Pregenerated sensors for LINC01949 (Homo sapiens)
Ensembl gene IDs: ENSG00000288569Ensembl transcript IDs: ENST00000445770.3, ENST00000611331.1
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGTGGACATCAGACTGCTGTGCTGGCAGCGAGAATTTCAACCCAGTaGGTCTTAGCTTGTTGGGCTCCGTGGGGGTGGGATCTGCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: GGHQTAVLAARISTQ*VLACWAPWGWDLLS Trigger: GCTCAGCAGATCCCACCCCCACGGAGCCCAACAAGCTAAGACCCACTGGGTTGAAATTCTCGCTGCCAGCACAGCAGTCTGATGTCCACC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS CCA 90 bp | TCCCATTTTGCAATCCCGAACTTCTGGTGGAGACTGGGGTGTCCATaGCCCACTACCCAGTGGCGAGTAAACTCTTTGCTCCCAGACTGT | + |
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Preference number: 5 (lower is better) Translates to: SHFAIPNFWWRLGCP*PTTQWRVNSLLPDC Trigger: ACAGTCTGGGAGCAAAGAGTTTACTCGCCACTGGGTAGTGGGCCATGGACACCCCAGTCTCCACCAGAAGTTCGGGATTGCAAAATGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000445770.3 ENST00000611331.1 |
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| CDS CCA 90 bp | GGTCTGCTGGAGTTTGTTGGAGATCCACTCCAGACCCTGTTTACCTaGGTATCACCAGCGCAGGCTACAGAACAGCACAGATTGCTGCCT | + |
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Preference number: 5 (lower is better) Translates to: GLLEFVGDPLQTLFT*VSPAQATEQHRLLP Trigger: AGGCAGCAATCTGTGCTGTTCTGTAGCCTGCGCTGGTGATACCCAGGTAAACAGGGTCTGGAGTGGATCTCCAACAAACTCCAGCAGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS GCA 90 bp | CCAGGTCTGGCATACAGTTTGAAATTTGCTGCCAGAGTCCCATTTTaGAATCCCGAACTTCTGGTGGAGACTGGGGTGTCCATGGCCCAC | + |
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Preference number: 5 (lower is better) Translates to: PGLAYSLKFAARVPF*NPELLVETGVSMAH Trigger: GTGGGCCATGGACACCCCAGTCTCCACCAGAAGTTCGGGATTGCAAAATGGGACTCTGGCAGCAAATTTCAAACTGTATGCCAGACCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000445770.3 ENST00000611331.1 |
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| CDS CCA 90 bp | CCGAACTTCTGGTGGAGACTGGGGTGTCCATGGCCCACTACCCAGTaGCGAGTAAACTCTTTGCTCCCAGACTGTTGCAAGAAGCTTAAA | + |
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Preference number: 5 (lower is better) Translates to: PNFWWRLGCPWPTTQ*RVNSLLPDCCKKLK Trigger: TTTAAGCTTCTTGCAACAGTCTGGGAGCAAAGAGTTTACTCGCCACTGGGTAGTGGGCCATGGACACCCCAGTCTCCACCAGAAGTTCGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000445770.3 ENST00000611331.1 |
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| CDS GCA 90 bp | GGAAATGCAGAAATTATCTCCTTCTGCGTTGATCTCGCTGGGAGCTaGAGAGCAGAGCTGTTCCTATTCAGCCATCTTTCCAGACACCTC | + |
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Preference number: 5 (lower is better) Translates to: GNAEIISFCVDLAGS*RAELFLFSHLSRHL Trigger: GAGGTGTCTGGAAAGATGGCTGAATAGGAACAGCTCTGCTCTGCAGCTCCCAGCGAGATCAACGCAGAAGGAGATAATTTCTGCATTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS GCA 90 bp | TTTGTTAGTTTTCCTTATAACAGTCAGGCCCCTCTGCTGCAGGTCTaGTGGAGTTTGTTGGAGATCCACTCCAGACCCTGTTTACCTGGG | + |
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Preference number: 5 (lower is better) Translates to: FVSFPYNSQAPLLQV*WSLLEIHSRPCLPG Trigger: CCCAGGTAAACAGGGTCTGGAGTGGATCTCCAACAAACTCCAGCAGACCTGCAGCAGAGGGGCCTGACTGTTATAAGGAAAACTAACAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS CCA 90 bp | AATCTAGAGAGACACTCTTGCTACAGCAACTTTGCCGAGCTGCAGTaGGCTCCACCCAGTTCAAACTTCCCAGCAGCTTTGTTTACACTG | + |
