Pregenerated sensors for LINC01938 (Homo sapiens)
Ensembl gene IDs: ENSG00000254066Ensembl transcript IDs: ENST00000521341.1, ENST00000523538.2, ENST00000655559.1, ENST00000656517.1, ENST00000658983.1, ENST00000659460.1, ENST00000663122.1, ENST00000665914.1, ENST00000670497.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCTCTCAACTGGTCAATGTGGCGTAGTGACACAGTTCTCACTTACTaGAGTATCTGGAAACATCCTGAATTGGGCTGCTATAGTTTTCCA | + |
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Preference number: 5 (lower is better) Translates to: PLNWSMWRSDTVLTY*SIWKHPELGCYSFP Trigger: TGGAAAACTATAGCAGCCCAATTCAGGATGTTTCCAGATACTTCAGTAAGTGAGAACTGTGTCACTACGCCACATTGACCAGTTGAGAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000523538.2 ENST00000656517.1 ENST00000659460.1 |
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| CDS GCA 90 bp | TCAGCCACCTTTATTAACATATGCTGTGTAGCAGATCCCACTATTTaGCCACTCAGGATCTATTTGCTCCTTCTGCCTTGCTTAGAGTAC | + |
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Preference number: 5 (lower is better) Translates to: SATFINICCVADPTI*PLRIYLLLLPCLEY Trigger: GTACTCTAAGCAAGGCAGAAGGAGCAAATAGATCCTGAGTGGGCAAATAGTGGGATCTGCTACACAGCATATGTTAATAAAGGTGGCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655559.1 |
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| CDS TCA 90 bp | AGCCCAGGCTTTAGTTTACCTGTTCTTCTATGTACTTCTCATAACTaGGTTTGCATTTTGAGCCAAATAGCAGGAGGACAGCAAGAAGTC | + |
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Preference number: 5 (lower is better) Translates to: SPGFSLPVLLCTSHN*VCILSQIAGGQQEV Trigger: GACTTCTTGCTGTCCTCCTGCTATTTGGCTCAAAATGCAAACTCAGTTATGAGAAGTACATAGAAGAACAGGTAAACTAAAGCCTGGGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000521341.1 ENST00000659460.1 ENST00000670497.1 |
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| CDS GCA 90 bp | GGAACAAACTCTGATCTGCCTTCTTTGGATTGTGACTCCAATGTCTaGACCATTTCTTTAAGTGTTTTCAATGCTATTTGGATCAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: GTNSDLPSLDCDSNV*TISLSVFNAIWISL Trigger: CAGACTGATCCAAATAGCATTGAAAACACTTAAAGAAATGGTGCAGACATTGGAGTCACAATCCAAAGAAGGCAGATCAGAGTTTGTTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000521341.1 ENST00000659460.1 ENST00000670497.1 |
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| CDS CCA 90 bp | GACTCCAATGTCTGCACCATTTCTTTAAGTGTTTTCAATGCTATTTaGATCAGTCTGTGTGTGCATTTCCAAGTAGCAATTTTTGGCCTG | + |
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Preference number: 5 (lower is better) Translates to: DSNVCTISLSVFNAI*ISLCVHFQVAIFGL Trigger: CAGGCCAAAAATTGCTACTTGGAAATGCACACACAGACTGATCCAAATAGCATTGAAAACACTTAAAGAAATGGTGCAGACATTGGAGTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000521341.1 ENST00000659460.1 ENST00000670497.1 |
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| CDS CAA 72 bp | TACTTCCACCCACTAAATCGCCTGCAAGAATCTCTCTaGGCCCACCCTAAGTGGAGATATACAGGGAAGGGT | + |
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Preference number: 6 (lower is better) Translates to: YFHPLNRLQESL*AHPKWRYTGKG Trigger: ACCCTTCCCTGTATATCTCCACTTAGGGTGGGCCAAGAGAGATTCTTGCAGGCGATTTAGTGGGTGGAAGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000523538.2 ENST00000655559.1 ENST00000656517.1 ENST00000658983.1 |
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| CDS CAA 90 bp | TTGTTGCTTTACTTCCACCCACTAAATCGCCTGCAAGAATCTCTCTaGGCCCACCCTAAGTGGAGATATACAGGGAAGGGTACTCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: LLLYFHPLNRLQESL*AHPKWRYTGKGTLG Trigger: TCCCAGAGTACCCTTCCCTGTATATCTCCACTTAGGGTGGGCCAAGAGAGATTCTTGCAGGCGATTTAGTGGGTGGAAGTAAAGCAACAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000523538.2 ENST00000655559.1 ENST00000656517.1 ENST00000658983.1 |
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| CDS CAA 90 bp | GCTTTGACATTCGCCTTTGCAACTAGTGGTGATCTTGGGACGCAGTaGAGGTTAGTGAGGCTCAGAAGAAAGTCTATTGGAGGAAGTGGG | + |
