Pregenerated sensors for LINC01939 (Homo sapiens)

Ensembl gene IDs: ENSG00000228799

Ensembl transcript IDs: ENST00000445279.6, ENST00000449405.2

Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CTACCCTCCGTCCCCAGTACCTGGAACTATGTATGGCACCAGCCCTaGGGCAGGCACGGGCCTTGGCTTCTGAGCTCCAGGGATGCCCCA	+
Preference number: 5 (lower is better) Translates to: LPSVPSTWNYVWHQP*GRHGPWLLSSRDAP Trigger: TGGGGCATCCCTGGAGCTCAGAAGCCAAGGCCCGTGCCTGCCCCAGGGCTGGTGCCATACATAGTTCCAGGTACTGGGGACGGAGGGTAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000445279.6 ENST00000449405.2
CDS CCA 90 bp	GAGCTCCAGGGATGCCCCAGACCCCCTCCCTTAGCTTCTGCTTCTTaGCCTCACATCCAACTGCTGCAACGGCACCTCTGCACCTGCTGG	+
Preference number: 5 (lower is better) Translates to: ELQGCPRPPPLASAS*PHIQLLQRHLCTCW Trigger: CCAGCAGGTGCAGAGGTGCCGTTGCAGCAGTTGGATGTGAGGCCAAGAAGCAGAAGCTAAGGGAGGGGGTCTGGGGCATCCCTGGAGCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000445279.6 ENST00000449405.2
CDS GCA 90 bp	GAACCATGCTTGGGTTCTGTGGTCAAGTCCAGAAGAGGCACGTCCTaGTCAGGGCCCCATCGGCTACCCTCCGTCCCCAGTACCTGGAAC	+
Preference number: 5 (lower is better) Translates to: EPCLGSVVKSRRGTS*SGPHRLPSVPSTWN Trigger: GTTCCAGGTACTGGGGACGGAGGGTAGCCGATGGGGCCCTGAGCAGGACGTGCCTCTTCTGGACTTGACCACAGAACCCAAGCATGGTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000445279.6 ENST00000449405.2
CDS GCA 90 bp	GCCAGGCTGCGTTCCTCCGCCAGGCATGTGATGTTTGGACAGGGGTaGTATTTTCTCTCTCAGAGTCCATCTGTGACTGGGTGCGGTGGC	+
Preference number: 5 (lower is better) Translates to: ARLRSSARHVMFGQG*YFLSQSPSVTGCGG Trigger: GCCACCGCACCCAGTCACAGATGGACTCTGAGAGAGAAAATAGCACCCCTGTCCAAACATCACATGCCTGGCGGAGGAACGCAGCCTGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000445279.6 ENST00000449405.2
CDS CCA 90 bp	GGCTGCACAGGCCAGGCTGCGTTCCTCCGCCAGGCATGTGATGTTTaGACAGGGGTGCTATTTTCTCTCTCAGAGTCCATCTGTGACTGG	+
Preference number: 5 (lower is better) Translates to: GCTGQAAFLRQACDV*TGVLFSLSESICDW Trigger: CCAGTCACAGATGGACTCTGAGAGAGAAAATAGCACCCCTGTCCAAACATCACATGCCTGGCGGAGGAACGCAGCCTGGCCTGTGCAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000445279.6 ENST00000449405.2
CDS TCA 90 bp	AACATTCGGCTGCACAGGCCAGGCTGCGTTCCTCCGCCAGGCATGTaGTGTTTGGACAGGGGTGCTATTTTCTCTCTCAGAGTCCATCTG	+
Preference number: 5 (lower is better) Translates to: NIRLHRPGCVPPPGM*CLDRGAIFSLRVHL Trigger: CAGATGGACTCTGAGAGAGAAAATAGCACCCCTGTCCAAACATCACATGCCTGGCGGAGGAACGCAGCCTGGCCTGTGCAGCCGAATGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000445279.6 ENST00000449405.2
CDS CCA 90 bp	GTACACCCCAGATTCCATTCACCCAGAAGTGCCCATCACCAGCACTaGAGCCAAGTAAGTCCACTCTGGTGTTTGATGTCTCAGCCAGCA	+
Preference number: 5 (lower is better) Translates to: VHPRFHSPRSAHHQH*SQVSPLWCLMSQPA Trigger: TGCTGGCTGAGACATCAAACACCAGAGTGGACTTACTTGGCTCCAGTGCTGGTGATGGGCACTTCTGGGTGAATGGAATCTGGGGTGTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445279.6