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Preference number: 5 (lower is better) Translates to: NLERHSCYSNFAELQ*APPSSNFPAALFTL Trigger: CAGTGTAAACAAAGCTGCTGGGAAGTTTGAACTGGGTGGAGCCCACTGCAGCTCGGCAAAGTTGCTGTAGCAAGAGTGTCTCTCTAGATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS CCA 90 bp | GTTAGTTTTCCTTATAACAGTCAGGCCCCTCTGCTGCAGGTCTGCTaGAGTTTGTTGGAGATCCACTCCAGACCCTGTTTACCTGGGTAT | + |
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Preference number: 5 (lower is better) Translates to: VSFPYNSQAPLLQVC*SLLEIHSRPCLPGY Trigger: ATACCCAGGTAAACAGGGTCTGGAGTGGATCTCCAACAAACTCCAGCAGACCTGCAGCAGAGGGGCCTGACTGTTATAAGGAAAACTAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS TCA 90 bp | GCTGGGTACTTTAGTTGGAAATGCAGAAATTATCTCCTTCTGCGTTaGTCTCGCTGGGAGCTGCAGAGCAGAGCTGTTCCTATTCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: AGYFSWKCRNYLLLR*SRWELQSRAVPIQP Trigger: TGGCTGAATAGGAACAGCTCTGCTCTGCAGCTCCCAGCGAGATCAACGCAGAAGGAGATAATTTCTGCATTTCCAACTAAAGTACCCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS GCA 90 bp | ATATCACTGCAAAGGGCCAGGTCTGGCATACAGTTTGAAATTTGCTaGCAGAGTCCCATTTTGCAATCCCGAACTTCTGGTGGAGACTGG | + |
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Preference number: 5 (lower is better) Translates to: ISLQRARSGIQFEIC*QSPILQSRTSGGDW Trigger: CCAGTCTCCACCAGAAGTTCGGGATTGCAAAATGGGACTCTGGCAGCAAATTTCAAACTGTATGCCAGACCTGGCCCTTTGCAGTGATAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS GCA 90 bp | CCTTTCTGTTTGTTAGTTTTCCTTATAACAGTCAGGCCCCTCTGCTaGAGGTCTGCTGGAGTTTGTTGGAGATCCACTCCAGACCCTGTT | + |
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Preference number: 5 (lower is better) Translates to: PFCLLVFLITVRPLC*RSAGVCWRSTPDPV Trigger: AACAGGGTCTGGAGTGGATCTCCAACAAACTCCAGCAGACCTGCAGCAGAGGGGCCTGACTGTTATAAGGAAAACTAACAAACAGAAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS GCA 90 bp | TTAACTCTGCAAAGGGCCAGGTCTGGCATACAGTTTGAAATTTGCTaGCAGAGTCCCATTTTGCAATCCCGAACTTCTGGTGGAGACTGG | + |
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Preference number: 5 (lower is better) Translates to: LTLQRARSGIQFEIC*QSPILQSRTSGGDW Trigger: CCAGTCTCCACCAGAAGTTCGGGATTGCAAAATGGGACTCTGGCAGCAAATTTCAAACTGTATGCCAGACCTGGCCCTTTGCAGAGTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611331.1 |
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| CDS TCA 90 bp | CTGGCTTCTTTTAACTCTGCAAAGGGCCAGGTCTGGCATACAGTTTaGAATTTGCTGCCAGAGTCCCATTTTGCAATCCCGAACTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: LASFNSAKGQVWHTV*NLLPESHFAIPNFW Trigger: CCAGAAGTTCGGGATTGCAAAATGGGACTCTGGCAGCAAATTTCAAACTGTATGCCAGACCTGGCCCTTTGCAGAGTTAAAAGAAGCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000611331.1 |
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| CDS GCA 90 bp | GATGAGCTGGGTACTTTAGTTGGAAATGCAGAAATTATCTCCTTCTaGGTTGATCTCGCTGGGAGCTGCAGAGCAGAGCTGTTCCTATTC | + |
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Preference number: 5 (lower is better) Translates to: DELGTLVGNAEIISF*VDLAGSCRAELFLF Trigger: GAATAGGAACAGCTCTGCTCTGCAGCTCCCAGCGAGATCAACGCAGAAGGAGATAATTTCTGCATTTCCAACTAAAGTACCCAGCTCATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS GCA 90 bp | CTTTTAACTCTGCAAAGGGCCAGGTCTGGCATACAGTTTGAAATTTaGTGCCAGAGTCCCATTTTGCAATCCCGAACTTCTGGTGGAGAC | + |
