Pregenerated sensors for LINC01942 (Homo sapiens)
Ensembl gene IDs: ENSG00000253428Ensembl transcript IDs: ENST00000521373.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GATGCACGTCCTCCCCTTCAGACCCACCCCACACTCACCCAGCCCTaGGCTCCGGCCACTCCATGGAGCCCGTGGCAAAGGCCTGATGTG | + |
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Preference number: 5 (lower is better) Translates to: DARPPLQTHPTLTQP*APATPWSPWQRPDV Trigger: CACATCAGGCCTTTGCCACGGGCTCCATGGAGTGGCCGGAGCCCAGGGCTGGGTGAGTGTGGGGTGGGTCTGAAGGGGAGGACGTGCATC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000521373.1 |
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| CDS TCA 90 bp | CCAGCCCTGGGCTCCGGCCACTCCATGGAGCCCGTGGCAAAGGCCTaGTGTGTCCTCAGTGAATCCAGGTCAGAGAGCGGTCGAGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: PALGSGHSMEPVAKA*CVLSESRSESGRAA Trigger: TGCTGCTCGACCGCTCTCTGACCTGGATTCACTGAGGACACATCAGGCCTTTGCCACGGGCTCCATGGAGTGGCCGGAGCCCAGGGCTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521373.1 |
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| CDS CCA 90 bp | CCCACACTCACCCAGCCCTGGGCTCCGGCCACTCCATGGAGCCCGTaGCAAAGGCCTGATGTGTCCTCAGTGAATCCAGGTCAGAGAGCG | + |
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Preference number: 5 (lower is better) Translates to: PTLTQPWAPATPWSP*QRPDVSSVNPGQRA Trigger: CGCTCTCTGACCTGGATTCACTGAGGACACATCAGGCCTTTGCCACGGGCTCCATGGAGTGGCCGGAGCCCAGGGCTGGGTGAGTGTGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521373.1 |
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| CDS TCA 90 bp | CGGCCACTCCATGGAGCCCGTGGCAAAGGCCTGATGTGTCCTCAGTaGATCCAGGTCAGAGAGCGGTCGAGCAGCAACTTGGGGAGCCAA | + |
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Preference number: 5 (lower is better) Translates to: RPLHGARGKGLMCPQ*IQVRERSSSNLGSQ Trigger: TTGGCTCCCCAAGTTGCTGCTCGACCGCTCTCTGACCTGGATTCACTGAGGACACATCAGGCCTTTGCCACGGGCTCCATGGAGTGGCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000521373.1 |
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| CDS CCA 90 bp | TGTGTCCTCAGTGAATCCAGGTCAGAGAGCGGTCGAGCAGCAACTTaGGGAGCCAAGTGGATGAAAATCAGCTGGGTGACTTTTGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: CVLSESRSESGRAAT*GAKWMKISWVTFGR Trigger: CCTCCCAAAAGTCACCCAGCTGATTTTCATCCACTTGGCTCCCCAAGTTGCTGCTCGACCGCTCTCTGACCTGGATTCACTGAGGACACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000521373.1 |
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| CDS TCA 90 bp | TACGTCTTTTATACGCCAGGGTGTAGGTCTGCGCCCGGTCTTGGGTaGTGCTCAGTGAATTACCAAGTCTCTTTTTCTTTCACCAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: YVFYTPGCRSAPGLG*CSVNYQVSFSFTRR Trigger: CCTCCTGGTGAAAGAAAAAGAGACTTGGTAATTCACTGAGCATCACCCAAGACCGGGCGCAGACCTACACCCTGGCGTATAAAAGACGTA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000521373.1 |
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| CDS CCA 72 bp | ACCCAGCCCTGGGCTCCGGCCACTCCATGGAGCCCGTaGCAAAGGCCTGATGTGTCCTCAGTGAATCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: TQPWAPATPWSP*QRPDVSSVNPG Trigger: ACCTGGATTCACTGAGGACACATCAGGCCTTTGCCACGGGCTCCATGGAGTGGCCGGAGCCCAGGGCTGGGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521373.1 |
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| CDS TCA 72 bp | GGCTCCGGCCACTCCATGGAGCCCGTGGCAAAGGCCTaGTGTGTCCTCAGTGAATCCAGGTCAGAGAGCGGT | + |
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Preference number: 6 (lower is better) Translates to: GSGHSMEPVAKA*CVLSESRSESG Trigger: ACCGCTCTCTGACCTGGATTCACTGAGGACACATCAGGCCTTTGCCACGGGCTCCATGGAGTGGCCGGAGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521373.1 |
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| CDS CAA 72 bp | GCTAAGGCGATAGGGCTCGGGCACAGGACAGGCGATTaGACATCAGAAAATCCTGCAGGGGCTGGCCTGGCC | + |
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Preference number: 6 (lower is better) Translates to: AKAIGLGHRTGD*TSENPAGAGLA Trigger: GGCCAGGCCAGCCCCTGCAGGATTTTCTGATGTCAAATCGCCTGTCCTGTGCCCGAGCCCTATCGCCTTAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000521373.1 |
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| CDS CAA 90 bp | CCTCATTCTGCTAAGGCGATAGGGCTCGGGCACAGGACAGGCGATTaGACATCAGAAAATCCTGCAGGGGCTGGCCTGGCCTCTAGATGC | + |
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Preference number: 6 (lower is better) Translates to: PHSAKAIGLGHRTGD*TSENPAGAGLASRC Trigger: GCATCTAGAGGCCAGGCCAGCCCCTGCAGGATTTTCTGATGTCAAATCGCCTGTCCTGTGCCCGAGCCCTATCGCCTTAGCAGAATGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000521373.1 |
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| CDS TCA 72 bp | CATGGAGCCCGTGGCAAAGGCCTGATGTGTCCTCAGTaGATCCAGGTCAGAGAGCGGTCGAGCAGCAACTTG | + |
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Preference number: 6 (lower is better) Translates to: HGARGKGLMCPQ*IQVRERSSSNL Trigger: CAAGTTGCTGCTCGACCGCTCTCTGACCTGGATTCACTGAGGACACATCAGGCCTTTGCCACGGGCTCCATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521373.1 |
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| CDS TCA 72 bp | TATACGCCAGGGTGTAGGTCTGCGCCCGGTCTTGGGTaGTGCTCAGTGAATTACCAAGTCTCTTTTTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: YTPGCRSAPGLG*CSVNYQVSFSF Trigger: GAAAGAAAAAGAGACTTGGTAATTCACTGAGCATCACCCAAGACCGGGCGCAGACCTACACCCTGGCGTATA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000521373.1 |
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| CDS TCA 72 bp | GGGAGGAGCCTCTCCAAGAGTAAGTCTGTGCATCTGTaGAACAGGAATGACGTGAGTACTACGTCTTTTATA | + |
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Preference number: 6 (lower is better) Translates to: GRSLSKSKSVHL*NRNDVSTTSFI Trigger: TATAAAAGACGTAGTACTCACGTCATTCCTGTTTCACAGATGCACAGACTTACTCTTGGAGAGGCTCCTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000521373.1 |
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