CDS TCA 90 bp	TGGAGCCAAGTAAGTCCACTCTGGTGTTTGATGTCTCAGCCAGCATaGGAAGGAAGACATCTGATCGTCCATCAACCCAAGGGCAGGGGT	+
Preference number: 5 (lower is better) Translates to: WSQVSPLWCLMSQPA*EGRHLIVHQPKGRG Trigger: ACCCCTGCCCTTGGGTTGATGGACGATCAGATGTCTTCCTTCTCATGCTGGCTGAGACATCAAACACCAGAGTGGACTTACTTGGCTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445279.6
CDS GCA 90 bp	ACCAGCAAATTTGCTAGTACACCCCAGATTCCATTCACCCAGAAGTaGCCATCACCAGCACTGGAGCCAAGTAAGTCCACTCTGGTGTTT	+
Preference number: 5 (lower is better) Translates to: TSKFASTPQIPFTQK*PSPALEPSKSTLVF Trigger: AAACACCAGAGTGGACTTACTTGGCTCCAGTGCTGGTGATGGGCACTTCTGGGTGAATGGAATCTGGGGTGTACTAGCAAATTTGCTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445279.6
CDS TCA 90 bp	CTTCTTATAAGGACACCAACCACATTGGACCAGGGCCCACCCTTATaGCCTCATTTTCACTTAGTTACCTGTTTAAAGGCCCTATCTCCA	+
Preference number: 5 (lower is better) Translates to: LLIRTPTTLDQGPPL*PHFHLVTCLKALSP Trigger: TGGAGATAGGGCCTTTAAACAGGTAACTAAGTGAAAATGAGGTCATAAGGGTGGGCCCTGGTCCAATGTGGTTGGTGTCCTTATAAGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445279.6
CDS TCA 90 bp	ACAGAAACTTATTTTCTCACAGTGCTGGAAGCTACAAGTCTGAGATaGCAATTTAGTCATTCCTGGACCCTCCTGAGGCTCTCCTTGGCT	+
Preference number: 5 (lower is better) Translates to: TETYFLTVLEATSLR*QFSHSWTLLRLSLA Trigger: AGCCAAGGAGAGCCTCAGGAGGGTCCAGGAATGACTAAATTGTCATCTCAGACTTGTAGCTTCCAGCACTGTGAGAAAATAAGTTTCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445279.6
CDS CCA 72 bp	CGGCTACCCTCCGTCCCCAGTACCTGGAACTATGTATaGCACCAGCCCTGGGGCAGGCACGGGCCTTGGCTT	+
Preference number: 6 (lower is better) Translates to: RLPSVPSTWNYV*HQPWGRHGPWL Trigger: AAGCCAAGGCCCGTGCCTGCCCCAGGGCTGGTGCCATACATAGTTCCAGGTACTGGGGACGGAGGGTAGCCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000445279.6 ENST00000449405.2
CDS CCA 72 bp	GTCCCCAGTACCTGGAACTATGTATGGCACCAGCCCTaGGGCAGGCACGGGCCTTGGCTTCTGAGCTCCAGG	+
Preference number: 6 (lower is better) Translates to: VPSTWNYVWHQP*GRHGPWLLSSR Trigger: CCTGGAGCTCAGAAGCCAAGGCCCGTGCCTGCCCCAGGGCTGGTGCCATACATAGTTCCAGGTACTGGGGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000445279.6 ENST00000449405.2
CDS GCA 72 bp	TTGGGTTCTGTGGTCAAGTCCAGAAGAGGCACGTCCTaGTCAGGGCCCCATCGGCTACCCTCCGTCCCCAGT	+
Preference number: 6 (lower is better) Translates to: LGSVVKSRRGTS*SGPHRLPSVPS Trigger: ACTGGGGACGGAGGGTAGCCGATGGGGCCCTGAGCAGGACGTGCCTCTTCTGGACTTGACCACAGAACCCAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000445279.6 ENST00000449405.2
CDS CCA 72 bp	TCCTGGACCCTCCTGAGGCTCTCCTTGGCTTGTAGATaGGGCCTCTTCCTGTGTCTCATGCAGTCATTCCTG	+