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Preference number: 6 (lower is better) Translates to: ALTFAFATSGDLGTQ*RLVRLRRKSIGGSG Trigger: CCCACTTCCTCCAATAGACTTTCTTCTGAGCCTCACTAACCTCAACTGCGTCCCAAGATCACCACTAGTTGCAAAGGCGAATGTCAAAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655559.1 |
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| CDS GCA 72 bp | GGAAATGTAGCCCAGTACAGCCAAGCTGACATAGTTTaGAGAGCCAGCACAATCCACTCCTTACCAATTTGG | + |
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Preference number: 6 (lower is better) Translates to: GNVAQYSQADIV*RASTIHSLPIW Trigger: CCAAATTGGTAAGGAGTGGATTGTGCTGGCTCTGCAAACTATGTCAGCTTGGCTGTACTGGGCTACATTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000523538.2 ENST00000655559.1 ENST00000656517.1 ENST00000658983.1 |
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| CDS CCA 72 bp | AATCGCCTGCAAGAATCTCTCTTGGCCCACCCTAAGTaGAGATATACAGGGAAGGGTACTCTGGGAAATGTA | + |
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Preference number: 6 (lower is better) Translates to: NRLQESLLAHPK*RYTGKGTLGNV Trigger: TACATTTCCCAGAGTACCCTTCCCTGTATATCTCCACTTAGGGTGGGCCAAGAGAGATTCTTGCAGGCGATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000523538.2 ENST00000655559.1 ENST00000656517.1 ENST00000658983.1 |
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| CDS CAA 72 bp | TGGGTGGTTAGGATCTATAACTCTCTTCTTTGCCCGTaGATTCAGAGGCATGAGGAGCCCAAAGTGTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: WVVRIYNSLLCP*IQRHEEPKVFR Trigger: CCTGAACACTTTGGGCTCCTCATGCCTCTGAATCAACGGGCAAAGAAGAGAGTTATAGATCCTAACCACCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000521341.1 ENST00000659460.1 ENST00000663122.1 ENST00000665914.1 ENST00000670497.1 |
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| CDS CAA 72 bp | CCGCAAGGTTTTTGTCTTTGCTTGTGGTGCTGGAGCTaGAAGTCCACAAGGAAGGTAGTTGGAAAGGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: PQGFCLCLWCWS*KSTRKVVGKGR Trigger: TCTTCCCTTTCCAACTACCTTCCTTGTGGACTTCAAGCTCCAGCACCACAAGCAAAGACAAAAACCTTGCGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000521341.1 ENST00000655559.1 ENST00000658983.1 |
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| CDS CAA 90 bp | AATTTCTCCTGGGTGGTTAGGATCTATAACTCTCTTCTTTGCCCGTaGATTCAGAGGCATGAGGAGCCCAAAGTGTTCAGGTGGCAGTCT | + |
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Preference number: 6 (lower is better) Translates to: NFSWVVRIYNSLLCP*IQRHEEPKVFRWQS Trigger: AGACTGCCACCTGAACACTTTGGGCTCCTCATGCCTCTGAATCAACGGGCAAAGAAGAGAGTTATAGATCCTAACCACCCAGGAGAAATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000521341.1 ENST00000659460.1 ENST00000670497.1 |
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| CDS TCA 72 bp | CGCAAGGTTTTTGTCTTTGCTTGTGGTGCTGGAGCTTaGTGGTATAGGTTAGGTCCGTCAGAAGATGAGTCT | + |
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Preference number: 6 (lower is better) Translates to: RKVFVFACGAGA*WYRLGPSEDES Trigger: AGACTCATCTTCTGACGGACCTAACCTATACCATCAAGCTCCAGCACCACAAGCAAAGACAAAAACCTTGCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000523538.2 ENST00000659460.1 ENST00000663122.1 ENST00000665914.1 |
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| CDS CAA 72 bp | TTCGCCTTTGCAACTAGTGGTGATCTTGGGACGCAGTaGAGGTTAGTGAGGCTCAGAAGAAAGTCTATTGGA | + |
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Preference number: 6 (lower is better) Translates to: FAFATSGDLGTQ*RLVRLRRKSIG Trigger: TCCAATAGACTTTCTTCTGAGCCTCACTAACCTCAACTGCGTCCCAAGATCACCACTAGTTGCAAAGGCGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655559.1 |
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| CDS GCA 72 bp | ATTTGCCCACTCAGGATCTATTTGCTCCTTCTGCCTTaGTTAGAGTACCCTGCTTTGGTTTATGGAGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: ICPLRIYLLLLP*LEYPALVYGGR Trigger: TCTTCCTCCATAAACCAAAGCAGGGTACTCTAAGCAAGGCAGAAGGAGCAAATAGATCCTGAGTGGGCAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655559.1 |