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Preference number: 5 (lower is better) Translates to: LLTLQRARSGIQFEI*CQSPILQSRTSGGD Trigger: GTCTCCACCAGAAGTTCGGGATTGCAAAATGGGACTCTGGCAGCAAATTTCAAACTGTATGCCAGACCTGGCCCTTTGCAGAGTTAAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000611331.1 |
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| CDS GCA 90 bp | TTTATATCACTGCAAAGGGCCAGGTCTGGCATACAGTTTGAAATTTaGTGCCAGAGTCCCATTTTGCAATCCCGAACTTCTGGTGGAGAC | + |
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Preference number: 5 (lower is better) Translates to: FISLQRARSGIQFEI*CQSPILQSRTSGGD Trigger: GTCTCCACCAGAAGTTCGGGATTGCAAAATGGGACTCTGGCAGCAAATTTCAAACTGTATGCCAGACCTGGCCCTTTGCAGTGATATAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS TCA 90 bp | AGGAGAGGAGGAACATTCTTCTATCATTTCACTCTTACCTGTATATaGAGAATATACTTACCTCCCCCGAAGGAGGACAATCTGAAGTCC | + |
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Preference number: 5 (lower is better) Translates to: RRGGTFFYHFTLTCI*RIYLPPPKEDNLKS Trigger: GGACTTCAGATTGTCCTCCTTCGGGGGAGGTAAGTATATTCTTCATATACAGGTAAGAGTGAAATGATAGAAGAATGTTCCTCCTCTCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000445770.3 ENST00000611331.1 |
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| CDS GCA 90 bp | TATCCTTTCTTCTGCTTGATCGATTCAGCTATTGATACTTCTGTATaGTTCACGAAGGTCTCGTGCTGTGTTTTTCAGCTCCATCAGATC | + |
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Preference number: 5 (lower is better) Translates to: YPFFCLIDSAIDTSV*FTKVSCCVFQLHQI Trigger: GATCTGATGGAGCTGAAAAACACAGCACGAGACCTTCGTGAAGCATACAGAAGTATCAATAGCTGAATCGATCAAGCAGAAGAAAGGATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS CCA 90 bp | CATGGATTTATCTACCTTTGGTCTTTGATGCTGGTGACCTTCGGATaGGGTTTTTGTGTGGATGTCCTTTTTGTTGATGTTGACGCTATT | + |
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Preference number: 5 (lower is better) Translates to: HGFIYLWSLMLVTFG*GFCVDVLFVDVDAI Trigger: AATAGCGTCAACATCAACAAAAAGGACATCCACACAAAAACCCCATCCGAAGGTCACCAGCATCAAAGACCAAAGGTAGATAAATCCATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS TCA 72 bp | AGCTTCGTCTCAGACGGGCACCCACCAGATGTCTGTTaGCCCCTGCTGGAAGGTCTCTCCCACTCCGGAGGC | + |
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Preference number: 6 (lower is better) Translates to: SFVSDGHPPDVC*PLLEGLSHSGG Trigger: GCCTCCGGAGTGGGAGAGACCTTCCAGCAGGGGTCAACAGACATCTGGTGGGTGCCCGTCTGAGACGAAGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS CCA 72 bp | AGGGCCCTGGTGGTGCAGGCACCCAAGGGAATCTCCTaGTCTGTGGGTTGCAAAGACCGTGGGGAAAGCATA | + |
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Preference number: 6 (lower is better) Translates to: RALVVQAPKGIS*SVGCKDRGESI Trigger: TATGCTTTCCCCACGGTCTTTGCAACCCACAGACCAGGAGATTCCCTTGGGTGCCTGCACCACCAGGGCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS CCA 72 bp | CTGCCAGAGTCCCATTTTGCAATCCCGAACTTCTGGTaGAGACTGGGGTGTCCATGGCCCACTACCCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: LPESHFAIPNFW*RLGCPWPTTQW Trigger: CCACTGGGTAGTGGGCCATGGACACCCCAGTCTCCACCAGAAGTTCGGGATTGCAAAATGGGACTCTGGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000445770.3 ENST00000611331.1 |