Preference number: 6 (lower is better) Translates to: SWTLLRLSLACR*GLFLCLMQSFL Trigger: CAGGAATGACTGCATGAGACACAGGAAGAGGCCCCATCTACAAGCCAAGGAGAGCCTCAGGAGGGTCCAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445279.6
CDS CCA 72 bp	AAGCAGGAGAATCGCTTGAACCATGCTTGGGTTCTGTaGTCAAGTCCAGAAGAGGCACGTCCTGCTCAGGGC	+
Preference number: 6 (lower is better) Translates to: KQENRLNHAWVL*SSPEEARPAQG Trigger: GCCCTGAGCAGGACGTGCCTCTTCTGGACTTGACCACAGAACCCAAGCATGGTTCAAGCGATTCTCCTGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000445279.6 ENST00000449405.2
CDS GCA 72 bp	CGTTCCTCCGCCAGGCATGTGATGTTTGGACAGGGGTaGTATTTTCTCTCTCAGAGTCCATCTGTGACTGGG	+
Preference number: 6 (lower is better) Translates to: RSSARHVMFGQG*YFLSQSPSVTG Trigger: CCCAGTCACAGATGGACTCTGAGAGAGAAAATAGCACCCCTGTCCAAACATCACATGCCTGGCGGAGGAACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000445279.6 ENST00000449405.2
CDS CAA 72 bp	CAATTTAGTCATTCCTGGACCCTCCTGAGGCTCTCCTaGGCTTGTAGATGGGGCCTCTTCCTGTGTCTCATG	+
Preference number: 6 (lower is better) Translates to: QFSHSWTLLRLS*ACRWGLFLCLM Trigger: CATGAGACACAGGAAGAGGCCCCATCTACAAGCCAAGGAGAGCCTCAGGAGGGTCCAGGAATGACTAAATTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445279.6
CDS GCA 72 bp	TTTGCTAGTACACCCCAGATTCCATTCACCCAGAAGTaGCCATCACCAGCACTGGAGCCAAGTAAGTCCACT	+
Preference number: 6 (lower is better) Translates to: FASTPQIPFTQK*PSPALEPSKST Trigger: AGTGGACTTACTTGGCTCCAGTGCTGGTGATGGGCACTTCTGGGTGAATGGAATCTGGGGTGTACTAGCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445279.6
CDS GCA 72 bp	CCTTGGCTTGTAGATGGGGCCTCTTCCTGTGTCTCATaGAGTCATTCCTGTGTGTGTGTCTGTGTCCTCATT	+
Preference number: 6 (lower is better) Translates to: PWLVDGASSCVS*SHSCVCVCVLI Trigger: AATGAGGACACAGACACACACACAGGAATGACTGCATGAGACACAGGAAGAGGCCCCATCTACAAGCCAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445279.6
CDS TCA 72 bp	GTAAGTCCACTCTGGTGTTTGATGTCTCAGCCAGCATaGGAAGGAAGACATCTGATCGTCCATCAACCCAAG	+
Preference number: 6 (lower is better) Translates to: VSPLWCLMSQPA*EGRHLIVHQPK Trigger: CTTGGGTTGATGGACGATCAGATGTCTTCCTTCTCATGCTGGCTGAGACATCAAACACCAGAGTGGACTTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445279.6
CDS TCA 72 bp	AGGACACCAACCACATTGGACCAGGGCCCACCCTTATaGCCTCATTTTCACTTAGTTACCTGTTTAAAGGCC	+
Preference number: 6 (lower is better) Translates to: RTPTTLDQGPPL*PHFHLVTCLKA Trigger: GGCCTTTAAACAGGTAACTAAGTGAAAATGAGGTCATAAGGGTGGGCCCTGGTCCAATGTGGTTGGTGTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445279.6
CDS TCA 72 bp	TATTTTCTCACAGTGCTGGAAGCTACAAGTCTGAGATaGCAATTTAGTCATTCCTGGACCCTCCTGAGGCTC	+
Preference number: 6 (lower is better) Translates to: YFLTVLEATSLR*QFSHSWTLLRL Trigger: GAGCCTCAGGAGGGTCCAGGAATGACTAAATTGTCATCTCAGACTTGTAGCTTCCAGCACTGTGAGAAAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445279.6

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