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| CDS TCA 72 bp | TGGTCAATGTGGCGTAGTGACACAGTTCTCACTTACTaGAGTATCTGGAAACATCCTGAATTGGGCTGCTAT | + |
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Preference number: 6 (lower is better) Translates to: WSMWRSDTVLTY*SIWKHPELGCY Trigger: ATAGCAGCCCAATTCAGGATGTTTCCAGATACTTCAGTAAGTGAGAACTGTGTCACTACGCCACATTGACCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000523538.2 ENST00000656517.1 ENST00000659460.1 |
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| CDS TCA 72 bp | AGTTTCCGCAAGGTTTTTGTCTTTGCTTGTGGTGCTTaGTGGTATAGGTTAGGTCCGTCAGAAGATGAGTCT | + |
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Preference number: 6 (lower is better) Translates to: SFRKVFVFACGA*WYRLGPSEDES Trigger: AGACTCATCTTCTGACGGACCTAACCTATACCATCAAGCACCACAAGCAAAGACAAAAACCTTGCGGAAACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000656517.1 ENST00000670497.1 |
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| CDS CAA 90 bp | AGATCCCACTATTTGCCCACTCAGGATCTATTTGCTCCTTCTGCCTaGCTTAGAGTACCCTGCTTTGGTTTATGGAGGAAGATAGATAAT | + |
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Preference number: 6 (lower is better) Translates to: RSHYLPTQDLFAPSA*LRVPCFGLWRKIDN Trigger: ATTATCTATCTTCCTCCATAAACCAAAGCAGGGTACTCTAAGCAAGGCAGAAGGAGCAAATAGATCCTGAGTGGGCAAATAGTGGGATCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655559.1 |
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| CDS GCA 72 bp | AAGCCTTATTATACCATCTGTGGTCAGATGTTTACATaGTCAGTTCAGGGTATAGTCCAGCAGTACATACGC | + |
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Preference number: 6 (lower is better) Translates to: KPYYTICGQMFT*SVQGIVQQYIR Trigger: GCGTATGTACTGCTGGACTATACCCTGAACTGAGCATGTAAACATCTGACCACAGATGGTATAATAAGGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000521341.1 ENST00000659460.1 ENST00000670497.1 |
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| CDS TCA 72 bp | TTAAAATATACAAGCTGGAGCCACAGAACAATAAACTaGAATGCATGCCATTTCTTGTTGCCTCTGACCTTG | + |
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Preference number: 6 (lower is better) Translates to: LKYTSWSHRTIN*NACHFLLPLTL Trigger: CAAGGTCAGAGGCAACAAGAAATGGCATGCATTTCAGTTTATTGTTCTGTGGCTCCAGCTTGTATATTTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000521341.1 ENST00000655559.1 ENST00000658983.1 |
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| CDS GCA 72 bp | CTCCAATGTCTGCACCATTTCTTTAAGTGTTTTCAATaGTATTTGGATCAGTCTGTGTGTGCATTTCCAAGT | + |
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Preference number: 6 (lower is better) Translates to: LQCLHHFFKCFQ*YLDQSVCAFPS Trigger: ACTTGGAAATGCACACACAGACTGATCCAAATAGCATTGAAAACACTTAAAGAAATGGTGCAGACATTGGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000521341.1 ENST00000659460.1 ENST00000670497.1 |
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| CDS CAA 90 bp | TTTCTTCCTCCTTCTGTGGTTCAGATGACACCAATATTAGGCTTTTaGACATTGTTTCACAGGACTCAGAGGCTCTGTTCATTTTATTTT | + |
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Preference number: 6 (lower is better) Translates to: FLPPSVVQMTPILGF*TLFHRTQRLCSFYF Trigger: AAAATAAAATGAACAGAGCCTCTGAGTCCTGTGAAACAATGTCAAAAAGCCTAATATTGGTGTCATCTGAACCACAGAAGGAGGAAGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000521341.1 |
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| CDS TCA 72 bp | TTTAGTTTACCTGTTCTTCTATGTACTTCTCATAACTaGGTTTGCATTTTGAGCCAAATAGCAGGAGGACAG | + |
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Preference number: 6 (lower is better) Translates to: FSLPVLLCTSHN*VCILSQIAGGQ Trigger: CTGTCCTCCTGCTATTTGGCTCAAAATGCAAACTCAGTTATGAGAAGTACATAGAAGAACAGGTAAACTAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000521341.1 ENST00000659460.1 ENST00000670497.1 |
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