Pregenerated sensors for LINC01917 (Homo sapiens)
Ensembl gene IDs: ENSG00000260433Ensembl transcript IDs: ENST00000565170.1, ENST00000582064.1, ENST00000650275.1, ENST00000652786.1, ENST00000655115.1, ENST00000662607.1, ENST00000667801.1, ENST00000671412.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTGTCTGTCGAGTATCCCTCTACGGTAAGGCAGGAAGCCAGGGGCTaGCATCTGACATCTGTTGCTTTCACCATCACTGATGGCCAAGGC | + |
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Preference number: 5 (lower is better) Translates to: LSVEYPSTVRQEARG*HLTSVAFTITDGQG Trigger: GCCTTGGCCATCAGTGATGGTGAAAGCAACAGATGTCAGATGTCAGCCCCTGGCTTCCTGCCTTACCGTAGAGGGATACTCGACAGACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000650275.1 ENST00000671412.1 |
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| CDS TCA 90 bp | CTGTCTGTCGAGTATCCCTCTACGGTAAGGCAGGAAGCCAGGGGCTaGCATCTGACATCTGTTGCTTTCACCATCACTGATGGCCAAGGA | + |
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Preference number: 5 (lower is better) Translates to: LSVEYPSTVRQEARG*HLTSVAFTITDGQG Trigger: TCCTTGGCCATCAGTGATGGTGAAAGCAACAGATGTCAGATGTCAGCCCCTGGCTTCCTGCCTTACCGTAGAGGGATACTCGACAGACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000582064.1 |
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| CDS TCA 90 bp | ACCTGGATTCCCCAAGACATGACACCTGGCTTTCCCCAGCATGAGTaGTCTGTCCAGTCTGTCTGTCGAGTATCCCTCTACGGTAAGGCA | + |
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Preference number: 5 (lower is better) Translates to: TWIPQDMTPGFPQHE*SVQSVCRVSLYGKA Trigger: TGCCTTACCGTAGAGGGATACTCGACAGACAGACTGGACAGATCACTCATGCTGGGGAAAGCCAGGTGTCATGTCTTGGGGAATCCAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000582064.1 ENST00000650275.1 ENST00000671412.1 |
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| CDS TCA 90 bp | CAGAGCTTCAAGTTGTTTCATGAGGTTTCTTTCAGTGTCTTGAGCTaGGGGTCTAGTTTCTCGCTACATGGGCGTATGCACAGGTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: QSFKLFHEVSFSVLS*GSSFSLHGRMHRSA Trigger: GGCAGACCTGTGCATACGCCCATGTAGCGAGAAACTAGACCCTCAGCTCAAGACACTGAAAGAAACCTCATGAAACAACTTGAAGCTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000582064.1 ENST00000650275.1 ENST00000671412.1 |
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| CDS TCA 90 bp | AGGGTCAGAGCTTCAAGTTGTTTCATGAGGTTTCTTTCAGTGTCTTaGGCTGAGGGTCTAGTTTCTCGCTACATGGGCGTATGCACAGGT | + |
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Preference number: 5 (lower is better) Translates to: RVRASSCFMRFLSVS*AEGLVSRYMGVCTG Trigger: ACCTGTGCATACGCCCATGTAGCGAGAAACTAGACCCTCAGCTCAAGACACTGAAAGAAACCTCATGAAACAACTTGAAGCTCTGACCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000582064.1 ENST00000650275.1 ENST00000671412.1 |
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| CDS GCA 90 bp | GTATATCAGATCTCCAGAGTAGGTCTGCAGTGGGAGCCAAAATTTTaGATTTCTAACTTGGTCCCAGGTGATACTTGTGCTGGCGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: VYQISRVGLQWEPKF*ISNLVPGDTCAGAA Trigger: AGCAGCGCCAGCACAAGTATCACCTGGGACCAAGTTAGAAATGCAAAATTTTGGCTCCCACTGCAGACCTACTCTGGAGATCTGATATAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000652786.1 |
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| CDS CCA 90 bp | GAAAGCCATAATACAGCCCTTCTTGGCTGCAGTCTGTACAAAGTTTaGTTCAGTGAGGGGTTTAATGGTGTAGGAGAAAAACTTCCAAGC | + |
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Preference number: 5 (lower is better) Translates to: ESHNTALLGCSLYKV*FSEGFNGVGEKLPS Trigger: GCTTGGAAGTTTTTCTCCTACACCATTAAACCCCTCACTGAACCAAACTTTGTACAGACTGCAGCCAAGAAGGGCTGTATTATGGCTTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000565170.1 ENST00000655115.1 ENST00000662607.1 ENST00000667801.1 |
