Pregenerated sensors for LINC01958 (Homo sapiens)
Ensembl gene IDs: ENSG00000283436Ensembl transcript IDs: ENST00000637749.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGAAGGAGCCCTAGGATTATCTGGGGTAGCTCCAGCGTAACCACATaGGCCTTAGTGGGACATGACCCTGCTGTCACTAAATTATATCCA | + |
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Preference number: 5 (lower is better) Translates to: RRSPRIIWGSSSVTT*ALVGHDPAVTKLYP Trigger: TGGATATAATTTAGTGACAGCAGGGTCATGTCCCACTAAGGCTCATGTGGTTACGCTGGAGCTACCCCAGATAATCCTAGGGCTCCTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS CCA 90 bp | GGTTGCACTTCATGCCGTTCCTGTATTACTCTATTGACAGGCAGCTaGTGCAGTAATAAAACTGCTATTCCCAGATCTGCCAAGGGCTCA | + |
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Preference number: 5 (lower is better) Translates to: GCTSCRSCITLLTGS*CSNKTAIPRSAKGS Trigger: TGAGCCCTTGGCAGATCTGGGAATAGCAGTTTTATTACTGCACCAGCTGCCTGTCAATAGAGTAATACAGGAACGGCATGAAGTGCAACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS TCA 90 bp | CACGCTGACCTTTATCAGCTTTTGGCTTTTCCATGGGTGCTGGGCTaGAAGCTTTCTAATTGGTGTTCCATTTCTTCCTCACTACAGGTA | + |
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Preference number: 5 (lower is better) Translates to: HADLYQLLAFPWVLG*KLSNWCSISSSLQV Trigger: TACCTGTAGTGAGGAAGAAATGGAACACCAATTAGAAAGCTTTCAGCCCAGCACCCATGGAAAAGCCAAAAGCTGATAAAGGTCAGCGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS GCA 90 bp | TCAAATTTCACGCTGACCTTTATCAGCTTTTGGCTTTTCCATGGGTaGTGGGCTGAAAGCTTTCTAATTGGTGTTCCATTTCTTCCTCAC | + |
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Preference number: 5 (lower is better) Translates to: SNFTLTFISFWLFHG*WAESFLIGVPFLPH Trigger: GTGAGGAAGAAATGGAACACCAATTAGAAAGCTTTCAGCCCAGCACCCATGGAAAAGCCAAAAGCTGATAAAGGTCAGCGTGAAATTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS GCA 90 bp | TTTTTAACAGCTTCCTGGTATATTAGCTTTCTAGGTTGCACTTCATaGCGTTCCTGTATTACTCTATTGACAGGCAGCTGGTGCAGTAAT | + |
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Preference number: 5 (lower is better) Translates to: FLTASWYISFLGCTS*RSCITLLTGSWCSN Trigger: ATTACTGCACCAGCTGCCTGTCAATAGAGTAATACAGGAACGGCATGAAGTGCAACCTAGAAAGCTAATATACCAGGAAGCTGTTAAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS TCA 90 bp | AGTGGGGCTGCCTTGATTAATACTTTGTTTGCAACTTCAGGCCAGTaGTTTCGTCAGTTGTTTCACAAATCTCGACATGAAGGTTTTATT | + |
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Preference number: 5 (lower is better) Translates to: SGAALINTLFATSGQ*FRQLFHKSRHEGFI Trigger: AATAAAACCTTCATGTCGAGATTTGTGAAACAACTGACGAAATCACTGGCCTGAAGTTGCAAACAAAGTATTAATCAAGGCAGCCCCACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS TCA 90 bp | TTTCCTTTGATTTTCAAGGTTCTGTTGAACCTGTTTGGTTATGGATaGATCCTCTTCTCTGTTAAGCTCAACCAAAGCCATAGTGTGATA | + |
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Preference number: 5 (lower is better) Translates to: FPLIFKVLLNLFGYG*ILFSVKLNQSHSVI Trigger: TATCACACTATGGCTTTGGTTGAGCTTAACAGAGAAGAGGATTCATCCATAACCAAACAGGTTCAACAGAACCTTGAAAATCAAAGGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS TCA 72 bp | GCAGACATATGGCATGCCATGGCATGCAGGGCTGCATaGGCAACACTAGGGTCAGCCACAAGGCAGAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: ADIWHAMACRAA*ATLGSATRQKE Trigger: CTCCTTCTGCCTTGTGGCTGACCCTAGTGTTGCTCATGCAGCCCTGCATGCCATGGCATGCCATATGTCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS GCA 72 bp | AACAGCAGACATATGGCATGCCATGGCATGCAGGGCTaGATGAGCAACACTAGGGTCAGCCACAAGGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: NSRHMACHGMQG*MSNTRVSHKAE Trigger: TTCTGCCTTGTGGCTGACCCTAGTGTTGCTCATGCAGCCCTGCATGCCATGGCATGCCATATGTCTGCTGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS TCA 72 bp | CCTAGGATTATCTGGGGTAGCTCCAGCGTAACCACATaGGCCTTAGTGGGACATGACCCTGCTGTCACTAAA | + |
