Pregenerated sensors for LINC01957 (Homo sapiens)
Ensembl gene IDs: ENSG00000251542Ensembl transcript IDs: ENST00000506392.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTCTCATCTGTGATGCAGCTCCTCTGTAAGCGCAGAAGCCTACCGTaGTCAGCACTCAGATACTGGTGCTTTCATGAGAGATTTTTAGCC | + |
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Preference number: 5 (lower is better) Translates to: LSSVMQLLCKRRSLP*SALRYWCFHERFLA Trigger: GGCTAAAAATCTCTCATGAAAGCACCAGTATCTGAGTGCTGACCACGGTAGGCTTCTGCGCTTACAGAGGAGCTGCATCACAGATGAGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000506392.1 |
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| CDS CCA 90 bp | CTCCTCTGTAAGCGCAGAAGCCTACCGTGGTCAGCACTCAGATACTaGTGCTTTCATGAGAGATTTTTAGCCTCTCCCTTCCAATATATC | + |
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Preference number: 5 (lower is better) Translates to: LLCKRRSLPWSALRY*CFHERFLASPFQYI Trigger: GATATATTGGAAGGGAGAGGCTAAAAATCTCTCATGAAAGCACCAGTATCTGAGTGCTGACCACGGTAGGCTTCTGCGCTTACAGAGGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000506392.1 |
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| CDS GCA 90 bp | CTCTGTAAGCGCAGAAGCCTACCGTGGTCAGCACTCAGATACTGGTaGTTTCATGAGAGATTTTTAGCCTCTCCCTTCCAATATATCCAA | + |
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Preference number: 5 (lower is better) Translates to: LCKRRSLPWSALRYW*FHERFLASPFQYIQ Trigger: TTGGATATATTGGAAGGGAGAGGCTAAAAATCTCTCATGAAAGCACCAGTATCTGAGTGCTGACCACGGTAGGCTTCTGCGCTTACAGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000506392.1 |
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| CDS TCA 90 bp | CGAATTGTCTTCATGTTTATGGGAGGCTTTCTGCTCAATTGTAGTTaGAGTCTTGGTTGTATTTCTCTCATCTGTGATGCAGCTCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: RIVFMFMGGFLLNCS*SLGCISLICDAAPL Trigger: CAGAGGAGCTGCATCACAGATGAGAGAAATACAACCAAGACTTCAACTACAATTGAGCAGAAAGCCTCCCATAAACATGAAGACAATTCG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000506392.1 |
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| CDS CCA 72 bp | GTGATGCAGCTCCTCTGTAAGCGCAGAAGCCTACCGTaGTCAGCACTCAGATACTGGTGCTTTCATGAGAGA | + |
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Preference number: 6 (lower is better) Translates to: VMQLLCKRRSLP*SALRYWCFHER Trigger: TCTCTCATGAAAGCACCAGTATCTGAGTGCTGACCACGGTAGGCTTCTGCGCTTACAGAGGAGCTGCATCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000506392.1 |
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| CDS GCA 72 bp | CGCAGAAGCCTACCGTGGTCAGCACTCAGATACTGGTaGTTTCATGAGAGATTTTTAGCCTCTCCCTTCCAA | + |
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Preference number: 6 (lower is better) Translates to: RRSLPWSALRYW*FHERFLASPFQ Trigger: TTGGAAGGGAGAGGCTAAAAATCTCTCATGAAAGCACCAGTATCTGAGTGCTGACCACGGTAGGCTTCTGCG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000506392.1 |
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| CDS CCA 72 bp | AAGCGCAGAAGCCTACCGTGGTCAGCACTCAGATACTaGTGCTTTCATGAGAGATTTTTAGCCTCTCCCTTC | + |
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Preference number: 6 (lower is better) Translates to: KRRSLPWSALRY*CFHERFLASPF Trigger: GAAGGGAGAGGCTAAAAATCTCTCATGAAAGCACCAGTATCTGAGTGCTGACCACGGTAGGCTTCTGCGCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000506392.1 |
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| CDS GCA 72 bp | AGCATGTTTCTTTCTGACCCTAAGATGAAGTACGTTTaGTACTTCTCTCAGACCTGCCCTATCTGTCACTCT | + |
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Preference number: 6 (lower is better) Translates to: SMFLSDPKMKYV*YFSQTCPICHS Trigger: AGAGTGACAGATAGGGCAGGTCTGAGAGAAGTAGCAAACGTACTTCATCTTAGGGTCAGAAAGAAACATGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000506392.1 |
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| CDS TCA 72 bp | AGAATTATACCAGCATGTTTCTTTCTGACCCTAAGATaGAGTACGTTTGCTACTTCTCTCAGACCTGCCCTA | + |
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Preference number: 6 (lower is better) Translates to: RIIPACFFLTLR*STFATSLRPAL Trigger: TAGGGCAGGTCTGAGAGAAGTAGCAAACGTACTTCATCTTAGGGTCAGAAAGAAACATGCTGGTATAATTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000506392.1 |
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| CDS TCA 72 bp | TTCATGTTTATGGGAGGCTTTCTGCTCAATTGTAGTTaGAGTCTTGGTTGTATTTCTCTCATCTGTGATGCA | + |
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Preference number: 6 (lower is better) Translates to: FMFMGGFLLNCS*SLGCISLICDA Trigger: TGCATCACAGATGAGAGAAATACAACCAAGACTTCAACTACAATTGAGCAGAAAGCCTCCCATAAACATGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000506392.1 |
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| CDS CCA 72 bp | AACTTAAACTCTGGTTACGAATTGTCTTCATGTTTATaGGAGGCTTTCTGCTCAATTGTAGTTGAAGTCTTG | + |
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Preference number: 6 (lower is better) Translates to: NLNSGYELSSCL*EAFCSIVVEVL Trigger: CAAGACTTCAACTACAATTGAGCAGAAAGCCTCCCATAAACATGAAGACAATTCGTAACCAGAGTTTAAGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000506392.1 |
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| CDS CAA 90 bp | GTAACAAAGGATGAGATCCTTTCCAAGGTCAAGTGTTTCGATTTCTaGATTTGTTTTCTTCTCCAGAATAAAGAGGATAAAATAGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: VTKDEILSKVKCFDF*ICFLLQNKEDKIGL Trigger: CAAGCCTATTTTATCCTCTTTATTCTGGAGAAGAAAACAAATCAAGAAATCGAAACACTTGACCTTGGAAAGGATCTCATCCTTTGTTAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000506392.1 |
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| CDS CCA 72 bp | CAGCAGCATTGTATGAAGTTTACAAGACCCCTTACCTaGTTATTTTCTAAGTTAGAATTATACCAGCATGTT | + |
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Preference number: 6 (lower is better) Translates to: QQHCMKFTRPLT*LFSKLELYQHV Trigger: AACATGCTGGTATAATTCTAACTTAGAAAATAACCAGGTAAGGGGTCTTGTAAACTTCATACAATGCTGCTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000506392.1 |
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