Pregenerated sensors for LINC01918 (Homo sapiens)
Ensembl gene IDs: ENSG00000226508Ensembl transcript IDs: ENST00000436841.1, ENST00000438148.1, ENST00000452037.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCTGGCCGGCTCCTCTCCCGTTTCTCCATCACAGCCCGTCCTCTCTaGCTCCTCCGTCCCCGCGTGGCCTGCCTGCGCTGGGCCCCGCGC | + |
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Preference number: 5 (lower is better) Translates to: PGRLLSRFSITARPL*LLRPRVACLRWAPR Trigger: GCGCGGGGCCCAGCGCAGGCAGGCCACGCGGGGACGGAGGAGGCAGAGAGGACGGGCTGTGATGGAGAAACGGGAGAGGAGCCGGCCAGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000436841.1 ENST00000438148.1 |
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| CDS GCA 90 bp | CATCACAGCCCGTCCTCTCTGCCTCCTCCGTCCCCGCGTGGCCTCTaGCCAGAGAAACAGGATTTGCACCCAAGCCGCACGTGCCTGCGC | + |
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Preference number: 5 (lower is better) Translates to: HHSPSSLPPPSPRGL*PEKQDLHPSRTCLR Trigger: GCGCAGGCACGTGCGGCTTGGGTGCAAATCCTGTTTCTCTGGGCAGAGGCCACGCGGGGACGGAGGAGGCAGAGAGGACGGGCTGTGATG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452037.1 |
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| CDS GCA 90 bp | CCTGGCCGGCTCCTCTCCCGTTTCTCCATCACAGCCCGTCCTCTCTaGCTCCTCCGTCCCCGCGTGGCCTCTGCCCAGAGAAACAGGATT | + |
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Preference number: 5 (lower is better) Translates to: PGRLLSRFSITARPL*LLRPRVASAQRNRI Trigger: AATCCTGTTTCTCTGGGCAGAGGCCACGCGGGGACGGAGGAGGCAGAGAGGACGGGCTGTGATGGAGAAACGGGAGAGGAGCCGGCCAGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452037.1 |
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| CDS CCA 90 bp | ATGGTGATGGTGGTGGTGGTTGGTGATGGTGGTGACGGTGGCGCCTaGCCGGCTCCTCTCCCGTTTCTCCATCACAGCCCGTCCTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: MVMVVVVGDGGDGGA*PAPLPFLHHSPSSL Trigger: CAGAGAGGACGGGCTGTGATGGAGAAACGGGAGAGGAGCCGGCCAGGCGCCACCGTCACCACCATCACCAACCACCACCACCATCACCAT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000436841.1 ENST00000438148.1 ENST00000452037.1 |
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| CDS CCA 90 bp | GTTTCTCCATCACAGCCCGTCCTCTCTGCCTCCTCCGTCCCCGCGTaGCCTCTGCCCAGAGAAACAGGATTTGCACCCAAGCCGCACGTG | + |
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Preference number: 5 (lower is better) Translates to: VSPSQPVLSASSVPA*PLPRETGFAPKPHV Trigger: CACGTGCGGCTTGGGTGCAAATCCTGTTTCTCTGGGCAGAGGCCACGCGGGGACGGAGGAGGCAGAGAGGACGGGCTGTGATGGAGAAAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452037.1 |
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| CDS CCA 90 bp | CCTAAGAAGGTTCATGCCCTCTGGTGCTGGGCTTCCCAACAGCCCTaGGGCTCTGTCCCTGTGTTTGTTCTGAATGGTCAGCCGTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: PKKVHALWCWASQQP*GSVPVFVLNGQPSL Trigger: CAGGGACGGCTGACCATTCAGAACAAACACAGGGACAGAGCCCCAGGGCTGTTGGGAAGCCCAGCACCAGAGGGCATGAACCTTCTTAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438148.1 |
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| CDS TCA 90 bp | TCCCACAGCCACTTGGCACTGATGGGGTGCTTTCTACACTGCAGATaGATACCATTGCCTGCAGGTCTCTTGGGTGATGTCCCTACAAAA | + |
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Preference number: 5 (lower is better) Translates to: SHSHLALMGCFLHCR*IPLPAGLLGDVPTK Trigger: TTTTGTAGGGACATCACCCAAGAGACCTGCAGGCAATGGTATTCATCTGCAGTGTAGAAAGCACCCCATCAGTGCCAAGTGGCTGTGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436841.1 |
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| CDS TCA 90 bp | AGTGCCAGGACTGGAAAAACTGGAAGCAACCCAGCCATCTCAGTGTaGTTTAGAGGAATGAAATGCCATTGTGCCCCCTTTCCTGATGAG | + |
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Preference number: 5 (lower is better) Translates to: SARTGKTGSNPAISV*FRGMKCHCAPFPDE Trigger: CTCATCAGGAAAGGGGGCACAATGGCATTTCATTCCTCTAAATCACACTGAGATGGCTGGGTTGCTTCCAGTTTTTCCAGTCCTGGCACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000436841.1 ENST00000452037.1 |
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| CDS CCA 90 bp | GGTGCTTTCTACACTGCAGATGAATACCATTGCCTGCAGGTCTCTTaGGTGATGTCCCTACAAAAGTGCCTGTTTTGCATCTATTCTTGG | + |
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Preference number: 5 (lower is better) Translates to: GAFYTADEYHCLQVS*VMSLQKCLFCIYSW Trigger: CCAAGAATAGATGCAAAACAGGCACTTTTGTAGGGACATCACCCAAGAGACCTGCAGGCAATGGTATTCATCTGCAGTGTAGAAAGCACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436841.1 |
