Pregenerated sensors for LINC01961 (Homo sapiens)
Ensembl gene IDs: ENSG00000234148Ensembl transcript IDs: ENST00000449954.2, ENST00000668674.1, ENST00000671438.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGGAAACTGGGGTGGTGTATCTACAAGCCAAGGAATGTCAGGGCTTaGAGGAAACCCCAGGAGCGAATGGAAAGGCATGGAGCAGATTCT | + |
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Preference number: 5 (lower is better) Translates to: RKLGWCIYKPRNVRA*RKPQERMERHGADS Trigger: AGAATCTGCTCCATGCCTTTCCATTCGCTCCTGGGGTTTCCTGCAAGCCCTGACATTCCTTGGCTTGTAGATACACCACCCCAGTTTCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000449954.2 ENST00000668674.1 ENST00000671438.1 |
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| CDS CCA 90 bp | GAATGTCAGGGCTTGCAGGAAACCCCAGGAGCGAATGGAAAGGCATaGAGCAGATTCTTCCTAGCATCTTCAGAGAGAGCATGGTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: ECQGLQETPGANGKA*SRFFLASSERAWCC Trigger: GCAGCACCATGCTCTCTCTGAAGATGCTAGGAAGAATCTGCTCCATGCCTTTCCATTCGCTCCTGGGGTTTCCTGCAAGCCCTGACATTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000449954.2 ENST00000668674.1 ENST00000671438.1 |
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| CDS TCA 90 bp | GAGTCTGGGAAGGCCAATGTGGCTAGAATTCATAGGGCAGAATATTaGGGAGGAGAGGGCTGTACAGAGACAGAGCTCTGGAAATCTGAA | + |
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Preference number: 5 (lower is better) Translates to: ESGKANVARIHRAEY*GGEGCTETELWKSE Trigger: TTCAGATTTCCAGAGCTCTGTCTCTGTACAGCCCTCTCCTCCTCAATATTCTGCCCTATGAATTCTAGCCACATTGGCCTTCCCAGACTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671438.1 |
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| CDS TCA 90 bp | CACAGGAAGAAAGAATGCAGATGGAGCTCAGAGATCTTCCTGAGTTaGGAAGACAGAACTGTGAGTCTGGGAAGGCCAATGTGGCTAGAA | + |
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Preference number: 5 (lower is better) Translates to: HRKKECRWSSEIFLS*EDRTVSLGRPMWLE Trigger: TTCTAGCCACATTGGCCTTCCCAGACTCACAGTTCTGTCTTCTCAACTCAGGAAGATCTCTGAGCTCCATCTGCATTCTTTCTTCCTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671438.1 |
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| CDS TCA 90 bp | AGCAACAAAGGGAATCAATCACTGGAATCAAGCATCAAAGGGCAGTaGTCCTCAAGAGATGAGAAACAAATGAGGCTAGCCCCACAATTG | + |
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Preference number: 5 (lower is better) Translates to: SNKGNQSLESSIKGQ*SSRDEKQMRLAPQL Trigger: CAATTGTGGGGCTAGCCTCATTTGTTTCTCATCTCTTGAGGATCACTGCCCTTTGATGCTTGATTCCAGTGATTGATTCCCTTTGTTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000671438.1 |
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| CDS TCA 90 bp | ACAGAGACAGAGCTCTGGAAATCTGAAGATAATACTTACCCTCCTTaGCTGTTTAACAGAGTAGTGATCAGAGTATGCAGGTATGAAAAT | + |
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Preference number: 5 (lower is better) Translates to: TETELWKSEDNTYPP*LFNRVVIRVCRYEN Trigger: ATTTTCATACCTGCATACTCTGATCACTACTCTGTTAAACAGTCAAGGAGGGTAAGTATTATCTTCAGATTTCCAGAGCTCTGTCTCTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000671438.1 |
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| CDS CCA 72 bp | ACAGAGAGGAGGCCATGTGATGATGGGGGCGGAAACTaGGGTGGTGTATCTACAAGCCAAGGAATGTCAGGG | + |
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Preference number: 6 (lower is better) Translates to: TERRPCDDGGGN*GGVSTSQGMSG Trigger: CCCTGACATTCCTTGGCTTGTAGATACACCACCCCAGTTTCCGCCCCCATCATCACATGGCCTCCTCTCTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000449954.2 ENST00000668674.1 ENST00000671438.1 |
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| CDS CCA 72 bp | GGAATGTCAGGGCTTGCAGGAAACCCCAGGAGCGAATaGAAAGGCATGGAGCAGATTCTTCCTAGCATCTTC | + |
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Preference number: 6 (lower is better) Translates to: GMSGLAGNPRSE*KGMEQILPSIF Trigger: GAAGATGCTAGGAAGAATCTGCTCCATGCCTTTCCATTCGCTCCTGGGGTTTCCTGCAAGCCCTGACATTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000449954.2 ENST00000668674.1 ENST00000671438.1 |
