Pregenerated sensors for LINC01950 (Homo sapiens)
Ensembl gene IDs: ENSG00000251027Ensembl transcript IDs: ENST00000505997.1, ENST00000513273.1, ENST00000657922.1, ENST00000661979.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTTCATCAAAAGCACTGGAGCAGTGGGAGGCCCAGCAGGAACCTCTaGAGAGTCTGGCAGACACTCCCAGAGCCCCTGGAACTCTGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: LHQKHWSSGRPSRNL*RVWQTLPEPLELWP Trigger: GGGCCAGAGTTCCAGGGGCTCTGGGAGTGTCTGCCAGACTCTTCAGAGGTTCCTGCTGGGCCTCCCACTGCTCCAGTGCTTTTGATGAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000505997.1 |
||
| CDS GCA 90 bp | AACCTTCTCTTCCATTCTCTAGCTCCTTCAGTGAACAGTCCTATTTaGCCCTCAACATCCAGGCACCTGAAGCTGGCAGACACTCCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: NLLFHSLAPSVNSPI*PSTSRHLKLADTPR Trigger: TCTGGGAGTGTCTGCCAGCTTCAGGTGCCTGGATGTTGAGGGGCAAATAGGACTGTTCACTGAAGGAGCTAGAGAATGGAAGAGAAGGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657922.1 |
||
| CDS CCA 90 bp | AAGCCAATCATGGTGGAAGGCAAAGAGGAAGCAAGGTTCTTCACATaGCACACGAGAGAAAAGCACAAGGAGGGGAAACGCCAGACTCTT | + |
|
Preference number: 5 (lower is better) Translates to: KPIMVEGKEEARFFT*HTREKHKEGKRQTL Trigger: AAGAGTCTGGCGTTTCCCCTCCTTGTGCTTTTCTCTCGTGTGCCATGTGAAGAACCTTGCTTCCTCTTTGCCTTCCACCATGATTGGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000657922.1 |
||
| CDS GCA 90 bp | AACCTTCTCTTCCATTCTCTAGCTCCTTCAGTGAACAGTCCTATTTaGCCCTCAACATCCAGGCACCTGAAGAATCATGGTGGAAGGCAA | + |
|
Preference number: 5 (lower is better) Translates to: NLLFHSLAPSVNSPI*PSTSRHLKNHGGRQ Trigger: TTGCCTTCCACCATGATTCTTCAGGTGCCTGGATGTTGAGGGGCAAATAGGACTGTTCACTGAAGGAGCTAGAGAATGGAAGAGAAGGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661979.1 |
||
| CDS CCA 72 bp | CTGACGCTGCCCAGTCACCTCGGAAGCCAATCATGGTaGAAGGCAAAGAGGAAGCAAGGTTCTTCACATGGC | + |
|
Preference number: 6 (lower is better) Translates to: LTLPSHLGSQSW*KAKRKQGSSHG Trigger: GCCATGTGAAGAACCTTGCTTCCTCTTTGCCTTCCACCATGATTGGCTTCCGAGGTGACTGGGCAGCGTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657922.1 |
||
| CDS CCA 72 bp | GGGAATAGTCTAGCTTCATCAAAAGCACTGGAGCAGTaGGAGGCCCAGCAGGAACCTCTGAAGAGTCTGGCA | + |
|
Preference number: 6 (lower is better) Translates to: GNSLASSKALEQ*EAQQEPLKSLA Trigger: TGCCAGACTCTTCAGAGGTTCCTGCTGGGCCTCCCACTGCTCCAGTGCTTTTGATGAAGCTAGACTATTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505997.1 |
||
| CDS CAA 90 bp | CAACCTTCTCTTCCATTCTCTAGCTCCTTCAGTGAACAGTCCTATTaGCCCCTCAACATCCAGGCACCTGAAGCTGGCAGACACTCCCAG | + |
|
Preference number: 6 (lower is better) Translates to: QPSLPFSSSFSEQSY*PLNIQAPEAGRHSQ Trigger: CTGGGAGTGTCTGCCAGCTTCAGGTGCCTGGATGTTGAGGGGCAAATAGGACTGTTCACTGAAGGAGCTAGAGAATGGAAGAGAAGGTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657922.1 |
||
| CDS GCA 72 bp | TTCCATTCTCTAGCTCCTTCAGTGAACAGTCCTATTTaGCCCTCAACATCCAGGCACCTGAAGCTGGCAGAC | + |
|
Preference number: 6 (lower is better) Translates to: FHSLAPSVNSPI*PSTSRHLKLAD Trigger: GTCTGCCAGCTTCAGGTGCCTGGATGTTGAGGGGCAAATAGGACTGTTCACTGAAGGAGCTAGAGAATGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657922.1 |
||
| CDS CAA 72 bp | CTTCCATTCTCTAGCTCCTTCAGTGAACAGTCCTATTaGCCCCTCAACATCCAGGCACCTGAAGCTGGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: LPFSSSFSEQSY*PLNIQAPEAGR Trigger: TCTGCCAGCTTCAGGTGCCTGGATGTTGAGGGGCAAATAGGACTGTTCACTGAAGGAGCTAGAGAATGGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657922.1 |
||
| CDS CAA 90 bp | CAACCTTCTCTTCCATTCTCTAGCTCCTTCAGTGAACAGTCCTATTaGCCCCTCAACATCCAGGCACCTGAAGAATCATGGTGGAAGGCA | + |
|
Preference number: 6 (lower is better) Translates to: QPSLPFSSSFSEQSY*PLNIQAPEESWWKA Trigger: TGCCTTCCACCATGATTCTTCAGGTGCCTGGATGTTGAGGGGCAAATAGGACTGTTCACTGAAGGAGCTAGAGAATGGAAGAGAAGGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661979.1 |
||
| CDS GCA 72 bp | TTCCATTCTCTAGCTCCTTCAGTGAACAGTCCTATTTaGCCCTCAACATCCAGGCACCTGAAGCTTTGTGAA | + |
|
Preference number: 6 (lower is better) Translates to: FHSLAPSVNSPI*PSTSRHLKLCE Trigger: TTCACAAAGCTTCAGGTGCCTGGATGTTGAGGGGCAAATAGGACTGTTCACTGAAGGAGCTAGAGAATGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000513273.1 |
||