Pregenerated sensors for LINC01931 (Homo sapiens)
Ensembl gene IDs: ENSG00000162947Ensembl transcript IDs: ENST00000295052.3, ENST00000433174.1, ENST00000658047.1, ENST00000659456.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ACAGTTGGTTCTGGAACCATTGCTGCAAATCCTTCTCCAGCTTGGTaGAGAAGTCACTATGGAGCTGGCACATTGCTGCTGAGTCATCCC | + |
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Preference number: 5 (lower is better) Translates to: TVGSGTIAANPSPAW*RSHYGAGTLLLSHP Trigger: GGGATGACTCAGCAGCAATGTGCCAGCTCCATAGTGACTTCTCCACCAAGCTGGAGAAGGATTTGCAGCAATGGTTCCAGAACCAACTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000295052.3 ENST00000433174.1 ENST00000658047.1 ENST00000659456.1 |
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| CDS CCA 90 bp | CACACAGTTGGTTCTGGAACCATTGCTGCAAATCCTTCTCCAGCTTaGTGGAGAAGTCACTATGGAGCTGGCACATTGCTGCTGAGTCAT | + |
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Preference number: 5 (lower is better) Translates to: HTVGSGTIAANPSPA*WRSHYGAGTLLLSH Trigger: ATGACTCAGCAGCAATGTGCCAGCTCCATAGTGACTTCTCCACCAAGCTGGAGAAGGATTTGCAGCAATGGTTCCAGAACCAACTGTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000295052.3 ENST00000433174.1 ENST00000658047.1 ENST00000659456.1 |
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| CDS GCA 90 bp | AGAGGTTCCACAGCATTTAGGAGAATATTGAAAACTGGGAGCTTCTaGAAGATGAGTGAGGAATTTGTGGGGACTGGCACTGAAGGAGCC | + |
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Preference number: 5 (lower is better) Translates to: RGSTAFRRILKTGSF*KMSEEFVGTGTEGA Trigger: GGCTCCTTCAGTGCCAGTCCCCACAAATTCCTCACTCATCTTGCAGAAGCTCCCAGTTTTCAATATTCTCCTAAATGCTGTGGAACCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000295052.3 ENST00000658047.1 ENST00000659456.1 |
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| CDS GCA 90 bp | GTGACACTTCATCCTGTAGATACACACAGTTGGTTCTGGAACCATTaGTGCAAATCCTTCTCCAGCTTGGTGGAGAAGTCACTATGGAGC | + |
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Preference number: 5 (lower is better) Translates to: VTLHPVDTHSWFWNH*CKSFSSLVEKSLWS Trigger: GCTCCATAGTGACTTCTCCACCAAGCTGGAGAAGGATTTGCAGCAATGGTTCCAGAACCAACTGTGTGTATCTACAGGATGAAGTGTCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658047.1 |
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| CDS CCA 90 bp | CTCAGGTTGGTGACACTTCATCCTGTAGATACACACAGTTGGTTCTaGAACCATTGCTGCAAATCCTTCTCCAGCTTGGTGGAGAAGTCA | + |
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Preference number: 5 (lower is better) Translates to: LRLVTLHPVDTHSWF*NHCCKSFSSLVEKS Trigger: TGACTTCTCCACCAAGCTGGAGAAGGATTTGCAGCAATGGTTCCAGAACCAACTGTGTGTATCTACAGGATGAAGTGTCACCAACCTGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658047.1 |
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| CDS CCA 72 bp | GGTTCTGGAACCATTGCTGCAAATCCTTCTCCAGCTTaGTGGAGAAGTCACTATGGAGCTGGCACATTGCTG | + |
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Preference number: 6 (lower is better) Translates to: GSGTIAANPSPA*WRSHYGAGTLL Trigger: CAGCAATGTGCCAGCTCCATAGTGACTTCTCCACCAAGCTGGAGAAGGATTTGCAGCAATGGTTCCAGAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000295052.3 ENST00000433174.1 ENST00000658047.1 ENST00000659456.1 |
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| CDS CCA 72 bp | GTGACACTTCATCCTGTAGATACACACAGTTGGTTCTaGAACCATTGCTGCAAATCCTTCTCCAGCTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: VTLHPVDTHSWF*NHCCKSFSSLV Trigger: CACCAAGCTGGAGAAGGATTTGCAGCAATGGTTCCAGAACCAACTGTGTGTATCTACAGGATGAAGTGTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658047.1 |
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| CDS CAA 90 bp | AAGATTTTCTCCTCTTCCTCCGTTCCATCTTCAGACTTTGTTCCCTaGACAAGTTCTTACTCACTGATCCCCTGGTGTTTCCTTTGCCAT | + |
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Preference number: 6 (lower is better) Translates to: KIFSSSSVPSSDFVP*TSSYSLIPWCFLCH Trigger: ATGGCAAAGGAAACACCAGGGGATCAGTGAGTAAGAACTTGTCAAGGGAACAAAGTCTGAAGATGGAACGGAGGAAGAGGAGAAAATCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000295052.3 |
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| CDS GCA 72 bp | ACAGCATTTAGGAGAATATTGAAAACTGGGAGCTTCTaGAAGATGAGTGAGGAATTTGTGGGGACTGGCACT | + |
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Preference number: 6 (lower is better) Translates to: TAFRRILKTGSF*KMSEEFVGTGT Trigger: AGTGCCAGTCCCCACAAATTCCTCACTCATCTTGCAGAAGCTCCCAGTTTTCAATATTCTCCTAAATGCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000295052.3 ENST00000658047.1 ENST00000659456.1 |
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| CDS TCA 72 bp | TATTTATTTTCTGCAGAACAGGAGCCTCTTCATGTTTaGTGTCCCAGAAGCAAGGGCCTGTTTCTGTTGAGT | + |
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Preference number: 6 (lower is better) Translates to: YLFSAEQEPLHV*CPRSKGLFLLS Trigger: ACTCAACAGAAACAGGCCCTTGCTTCTGGGACATCAAACATGAAGAGGCTCCTGTTCTGCAGAAAATAAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000433174.1 ENST00000659456.1 |
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| CDS CCA 72 bp | TTGGTAGTTACTGTGTTCTCAGTTTCCCAGGACACGTaGGAGTGGCTAAGTATTTTTAATGATTGTTTCCAC | + |
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Preference number: 6 (lower is better) Translates to: LVVTVFSVSQDT*EWLSIFNDCFH Trigger: GTGGAAACAATCATTAAAAATACTTAGCCACTCCCACGTGTCCTGGGAAACTGAGAACACAGTAACTACCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000295052.3 |
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| CDS CAA 72 bp | TATCCTTTAGGTATCTGGCATGTGACATCATGTAATTaGTTTGGTAGTTACTGTGTTCTCAGTTTCCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: YPLGIWHVTSCN*FGSYCVLSFPG Trigger: TCCTGGGAAACTGAGAACACAGTAACTACCAAACAAATTACATGATGTCACATGCCAGATACCTAAAGGATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000295052.3 |
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