.1 ENST00000609391.5 ENST00000668937.1 |
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| CDS CCA 90 bp | ATGCATGATACATTGTATTCCAGTAATTGCCACTGGCTTTCCAAATaGAAACTGAATGATCTTAGTGCAATTACACTCAGGAGAGTACAT | + |
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Preference number: 5 (lower is better) Translates to: MHDTLYSSNCHWLSK*KLNDLSAITLRRVH Trigger: ATGTACTCTCCTGAGTGTAATTGCACTAAGATCATTCAGTTTCCATTTGGAAAGCCAGTGGCAATTACTGGAATACAATGTATCATGCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655320.1 |
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| CDS GCA 90 bp | TTTATATCCAGTGAGCAAATGCATGATACATTGTATTCCAGTAATTaGCACTGGCTTTCCAAATGGAAACTGAATGATCTTAGTGCAATT | + |
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Preference number: 5 (lower is better) Translates to: FISSEQMHDTLYSSN*HWLSKWKLNDLSAI Trigger: AATTGCACTAAGATCATTCAGTTTCCATTTGGAAAGCCAGTGGCAATTACTGGAATACAATGTATCATGCATTTGCTCACTGGATATAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655320.1 |
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| CDS CCA 72 bp | ACAGCATCACAGAGAGCTGGTGCCCATGCCGGCACCTaGAGCTGCCCACCCAGCTGCAGTGGCCAGACTTCA | + |
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Preference number: 6 (lower is better) Translates to: TASQRAGAHAGT*SCPPSCSGQTS Trigger: TGAAGTCTGGCCACTGCAGCTGGGTGGGCAGCTCCAGGTGCCGGCATGGGCACCAGCTCTCTGTGATGCTGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000544869.5 |
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| CDS TCA 72 bp | AGGCATGTAGTGTGTGCTGAGCACAGCCTGGCAGGCTaGGTGAGCAGAACTAGCCCAGTAGGCCCAAGCAAA | + |
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Preference number: 6 (lower is better) Translates to: RHVVCAEHSLAG*VSRTSPVGPSK Trigger: TTTGCTTGGGCCTACTGGGCTAGTTCTGCTCACTCAGCCTGCCAGGCTGTGCTCAGCACACACTACATGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000537492.5 ENST00000544869.5 |
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| CDS GCA 72 bp | TCTAGTGGTTACCAGCCCGCCTTGCAGCACAGGGAATaGCGAGATCTTCAGAGGACCCACAGAGGGACATTT | + |
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Preference number: 6 (lower is better) Translates to: SSGYQPALQHRE*RDLQRTHRGTF Trigger: AAATGTCCCTCTGTGGGTCCTCTGAAGATCTCGGCATTCCCTGTGCTGCAAGGCGGGCTGGTAACCACTAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655320.1 |
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| CDS CAA 72 bp | GGCCAGAACAGCAACACTCCACTGATCCTGGGGATCTaGGGAAAGTCTGTTCAACACTCCCACTATGCTTCG | + |
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Preference number: 6 (lower is better) Translates to: GQNSNTPLILGI*GKSVQHSHYAS Trigger: CGAAGCATAGTGGGAGTGTTGAACAGACTTTCCCAAGATCCCCAGGATCAGTGGAGTGTTGCTGTTCTGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000544869.5 ENST00000545549.1 |
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| CDS TCA 72 bp | CCACAGAGGTTTATGGCCAGAACAGCAACACTCCACTaGTCTCTATTGGGCCTCTATCTCCGTCTCTTTTCC | + |
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Preference number: 6 (lower is better) Translates to: PQRFMARTATLH*SLLGLYLRLFS Trigger: GGAAAAGAGACGGAGATAGAGGCCCAATAGAGATCAGTGGAGTGTTGCTGTTCTGGCCATAAACCTCTGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000537492.5 |
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| CDS TCA 72 bp | CCACAGAGGTTTATGGCCAGAACAGCAACACTCCACTaGTCCTGGGGATCTTGGGAAAGTCTGTTCAACACT | + |
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Preference number: 6 (lower is better) Translates to: PQRFMARTATLH*SWGSWESLFNT Trigger: AGTGTTGAACAGACTTTCCCAAGATCCCCAGGATCAGTGGAGTGTTGCTGTTCTGGCCATAAACCTCTGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000544869.5 ENST00000545549.1 |
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| CDS CCA 72 bp | CCCACTCTTCCCATTAGGCAATACATGAAACCCACCTaGGGATCTTGGGAAAGTCTGTTCAACACTCCCACT | + |
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Preference number: 6 (lower is better) Translates to: PTLPIRQYMKPT*GSWESLFNTPT Trigger: AGTGGGAGTGTTGAACAGACTTTCCCAAGATCCCCAGGTGGGTTTCATGTATTGCCTAATGGGAAGAGTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668937.1 |
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| CDS CAA 72 bp | GTGCTACAGTGGCAGTGTCCTGCAAAGCTTCCCCACTaGGCAGAACTGCATGAACTGATACAGATTCAGAGA | + |
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Preference number: 6 (lower is better) Translates to: VLQWQCPAKLPH*AELHELIQIQR Trigger: TCTCTGAATCTGTATCAGTTCATGCAGTTCTGCCAAGTGGGGAAGCTTTGCAGGACACTGCCACTGTAGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000537492.5 ENST00000544869.5 ENST00000655320.1 |
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| CDS CCA 72 bp | CCCATTAGGCAATACATGAAACCCACCTGGGGATCTTaGGAAAGTCTGTTCAACACTCCCACTATGCTTCGT | + |