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| CDS TCA 90 bp | TTCCTGACTTGGCGCACTCTGTCGCTTTTCCAAAGTAGTACCCAGTaGAAAAGAGATGATCTGATAAAGTTGGCACTGCACAGGGATATG | + |
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Preference number: 5 (lower is better) Translates to: FLTWRTLSLFQSSTQ*KRDDLIKLALHRDM Trigger: CATATCCCTGTGCAGTGCCAACTTTATCAGATCATCTCTTTTTCACTGGGTACTACTTTGGAAAAGCGACAGAGTGCGCCAAGTCAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000436841.1 ENST00000452037.1 |
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| CDS GCA 90 bp | ACATTACTTTATCATCATCATCACCAAGCATGTATAACCGTCCAGTaGCAGGACTGGAAAAACTGGAAGCAACCCAGCCATCTCAGTGTG | + |
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Preference number: 5 (lower is better) Translates to: TLLYHHHHQACITVQ*QDWKNWKQPSHLSV Trigger: CACACTGAGATGGCTGGGTTGCTTCCAGTTTTTCCAGTCCTGGCACTGGACGGTTATACATGCTTGGTGATGATGATGATAAAGTAATGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000436841.1 |
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| CDS TCA 90 bp | CTTTCTACACTGCAGATGAATACCATTGCCTGCAGGTCTCTTGGGTaGTGTCCCTACAAAAGTGCCTGTTTTGCATCTATTCTTGGTATT | + |
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Preference number: 5 (lower is better) Translates to: LSTLQMNTIACRSLG*CPYKSACFASILGI Trigger: AATACCAAGAATAGATGCAAAACAGGCACTTTTGTAGGGACATCACCCAAGAGACCTGCAGGCAATGGTATTCATCTGCAGTGTAGAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436841.1 |
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| CDS GCA 72 bp | CGTCCCCGCGTGGCCTCTGCCCAGAGAAACAGGATTTaGACCCAAGCCGCACGTGCCTGCGCTGGGCCCCGC | + |
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Preference number: 6 (lower is better) Translates to: RPRVASAQRNRI*TQAARACAGPR Trigger: GCGGGGCCCAGCGCAGGCACGTGCGGCTTGGGTGCAAATCCTGTTTCTCTGGGCAGAGGCCACGCGGGGACG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452037.1 |
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| CDS CAA 72 bp | CCGTCCCCGCGTGGCCTCTGCCCAGAGAAACAGGATTaGCACCCAAGCCGCACGTGCCTGCGCTGGGCCCCG | + |
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Preference number: 6 (lower is better) Translates to: PSPRGLCPEKQD*HPSRTCLRWAP Trigger: CGGGGCCCAGCGCAGGCACGTGCGGCTTGGGTGCAAATCCTGTTTCTCTGGGCAGAGGCCACGCGGGGACGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452037.1 |
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| CDS CCA 72 bp | GTTCATGCCCTCTGGTGCTGGGCTTCCCAACAGCCCTaGGGCTCTGTCCCTGTGTTTGTTCTGAATGGTCAG | + |
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Preference number: 6 (lower is better) Translates to: VHALWCWASQQP*GSVPVFVLNGQ Trigger: CTGACCATTCAGAACAAACACAGGGACAGAGCCCCAGGGCTGTTGGGAAGCCCAGCACCAGAGGGCATGAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438148.1 |
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| CDS GCA 72 bp | AGTTTTACTTCTCCTAAGAAGGTTCATGCCCTCTGGTaGTGGGCTTCCCAACAGCCCTGGGGCTCTGTCCCT | + |
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Preference number: 6 (lower is better) Translates to: SFTSPKKVHALW*WASQQPWGSVP Trigger: AGGGACAGAGCCCCAGGGCTGTTGGGAAGCCCAGCACCAGAGGGCATGAACCTTCTTAGGAGAAGTAAAACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000438148.1 |
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| CDS TCA 72 bp | CACTTGGCACTGATGGGGTGCTTTCTACACTGCAGATaGATACCATTGCCTGCAGGTCTCTTGGGTGATGTC | + |
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Preference number: 6 (lower is better) Translates to: HLALMGCFLHCR*IPLPAGLLGDV Trigger: GACATCACCCAAGAGACCTGCAGGCAATGGTATTCATCTGCAGTGTAGAAAGCACCCCATCAGTGCCAAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436841.1 |
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| CDS CCA 72 bp | ATAAATGTCCCACAGCGGATGTACTTATTCCTGACTTaGCGCACTCTGTCGCTTTTCCAAAGTAGTACCCAG | + |
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Preference number: 6 (lower is better) Translates to: INVPQRMYLFLT*RTLSLFQSSTQ Trigger: CTGGGTACTACTTTGGAAAAGCGACAGAGTGCGCCAAGTCAGGAATAAGTACATCCGCTGTGGGACATTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000436841.1 ENST00000452037.1 |
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| CDS TCA 72 bp | ACTGGAAAAACTGGAAGCAACCCAGCCATCTCAGTGTaGTTTAGAGGAATGAAATGCCATTGTGCCCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: TGKTGSNPAISV*FRGMKCHCAPF Trigger: AAAGGGGGCACAATGGCATTTCATTCCTCTAAATCACACTGAGATGGCTGGGTTGCTTCCAGTTTTTCCAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000436841.1 ENST00000452037.1 |
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