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| CDS TCA 72 bp | AAGGCCAATGTGGCTAGAATTCATAGGGCAGAATATTaGGGAGGAGAGGGCTGTACAGAGACAGAGCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: KANVARIHRAEY*GGEGCTETELW Trigger: CCAGAGCTCTGTCTCTGTACAGCCCTCTCCTCCTCAATATTCTGCCCTATGAATTCTAGCCACATTGGCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671438.1 |
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| CDS CAA 90 bp | GCACAGGAAGAAAGAATGCAGATGGAGCTCAGAGATCTTCCTGAGTaGAGAAGACAGAACTGTGAGTCTGGGAAGGCCAATGTGGCTAGA | + |
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Preference number: 6 (lower is better) Translates to: AQEERMQMELRDLPE*RRQNCESGKANVAR Trigger: TCTAGCCACATTGGCCTTCCCAGACTCACAGTTCTGTCTTCTCAACTCAGGAAGATCTCTGAGCTCCATCTGCATTCTTTCTTCCTGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671438.1 |
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| CDS TCA 72 bp | CTTCAGAGAGAGCATGGTGCTGCCAACACCTCGTTTTaGACTTCTAGCTTCCAAAACTCTATTGCAGCACAG | + |
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Preference number: 6 (lower is better) Translates to: LQREHGAANTSF*TSSFQNSIAAQ Trigger: CTGTGCTGCAATAGAGTTTTGGAAGCTAGAAGTTCAAAACGAGGTGTTGGCAGCACCATGCTCTCTCTGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000449954.2 |
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| CDS TCA 72 bp | GGAATCAAGCATCAAAGGGCAGTGATCCTCAAGAGATaGGAAACAAATGAGGCTAGCCCCACAATTGACCTC | + |
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Preference number: 6 (lower is better) Translates to: GIKHQRAVILKR*ETNEASPTIDL Trigger: GAGGTCAATTGTGGGGCTAGCCTCATTTGTTTCTCATCTCTTGAGGATCACTGCCCTTTGATGCTTGATTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000671438.1 |
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| CDS CAA 72 bp | GAAAGAATGCAGATGGAGCTCAGAGATCTTCCTGAGTaGAGAAGACAGAACTGTGAGTCTGGGAAGGCCAAT | + |
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Preference number: 6 (lower is better) Translates to: ERMQMELRDLPE*RRQNCESGKAN Trigger: ATTGGCCTTCCCAGACTCACAGTTCTGTCTTCTCAACTCAGGAAGATCTCTGAGCTCCATCTGCATTCTTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671438.1 |
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| CDS TCA 72 bp | GGGAATCAATCACTGGAATCAAGCATCAAAGGGCAGTaGTCCTCAAGAGATGAGAAACAAATGAGGCTAGCC | + |
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Preference number: 6 (lower is better) Translates to: GNQSLESSIKGQ*SSRDEKQMRLA Trigger: GGCTAGCCTCATTTGTTTCTCATCTCTTGAGGATCACTGCCCTTTGATGCTTGATTCCAGTGATTGATTCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671438.1 |
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| CDS TCA 72 bp | GAGCTCTGGAAATCTGAAGATAATACTTACCCTCCTTaGCTGTTTAACAGAGTAGTGATCAGAGTATGCAGG | + |
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Preference number: 6 (lower is better) Translates to: ELWKSEDNTYPP*LFNRVVIRVCR Trigger: CCTGCATACTCTGATCACTACTCTGTTAAACAGTCAAGGAGGGTAAGTATTATCTTCAGATTTCCAGAGCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671438.1 |
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| CDS CAA 72 bp | GCTGTGATTCTCACCCTATCAGGCCCAATTTTCTCTTaGCTTAACAGCTATTTTAGAATACCCTATGCACTA | + |
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Preference number: 6 (lower is better) Translates to: AVILTLSGPIFS*LNSYFRIPYAL Trigger: TAGTGCATAGGGTATTCTAAAATAGCTGTTAAGCAAAGAGAAAATTGGGCCTGATAGGGTGAGAATCACAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000671438.1 |
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| CDS CAA 90 bp | GGTATTAGAGCTGTGATTCTCACCCTATCAGGCCCAATTTTCTCTTaGCTTAACAGCTATTTTAGAATACCCTATGCACTATCTTTAAAT | + |
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Preference number: 6 (lower is better) Translates to: GIRAVILTLSGPIFS*LNSYFRIPYALSLN Trigger: ATTTAAAGATAGTGCATAGGGTATTCTAAAATAGCTGTTAAGCAAAGAGAAAATTGGGCCTGATAGGGTGAGAATCACAGCTCTAATACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000671438.1 |
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