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| CDS CCA 72 bp | CAGACTGCTGTGCTGGCAGCGAGAATTTCAACCCAGTaGGTCTTAGCTTGTTGGGCTCCGTGGGGGTGGGAT | + |
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Preference number: 6 (lower is better) Translates to: QTAVLAARISTQ*VLACWAPWGWD Trigger: ATCCCACCCCCACGGAGCCCAACAAGCTAAGACCCACTGGGTTGAAATTCTCGCTGCCAGCACAGCAGTCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS CCA 72 bp | TGGTGGAGACTGGGGTGTCCATGGCCCACTACCCAGTaGCGAGTAAACTCTTTGCTCCCAGACTGTTGCAAG | + |
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Preference number: 6 (lower is better) Translates to: WWRLGCPWPTTQ*RVNSLLPDCCK Trigger: CTTGCAACAGTCTGGGAGCAAAGAGTTTACTCGCCACTGGGTAGTGGGCCATGGACACCCCAGTCTCCACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000445770.3 ENST00000611331.1 |
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| CDS CCA 72 bp | GCAATCCCGAACTTCTGGTGGAGACTGGGGTGTCCATaGCCCACTACCCAGTGGCGAGTAAACTCTTTGCTC | + |
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Preference number: 6 (lower is better) Translates to: AIPNFWWRLGCP*PTTQWRVNSLL Trigger: GAGCAAAGAGTTTACTCGCCACTGGGTAGTGGGCCATGGACACCCCAGTCTCCACCAGAAGTTCGGGATTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000445770.3 ENST00000611331.1 |
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| CDS CCA 72 bp | TTGCTGCCAGAGTCCCATTTTGCAATCCCGAACTTCTaGTGGAGACTGGGGTGTCCATGGCCCACTACCCAG | + |
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Preference number: 6 (lower is better) Translates to: LLPESHFAIPNF*WRLGCPWPTTQ Trigger: CTGGGTAGTGGGCCATGGACACCCCAGTCTCCACCAGAAGTTCGGGATTGCAAAATGGGACTCTGGCAGCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000445770.3 ENST00000611331.1 |
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| CDS CAA 72 bp | GGTGCAGGCACCCAAGGGAATCTCCTGGTCTGTGGGTaGCAAAGACCGTGGGGAAAGCATAGTATCTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: GAGTQGNLLVCG*QRPWGKHSICA Trigger: GGCACAGATACTATGCTTTCCCCACGGTCTTTGCAACCCACAGACCAGGAGATTCCCTTGGGTGCCTGCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS CAA 72 bp | GCCCTGCTCAGAGAGGAGGAATCTAGAGAGACACTCTaGCTACAGCAACTTTGCCGAGCTGCAGTGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: ALLREEESRETL*LQQLCRAAVGS Trigger: GGAGCCCACTGCAGCTCGGCAAAGTTGCTGTAGCAAGAGTGTCTCTCTAGATTCCTCCTCTCTGAGCAGGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS GCA 72 bp | CCCTGCTCAGAGAGGAGGAATCTAGAGAGACACTCTTaGTACAGCAACTTTGCCGAGCTGCAGTGGGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: PCSERRNLERHS*YSNFAELQWAP Trigger: TGGAGCCCACTGCAGCTCGGCAAAGTTGCTGTAGCAAGAGTGTCTCTCTAGATTCCTCCTCTCTGAGCAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS GCA 72 bp | TATCACCAGCGCAGGCTACAGAACAGCACAGATTGCTaGCTGTTCCTTCCTCTGGAAGCTTCGTCTCAGACG | + |
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Preference number: 6 (lower is better) Translates to: YHQRRLQNSTDC*LFLPLEASSQT Trigger: CGTCTGAGACGAAGCTTCCAGAGGAAGGAACAGGCAGCAATCTGTGCTGTTCTGTAGCCTGCGCTGGTGATA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS CCA 72 bp | AGACACTCTTGCTACAGCAACTTTGCCGAGCTGCAGTaGGCTCCACCCAGTTCAAACTTCCCAGCAGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: RHSCYSNFAELQ*APPSSNFPAAL Trigger: CAAAGCTGCTGGGAAGTTTGAACTGGGTGGAGCCCACTGCAGCTCGGCAAAGTTGCTGTAGCAAGAGTGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS CAA 72 bp | TGGGTATCACCAGCGCAGGCTACAGAACAGCACAGATaGCTGCCTGTTCCTTCCTCTGGAAGCTTCGTCTCA | + |