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Preference number: 6 (lower is better) Translates to: PIRQYMKPTWGS*ESLFNTPTMLR Trigger: ACGAAGCATAGTGGGAGTGTTGAACAGACTTTCCCAAGATCCCCAGGTGGGTTTCATGTATTGCCTAATGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668937.1 |
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| CDS CAA 90 bp | GAGGTTTATGGCCAGAACAGCAACACTCCACTGATCCTGGGGATCTaGGGAAAGTCTGTTCAACACTCCCACTATGCTTCGTTTTGTTTT | + |
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Preference number: 6 (lower is better) Translates to: EVYGQNSNTPLILGI*GKSVQHSHYASFCF Trigger: AAAACAAAACGAAGCATAGTGGGAGTGTTGAACAGACTTTCCCAAGATCCCCAGGATCAGTGGAGTGTTGCTGTTCTGGCCATAAACCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000544869.5 ENST00000545549.1 |
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| CDS TCA 72 bp | GTGAACAATAGCCCAGGTAAGATAATTCAGCCAGTGTaGAAAGCTGAATCGGTCCCACTCTTCCCATTAGGC | + |
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Preference number: 6 (lower is better) Translates to: VNNSPGKIIQPV*KAESVPLFPLG Trigger: GCCTAATGGGAAGAGTGGGACCGATTCAGCTTTTCACACTGGCTGAATTATCTTACCTGGGCTATTGTTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668937.1 |
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| CDS GCA 72 bp | TTTATAGTCTGGACTTTAGAGACTGAGGCTACAGCCTaGGCTGTCCAATATGTGGGATCTAGATGTGTGGAT | + |
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Preference number: 6 (lower is better) Translates to: FIVWTLETEATA*AVQYVGSRCVD Trigger: ATCCACACATCTAGATCCCACATATTGGACAGCGCAGGCTGTAGCCTCAGTCTCTAAAGTCCAGACTATAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668937.1 |
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| CDS CAA 90 bp | ATATTTCAAGTGCTACAGTGGCAGTGTCCTGCAAAGCTTCCCCACTaGGCAGAACTGCATGAACTGATACAGATTCAGAGAAAGCAAATA | + |
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Preference number: 6 (lower is better) Translates to: IFQVLQWQCPAKLPH*AELHELIQIQRKQI Trigger: TATTTGCTTTCTCTGAATCTGTATCAGTTCATGCAGTTCTGCCAAGTGGGGAAGCTTTGCAGGACACTGCCACTGTAGCACTTGAAATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000537492.5 ENST00000544869.5 ENST00000655320.1 |
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| CDS CAA 90 bp | CTTCTTGCCTCCAGGCTTCTGATGAGAAATTGGCTGATACTTGTATaGAACATCCCTTTTATTTTGTTGAATTGCCTTGCTGTTATTGCT | + |
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Preference number: 6 (lower is better) Translates to: LLASRLLMRNWLILV*NIPFILLNCLAVIA Trigger: AGCAATAACAGCAAGGCAATTCAACAAAATAAAAGGGATGTTCAATACAAGTATCAGCCAATTTCTCATCAGAAGCCTGGAGGCAAGAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000412112.3 |
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| CDS CCA 72 bp | ACATTGTATTCCAGTAATTGCCACTGGCTTTCCAAATaGAAACTGAATGATCTTAGTGCAATTACACTCAGG | + |
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Preference number: 6 (lower is better) Translates to: TLYSSNCHWLSK*KLNDLSAITLR Trigger: CCTGAGTGTAATTGCACTAAGATCATTCAGTTTCCATTTGGAAAGCCAGTGGCAATTACTGGAATACAATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655320.1 |
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| CDS GCA 72 bp | ATATCCTTTCTACCTCAACACATCAAAAGGATACAGTaGAGGTACAAAAGAACACTCGTCTTAATGAAAGGA | + |
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Preference number: 6 (lower is better) Translates to: ISFLPQHIKRIQ*RYKRTLVLMKG Trigger: TCCTTTCATTAAGACGAGTGTTCTTTTGTACCTGCACTGTATCCTTTTGATGTGTTGAGGTAGAAAGGATAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000545549.1 |
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| CDS GCA 72 bp | AGTGAGCAAATGCATGATACATTGTATTCCAGTAATTaGCACTGGCTTTCCAAATGGAAACTGAATGATCTT | + |
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Preference number: 6 (lower is better) Translates to: SEQMHDTLYSSN*HWLSKWKLNDL Trigger: AAGATCATTCAGTTTCCATTTGGAAAGCCAGTGGCAATTACTGGAATACAATGTATCATGCATTTGCTCACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655320.1 |
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| CDS TCA 72 bp | CCTATCTTCGAGTTCACTAATCTGCAAATCCGTTGTTaGTCTCTGCAAGTAATTTTAAAAACTTCAGTTGCT | + |
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Preference number: 6 (lower is better) Translates to: PIFEFTNLQIRC*SLQVILKTSVA Trigger: AGCAACTGAAGTTTTTAAAATTACTTGCAGAGATCAACAACGGATTTGCAGATTAGTGAACTCGAAGATAGG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000412112.3 |
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| CDS CAA 72 bp | GTAGTGAGTCTCCTGACTACTCGTTGTGAATATACTTaGATGAACATGAGGTATCTTTCGTTTTATTATAGT | + |
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Preference number: 6 (lower is better) Translates to: VVSLLTTRCEYT*MNMRYLSFYYS Trigger: ACTATAATAAAACGAAAGATACCTCATGTTCATCAAAGTATATTCACAACGAGTAGTCAGGAGACTCACTAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668937.1 |
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