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Preference number: 6 (lower is better) Translates to: PRIIWGSSSVTT*ALVGHDPAVTK Trigger: TTTAGTGACAGCAGGGTCATGTCCCACTAAGGCTCATGTGGTTACGCTGGAGCTACCCCAGATAATCCTAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS TCA 72 bp | CTACCCACTCACCATTTAACGTGTACCGTTTCCTACTaGACATGCAGATGGCATGGCGGTCCCAGATTTCAT | + |
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Preference number: 6 (lower is better) Translates to: LPTHHLTCTVSY*TCRWHGGPRFH Trigger: ATGAAATCTGGGACCGCCATGCCATCTGCATGTTCAGTAGGAAACGGTACACGTTAAATGGTGAGTGGGTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS GCA 72 bp | TGCCGTTCCTGTATTACTCTATTGACAGGCAGCTGGTaGAGTAATAAAACTGCTATTCCCAGATCTGCCAAG | + |
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Preference number: 6 (lower is better) Translates to: CRSCITLLTGSW*SNKTAIPRSAK Trigger: CTTGGCAGATCTGGGAATAGCAGTTTTATTACTGCACCAGCTGCCTGTCAATAGAGTAATACAGGAACGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS GCA 72 bp | GCTTCCTGGTATATTAGCTTTCTAGGTTGCACTTCATaGCGTTCCTGTATTACTCTATTGACAGGCAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: ASWYISFLGCTS*RSCITLLTGSW Trigger: CCAGCTGCCTGTCAATAGAGTAATACAGGAACGGCATGAAGTGCAACCTAGAAAGCTAATATACCAGGAAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS CCA 72 bp | TCATGCCGTTCCTGTATTACTCTATTGACAGGCAGCTaGTGCAGTAATAAAACTGCTATTCCCAGATCTGCC | + |
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Preference number: 6 (lower is better) Translates to: SCRSCITLLTGS*CSNKTAIPRSA Trigger: GGCAGATCTGGGAATAGCAGTTTTATTACTGCACCAGCTGCCTGTCAATAGAGTAATACAGGAACGGCATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS CAA 72 bp | CTAGGTTGCACTTCATGCCGTTCCTGTATTACTCTATaGACAGGCAGCTGGTGCAGTAATAAAACTGCTATT | + |
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Preference number: 6 (lower is better) Translates to: LGCTSCRSCITL*TGSWCSNKTAI Trigger: AATAGCAGTTTTATTACTGCACCAGCTGCCTGTCAATAGAGTAATACAGGAACGGCATGAAGTGCAACCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS CAA 90 bp | ATTAGCTTTCTAGGTTGCACTTCATGCCGTTCCTGTATTACTCTATaGACAGGCAGCTGGTGCAGTAATAAAACTGCTATTCCCAGATCT | + |
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Preference number: 6 (lower is better) Translates to: ISFLGCTSCRSCITL*TGSWCSNKTAIPRS Trigger: AGATCTGGGAATAGCAGTTTTATTACTGCACCAGCTGCCTGTCAATAGAGTAATACAGGAACGGCATGAAGTGCAACCTAGAAAGCTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS TCA 72 bp | GCCTTGATTAATACTTTGTTTGCAACTTCAGGCCAGTaGTTTCGTCAGTTGTTTCACAAATCTCGACATGAA | + |
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Preference number: 6 (lower is better) Translates to: ALINTLFATSGQ*FRQLFHKSRHE Trigger: TTCATGTCGAGATTTGTGAAACAACTGACGAAATCACTGGCCTGAAGTTGCAAACAAAGTATTAATCAAGGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS TCA 72 bp | ATTTTCAAGGTTCTGTTGAACCTGTTTGGTTATGGATaGATCCTCTTCTCTGTTAAGCTCAACCAAAGCCAT | + |
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Preference number: 6 (lower is better) Translates to: IFKVLLNLFGYG*ILFSVKLNQSH Trigger: ATGGCTTTGGTTGAGCTTAACAGAGAAGAGGATTCATCCATAACCAAACAGGTTCAACAGAACCTTGAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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| CDS TCA 72 bp | TTAGAAATTAACCAAATTAATACCCACACCTTCACGTaGAGAAGTCAGATTTCAGGCTCCAATATGCTGGAC | + |
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Preference number: 6 (lower is better) Translates to: LEINQINTHTFT*RSQISGSNMLD Trigger: GTCCAGCATATTGGAGCCTGAAATCTGACTTCTTCACGTGAAGGTGTGGGTATTAATTTGGTTAATTTCTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000637749.1 |
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