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Preference number: 6 (lower is better) Translates to: WVSPAQATEQHR*LPVPSSGSFVS Trigger: TGAGACGAAGCTTCCAGAGGAAGGAACAGGCAGCAATCTGTGCTGTTCTGTAGCCTGCGCTGGTGATACCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS CAA 90 bp | AGACTGGGGTGTCCATGGCCCACTACCCAGTGGCGAGTAAACTCTTaGCTCCCAGACTGTTGCAAGAAGCTTAAAGGATGGCCTCCAGAT | + |
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Preference number: 6 (lower is better) Translates to: RLGCPWPTTQWRVNS*LPDCCKKLKGWPPD Trigger: ATCTGGAGGCCATCCTTTAAGCTTCTTGCAACAGTCTGGGAGCAAAGAGTTTACTCGCCACTGGGTAGTGGGCCATGGACACCCCAGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000445770.3 ENST00000611331.1 |
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| CDS CAA 90 bp | GCCAGGTCTGGCATACAGTTTGAAATTTGCTGCCAGAGTCCCATTTaGCAATCCCGAACTTCTGGTGGAGACTGGGGTGTCCATGGCCCA | + |
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Preference number: 6 (lower is better) Translates to: ARSGIQFEICCQSPI*QSRTSGGDWGVHGP Trigger: TGGGCCATGGACACCCCAGTCTCCACCAGAAGTTCGGGATTGCAAAATGGGACTCTGGCAGCAAATTTCAAACTGTATGCCAGACCTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000445770.3 ENST00000611331.1 |
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| CDS GCA 72 bp | TTTCCTTATAACAGTCAGGCCCCTCTGCTGCAGGTCTaGTGGAGTTTGTTGGAGATCCACTCCAGACCCTGT | + |
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Preference number: 6 (lower is better) Translates to: FPYNSQAPLLQV*WSLLEIHSRPC Trigger: ACAGGGTCTGGAGTGGATCTCCAACAAACTCCAGCAGACCTGCAGCAGAGGGGCCTGACTGTTATAAGGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS CCA 72 bp | CCTTATAACAGTCAGGCCCCTCTGCTGCAGGTCTGCTaGAGTTTGTTGGAGATCCACTCCAGACCCTGTTTA | + |
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Preference number: 6 (lower is better) Translates to: PYNSQAPLLQVC*SLLEIHSRPCL Trigger: TAAACAGGGTCTGGAGTGGATCTCCAACAAACTCCAGCAGACCTGCAGCAGAGGGGCCTGACTGTTATAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS CAA 90 bp | TTTCCTTATAACAGTCAGGCCCCTCTGCTGCAGGTCTGCTGGAGTTaGTTGGAGATCCACTCCAGACCCTGTTTACCTGGGTATCACCAG | + |
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Preference number: 6 (lower is better) Translates to: FPYNSQAPLLQVCWS*LEIHSRPCLPGYHQ Trigger: CTGGTGATACCCAGGTAAACAGGGTCTGGAGTGGATCTCCAACAAACTCCAGCAGACCTGCAGCAGAGGGGCCTGACTGTTATAAGGAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS GCA 72 bp | GAGGAATCTAGAGAGACACTCTTGCTACAGCAACTTTaGCGAGCTGCAGTGGGCTCCACCCAGTTCAAACTT | + |
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Preference number: 6 (lower is better) Translates to: EESRETLLLQQL*RAAVGSTQFKL Trigger: AAGTTTGAACTGGGTGGAGCCCACTGCAGCTCGGCAAAGTTGCTGTAGCAAGAGTGTCTCTCTAGATTCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS CAA 72 bp | TGTCCATGGCCCACTACCCAGTGGCGAGTAAACTCTTaGCTCCCAGACTGTTGCAAGAAGCTTAAAGGATGG | + |
