RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC01921 (Homo sapiens)

Ensembl gene IDs: ENSG00000223874

Ensembl transcript IDs: ENST00000456163.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp TGGTGGTCTTGGGCCTGCACCAAAAGCCCTTCTTTGTGCTGGCCCTaGGAGAACACATGGCACAGAAAAGCCCAGATTCAAGCAGCTTCT +
Preference number: 5 (lower is better)
Translates to: WWSWACTKSPSLCWP*ENTWHRKAQIQAAS
Trigger: AGAAGCTGCTTGAATCTGGGCTTTTCTGTGCCATGTGTTCTCCCAGGGCCAGCACAAAGAAGGGCTTTTGGTGCAGGCCCAAGACCACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000456163.2
CDS GCA 90 bp AACTCTGGTCAGCATGAGGTTTTGGTTGAAACAGCAAGATCTGCCTaGTCCTACTGTTGTCCCTCTCTCCTACCGCAGGTCCATTTGTCC +
Preference number: 5 (lower is better)
Translates to: NSGQHEVLVETARSA*SYCCPSLLPQVHLS
Trigger: GGACAAATGGACCTGCGGTAGGAGAGAGGGACAACAGTAGGAGCAGGCAGATCTTGCTGTTTCAACCAAAACCTCATGCTGACCAGAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000456163.2
CDS GCA 90 bp GCCTCTGTGGGGAATATTTCAGATGACATGCTGAACACCTATACCTaGAGGCCTTCACCATCTTCTTCTGTTCCTCAACTCTGGTCAGCA +
Preference number: 5 (lower is better)
Translates to: ASVGNISDDMLNTYT*RPSPSSSVPQLWSA
Trigger: TGCTGACCAGAGTTGAGGAACAGAAGAAGATGGTGAAGGCCTGCAGGTATAGGTGTTCAGCATGTCATCTGAAATATTCCCCACAGAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000456163.2
CDS GCA 72 bp TGGTGGTCTTGGGCCTGCACCAAAAGCCCTTCTTTGTaGTGGCCCTGGGAGAACACATGGCACAGAAAAGCC +
Preference number: 6 (lower is better)
Translates to: WWSWACTKSPSL*WPWENTWHRKA
Trigger: GGCTTTTCTGTGCCATGTGTTCTCCCAGGGCCAGCACAAAGAAGGGCTTTTGGTGCAGGCCCAAGACCACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000456163.2
CDS CCA 72 bp TGGGCCTGCACCAAAAGCCCTTCTTTGTGCTGGCCCTaGGAGAACACATGGCACAGAAAAGCCCAGATTCAA +
Preference number: 6 (lower is better)
Translates to: WACTKSPSLCWP*ENTWHRKAQIQ
Trigger: TTGAATCTGGGCTTTTCTGTGCCATGTGTTCTCCCAGGGCCAGCACAAAGAAGGGCTTTTGGTGCAGGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000456163.2
CDS GCA 72 bp CAGCATGAGGTTTTGGTTGAAACAGCAAGATCTGCCTaGTCCTACTGTTGTCCCTCTCTCCTACCGCAGGTC +
Preference number: 6 (lower is better)
Translates to: QHEVLVETARSA*SYCCPSLLPQV
Trigger: GACCTGCGGTAGGAGAGAGGGACAACAGTAGGAGCAGGCAGATCTTGCTGTTTCAACCAAAACCTCATGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000456163.2
CDS CAA 72 bp TTATGGTGGTCTTGGGCCTGCACCAAAAGCCCTTCTTaGTGCTGGCCCTGGGAGAACACATGGCACAGAAAA +
Preference number: 6 (lower is better)
Translates to: LWWSWACTKSPS*CWPWENTWHRK
Trigger: TTTTCTGTGCCATGTGTTCTCCCAGGGCCAGCACAAAGAAGGGCTTTTGGTGCAGGCCCAAGACCACCATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000456163.2
CDS CAA 90 bp TCTGCCTGCTCCTACTGTTGTCCCTCTCTCCTACCGCAGGTCCATTaGTCCAAAGCAGTCCACCCATCATTCCCTTTATATAGTGGCTTA +
Preference number: 6 (lower is better)
Translates to: SACSYCCPSLLPQVH*SKAVHPSFPLYSGL
Trigger: TAAGCCACTATATAAAGGGAATGATGGGTGGACTGCTTTGGACAAATGGACCTGCGGTAGGAGAGAGGGACAACAGTAGGAGCAGGCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000456163.2
CDS CAA 90 bp ACCATCTTCTTCTGTTCCTCAACTCTGGTCAGCATGAGGTTTTGGTaGAAACAGCAAGATCTGCCTGCTCCTACTGTTGTCCCTCTCTCC +
Preference number: 6 (lower is better)
Translates to: TIFFCSSTLVSMRFW*KQQDLPAPTVVPLS
Trigger: GGAGAGAGGGACAACAGTAGGAGCAGGCAGATCTTGCTGTTTCAACCAAAACCTCATGCTGACCAGAGTTGAGGAACAGAAGAAGATGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000456163.2
CDS CAA 72 bp TCCTACTGTTGTCCCTCTCTCCTACCGCAGGTCCATTaGTCCAAAGCAGTCCACCCATCATTCCCTTTATAT +
Preference number: 6 (lower is better)
Translates to: SYCCPSLLPQVH*SKAVHPSFPLY
Trigger: ATATAAAGGGAATGATGGGTGGACTGCTTTGGACAAATGGACCTGCGGTAGGAGAGAGGGACAACAGTAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000456163.2
CDS CAA 72 bp TTCTGTTCCTCAACTCTGGTCAGCATGAGGTTTTGGTaGAAACAGCAAGATCTGCCTGCTCCTACTGTTGTC +
Preference number: 6 (lower is better)
Translates to: FCSSTLVSMRFW*KQQDLPAPTVV
Trigger: GACAACAGTAGGAGCAGGCAGATCTTGCTGTTTCAACCAAAACCTCATGCTGACCAGAGTTGAGGAACAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000456163.2
CDS GCA 72 bp GGGAATATTTCAGATGACATGCTGAACACCTATACCTaGAGGCCTTCACCATCTTCTTCTGTTCCTCAACTC +
Preference number: 6 (lower is better)
Translates to: GNISDDMLNTYT*RPSPSSSVPQL
Trigger: GAGTTGAGGAACAGAAGAAGATGGTGAAGGCCTGCAGGTATAGGTGTTCAGCATGTCATCTGAAATATTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000456163.2