Pregenerated sensors for LINC01954 (Homo sapiens)
Ensembl gene IDs: ENSG00000271952Ensembl transcript IDs: ENST00000607419.1, ENST00000652896.1, ENST00000670239.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ATGCCAGGACTGGATGTGAGGGATGGTTTCCCAGCAGCACTAGTGTaGGACCATGGCCGAGAGGGAGACCAGGATCAGACTGAGATACAG | + |
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Preference number: 5 (lower is better) Translates to: MPGLDVRDGFPAALV*DHGREGDQDQTEIQ Trigger: CTGTATCTCAGTCTGATCCTGGTCTCCCTCTCGGCCATGGTCTCACACTAGTGCTGCTGGGAAACCATCCCTCACATCCAGTCCTGGCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000607419.1 ENST00000652896.1 ENST00000670239.1 |
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| CDS GCA 90 bp | AAGTTGCATCTCCCAAGCCCCGGTCCAAAGCACGTTCGATCACTGTaGCTAGATAGTATCCACAGAAGAGGCTCCTCAATTCCTGTGAGC | + |
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Preference number: 5 (lower is better) Translates to: KLHLPSPGPKHVRSL*LDSIHRRGSSIPVS Trigger: GCTCACAGGAATTGAGGAGCCTCTTCTGTGGATACTATCTAGGCACAGTGATCGAACGTGCTTTGGACCGGGGCTTGGGAGATGCAACTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652896.1 |
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| CDS GCA 90 bp | CATTCTGCAGACTACAGAGCTCTTAACACCCCTGAGAAGGGCAAATaGATGCCCTTGTCTCCCAGCAAGTCTCTGGCAAAGCTAAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: HSADYRALNTPEKGK*MPLSPSKSLAKLRP Trigger: TGGCCTTAGCTTTGCCAGAGACTTGCTGGGAGACAAGGGCATGCATTTGCCCTTCTCAGGGGTGTTAAGAGCTCTGTAGTCTGCAGAATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652896.1 |
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| CDS CCA 90 bp | ATGAACTTCAACATGGCGGTAGCAGTTCACGCTGACCTTCTCCCTTaGCCTTGGGCAACTTGCTTTGCCTCTTCAAATTTCTGTTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: MNFNMAVAVHADLLP*PWATCFASSNFCFL Trigger: GAGAAAACAGAAATTTGAAGAGGCAAAGCAAGTTGCCCAAGGCCAAGGGAGAAGGTCAGCGTGAACTGCTACCGCCATGTTGAAGTTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000607419.1 ENST00000670239.1 |
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| CDS GCA 90 bp | GTCACGCAACTTGTAAGTGGCATAAATAAGATTCCACCCCAAACCTaGCTTCTTCCAAATCTGGATGACACTTACACCCAATCTGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: VTQLVSGINKIPPQT*LLPNLDDTYTQSGC Trigger: ACAGCCAGATTGGGTGTAAGTGTCATCCAGATTTGGAAGAAGGCAGGTTTGGGGTGGAATCTTATTTATGCCACTTACAAGTTGCGTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652896.1 |
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| CDS TCA 72 bp | CTGGATGTGAGGGATGGTTTCCCAGCAGCACTAGTGTaGGACCATGGCCGAGAGGGAGACCAGGATCAGACT | + |
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Preference number: 6 (lower is better) Translates to: LDVRDGFPAALV*DHGREGDQDQT Trigger: AGTCTGATCCTGGTCTCCCTCTCGGCCATGGTCTCACACTAGTGCTGCTGGGAAACCATCCCTCACATCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000607419.1 ENST00000652896.1 ENST00000670239.1 |
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| CDS TCA 72 bp | GCTCCTCCACCCTGGTGTCCAGGCAGCTTCTCGCAGTaGAGAGAAGATGAACTTCAACATGGCGGTAGCAGT | + |
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Preference number: 6 (lower is better) Translates to: APPPWCPGSFSQ*REDELQHGGSS Trigger: ACTGCTACCGCCATGTTGAAGTTCATCTTCTCTTCACTGCGAGAAGCTGCCTGGACACCAGGGTGGAGGAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000607419.1 ENST00000670239.1 |
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| CDS GCA 72 bp | CTCCCAAGCCCCGGTCCAAAGCACGTTCGATCACTGTaGCTAGATAGTATCCACAGAAGAGGCTCCTCAATT | + |
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Preference number: 6 (lower is better) Translates to: LPSPGPKHVRSL*LDSIHRRGSSI Trigger: AATTGAGGAGCCTCTTCTGTGGATACTATCTAGGCACAGTGATCGAACGTGCTTTGGACCGGGGCTTGGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652896.1 |
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| CDS GCA 72 bp | GACTACAGAGCTCTTAACACCCCTGAGAAGGGCAAATaGATGCCCTTGTCTCCCAGCAAGTCTCTGGCAAAG | + |
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Preference number: 6 (lower is better) Translates to: DYRALNTPEKGK*MPLSPSKSLAK Trigger: CTTTGCCAGAGACTTGCTGGGAGACAAGGGCATGCATTTGCCCTTCTCAGGGGTGTTAAGAGCTCTGTAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652896.1 |
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| CDS CAA 90 bp | GACTACAGAGCTCTTAACACCCCTGAGAAGGGCAAATGCATGCCCTaGTCTCCCAGCAAGTCTCTGGCAAAGCTAAGGCCAGAAGTTGCA | + |
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Preference number: 6 (lower is better) Translates to: DYRALNTPEKGKCMP*SPSKSLAKLRPEVA Trigger: TGCAACTTCTGGCCTTAGCTTTGCCAGAGACTTGCTGGGAGACAAGGGCATGCATTTGCCCTTCTCAGGGGTGTTAAGAGCTCTGTAGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652896.1 |
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| CDS GCA 72 bp | CTTGTAAGTGGCATAAATAAGATTCCACCCCAAACCTaGCTTCTTCCAAATCTGGATGACACTTACACCCAA | + |
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Preference number: 6 (lower is better) Translates to: LVSGINKIPPQT*LLPNLDDTYTQ Trigger: TTGGGTGTAAGTGTCATCCAGATTTGGAAGAAGGCAGGTTTGGGGTGGAATCTTATTTATGCCACTTACAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652896.1 |
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