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Preference number: 6 (lower is better) Translates to: CPWPTTQWRVNS*LPDCCKKLKGW Trigger: CCATCCTTTAAGCTTCTTGCAACAGTCTGGGAGCAAAGAGTTTACTCGCCACTGGGTAGTGGGCCATGGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000445770.3 ENST00000611331.1 |
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| CDS GCA 72 bp | GCATACAGTTTGAAATTTGCTGCCAGAGTCCCATTTTaGAATCCCGAACTTCTGGTGGAGACTGGGGTGTCC | + |
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Preference number: 6 (lower is better) Translates to: AYSLKFAARVPF*NPELLVETGVS Trigger: GGACACCCCAGTCTCCACCAGAAGTTCGGGATTGCAAAATGGGACTCTGGCAGCAAATTTCAAACTGTATGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000445770.3 ENST00000611331.1 |
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| CDS CAA 72 bp | GGCATACAGTTTGAAATTTGCTGCCAGAGTCCCATTTaGCAATCCCGAACTTCTGGTGGAGACTGGGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: GIQFEICCQSPI*QSRTSGGDWGV Trigger: GACACCCCAGTCTCCACCAGAAGTTCGGGATTGCAAAATGGGACTCTGGCAGCAAATTTCAAACTGTATGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000445770.3 ENST00000611331.1 |
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| CDS TCA 72 bp | TTCTGTGGGCTGCACCCACTGTCTAACCAGTCCCAATaGGATGAGCTGGGTACTTTAGTTGGAAATGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: FCGLHPLSNQSQ*DELGTLVGNAE Trigger: TTCTGCATTTCCAACTAAAGTACCCAGCTCATCTCATTGGGACTGGTTAGACAGTGGGTGCAGCCCACAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS GCA 72 bp | CTGCAAAGGGCCAGGTCTGGCATACAGTTTGAAATTTaGTGCCAGAGTCCCATTTTGCAATCCCGAACTTCT | + |
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Preference number: 6 (lower is better) Translates to: LQRARSGIQFEI*CQSPILQSRTS Trigger: AGAAGTTCGGGATTGCAAAATGGGACTCTGGCAGCAAATTTCAAACTGTATGCCAGACCTGGCCCTTTGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000445770.3 ENST00000611331.1 |
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| CDS GCA 72 bp | GGTACTTTAGTTGGAAATGCAGAAATTATCTCCTTCTaGGTTGATCTCGCTGGGAGCTGCAGAGCAGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: GTLVGNAEIISF*VDLAGSCRAEL Trigger: CAGCTCTGCTCTGCAGCTCCCAGCGAGATCAACGCAGAAGGAGATAATTTCTGCATTTCCAACTAAAGTACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS GCA 72 bp | TTGTTAGTTTTCCTTATAACAGTCAGGCCCCTCTGCTaGAGGTCTGCTGGAGTTTGTTGGAGATCCACTCCA | + |
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Preference number: 6 (lower is better) Translates to: LLVFLITVRPLC*RSAGVCWRSTP Trigger: TGGAGTGGATCTCCAACAAACTCCAGCAGACCTGCAGCAGAGGGGCCTGACTGTTATAAGGAAAACTAACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS TCA 72 bp | TATATCACTGCAAAGGGCCAGGTCTGGCATACAGTTTaGAATTTGCTGCCAGAGTCCCATTTTGCAATCCCG | + |
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Preference number: 6 (lower is better) Translates to: YITAKGQVWHTV*NLLPESHFAIP Trigger: CGGGATTGCAAAATGGGACTCTGGCAGCAAATTTCAAACTGTATGCCAGACCTGGCCCTTTGCAGTGATATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS TCA 72 bp | TTTAGTTGGAAATGCAGAAATTATCTCCTTCTGCGTTaGTCTCGCTGGGAGCTGCAGAGCAGAGCTGTTCCT | + |
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Preference number: 6 (lower is better) Translates to: FSWKCRNYLLLR*SRWELQSRAVP Trigger: AGGAACAGCTCTGCTCTGCAGCTCCCAGCGAGATCAACGCAGAAGGAGATAATTTCTGCATTTCCAACTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS TCA 72 bp | TTTAACTCTGCAAAGGGCCAGGTCTGGCATACAGTTTaGAATTTGCTGCCAGAGTCCCATTTTGCAATCCCG | + |
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Preference number: 6 (lower is better) Translates to: FNSAKGQVWHTV*NLLPESHFAIP Trigger: CGGGATTGCAAAATGGGACTCTGGCAGCAAATTTCAAACTGTATGCCAGACCTGGCCCTTTGCAGAGTTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611331.1 |
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| CDS GCA 72 bp | TGTTTGTTAGTTTTCCTTATAACAGTCAGGCCCCTCTaGTGCAGGTCTGCTGGAGTTTGTTGGAGATCCACT | + |
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Preference number: 6 (lower is better) Translates to: CLLVFLITVRPL*CRSAGVCWRST Trigger: AGTGGATCTCCAACAAACTCCAGCAGACCTGCAGCAGAGGGGCCTGACTGTTATAAGGAAAACTAACAAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS CAA 72 bp | TTATATCACTGCAAAGGGCCAGGTCTGGCATACAGTTaGAAATTTGCTGCCAGAGTCCCATTTTGCAATCCC | + |
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Preference number: 6 (lower is better) Translates to: LYHCKGPGLAYS*KFAARVPFCNP Trigger: GGGATTGCAAAATGGGACTCTGGCAGCAAATTTCAAACTGTATGCCAGACCTGGCCCTTTGCAGTGATATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS GCA 72 bp | TTCGTCAAACTCATTCTCCATCCAGTTTTGTTCTCTTaGTGGCAAGGAGTTGTGATCCTTTGCAGGAGAAAA | + |
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Preference number: 6 (lower is better) Translates to: FVKLILHPVLFS*WQGVVILCRRK Trigger: TTTTCTCCTGCAAAGGATCACAACTCCTTGCCAGCAAGAGAACAAAACTGGATGGAGAATGAGTTTGACGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS GCA 72 bp | TTCTGCTTGATCGATTCAGCTATTGATACTTCTGTATaGTTCACGAAGGTCTCGTGCTGTGTTTTTCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: FCLIDSAIDTSV*FTKVSCCVFQL Trigger: GAGCTGAAAAACACAGCACGAGACCTTCGTGAAGCATACAGAAGTATCAATAGCTGAATCGATCAAGCAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS GCA 72 bp | GCTATTGATACTTCTGTATGCTTCACGAAGGTCTCGTaGTGTGTTTTTCAGCTCCATCAGATCATTTATGTT | + |
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Preference number: 6 (lower is better) Translates to: AIDTSVCFTKVS*CVFQLHQIIYV Trigger: AACATAAATGATCTGATGGAGCTGAAAAACACAGCACGAGACCTTCGTGAAGCATACAGAAGTATCAATAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000445770.3 |
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| CDS TCA 72 bp | GGAACATTCTTCTATCATTTCACTCTTACCTGTATATaGAGAATATACTTACCTCCCCCGAAGGAGGACAAT | + |
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Preference number: 6 (lower is better) Translates to: GTFFYHFTLTCI*RIYLPPPKEDN Trigger: ATTGTCCTCCTTCGGGGGAGGTAAGTATATTCTTCATATACAGGTAAGAGTGAAATGATAGAAGAATGTTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000445770.3 ENST00000611331.1 |
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| CDS TCA 72 bp | AATGAATCAAGGACAGAAGTAGCTATAATAGGAATCTaGTTAGTAAGGGTAGGAATGGAAGGCAAGCAACAG | + |
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Preference number: 6 (lower is better) Translates to: NESRTEVAIIGI*LVRVGMEGKQQ Trigger: CTGTTGCTTGCCTTCCATTCCTACCCTTACTAATCAGATTCCTATTATAGCTACTTCTGTCCTTGATTCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611331.1 |
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