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| CDS CCA 90 bp | GCCATGGTTCTCAAAGTATATCAGATCTCCAGAGTAGGTCTGCAGTaGGAGCCAAAATTTTGCATTTCTAACTTGGTCCCAGGTGATACT | + |
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Preference number: 5 (lower is better) Translates to: AMVLKVYQISRVGLQ*EPKFCISNLVPGDT Trigger: AGTATCACCTGGGACCAAGTTAGAAATGCAAAATTTTGGCTCCCACTGCAGACCTACTCTGGAGATCTGATATACTTTGAGAACCATGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000652786.1 |
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| CDS CCA 90 bp | TCAATAGTATCTGAGAATCAGGTATCTAAGAGCAGTTTAGCTAGGTaGTTCAGGGTCAGAGCTTCAAGTTGTTTCATGAGGTTTCTTTCA | + |
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Preference number: 5 (lower is better) Translates to: SIVSENQVSKSSLAR*FRVRASSCFMRFLS Trigger: TGAAAGAAACCTCATGAAACAACTTGAAGCTCTGACCCTGAACCACCTAGCTAAACTGCTCTTAGATACCTGATTCTCAGATACTATTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000582064.1 ENST00000650275.1 ENST00000671412.1 |
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| CDS TCA 72 bp | CCCCAAGACATGACACCTGGCTTTCCCCAGCATGAGTaGTCTGTCCAGTCTGTCTGTCGAGTATCCCTCTAC | + |
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Preference number: 6 (lower is better) Translates to: PQDMTPGFPQHE*SVQSVCRVSLY Trigger: GTAGAGGGATACTCGACAGACAGACTGGACAGATCACTCATGCTGGGGAAAGCCAGGTGTCATGTCTTGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000582064.1 ENST00000650275.1 ENST00000671412.1 |
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| CDS TCA 72 bp | GATTCCCCAAGACATGACACCTGGCTTTCCCCAGCATaGGTGATCTGTCCAGTCTGTCTGTCGAGTATCCCT | + |
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Preference number: 6 (lower is better) Translates to: DSPRHDTWLSPA*VICPVCLSSIP Trigger: AGGGATACTCGACAGACAGACTGGACAGATCACTCATGCTGGGGAAAGCCAGGTGTCATGTCTTGGGGAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000582064.1 ENST00000650275.1 ENST00000671412.1 |
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| CDS TCA 72 bp | GAGTATCCCTCTACGGTAAGGCAGGAAGCCAGGGGCTaGCATCTGACATCTGTTGCTTTCACCATCACTGAT | + |
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Preference number: 6 (lower is better) Translates to: EYPSTVRQEARG*HLTSVAFTITD Trigger: ATCAGTGATGGTGAAAGCAACAGATGTCAGATGTCAGCCCCTGGCTTCCTGCCTTACCGTAGAGGGATACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000582064.1 ENST00000650275.1 ENST00000671412.1 |
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| CDS GCA 72 bp | CTTCCTTCAAAAACCTTGGCCTGCGATGGCCTGGATTaGAGGAGTCCTATGATGTTGGCTAGTCGGTGTAAT | + |
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Preference number: 6 (lower is better) Translates to: LPSKTLACDGLD*RSPMMLASRCN Trigger: ATTACACCGACTAGCCAACATCATAGGACTCCTGCAATCCAGGCCATCGCAGGCCAAGGTTTTTGAAGGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000582064.1 |
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| CDS CCA 72 bp | GTCTGCAGTGGGAGCCAAAATTTTGCATTTCTAACTTaGTCCCAGGTGATACTTGTGCTGGCGCTGCTAGTC | + |
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Preference number: 6 (lower is better) Translates to: VCSGSQNFAFLT*SQVILVLALLV Trigger: GACTAGCAGCGCCAGCACAAGTATCACCTGGGACCAAGTTAGAAATGCAAAATTTTGGCTCCCACTGCAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000652786.1 |
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| CDS CAA 72 bp | GGTCTGCAGTGGGAGCCAAAATTTTGCATTTCTAACTaGGTCCCAGGTGATACTTGTGCTGGCGCTGCTAGT | + |
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Preference number: 6 (lower is better) Translates to: GLQWEPKFCISN*VPGDTCAGAAS Trigger: ACTAGCAGCGCCAGCACAAGTATCACCTGGGACCAAGTTAGAAATGCAAAATTTTGGCTCCCACTGCAGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000652786.1 |
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| CDS CAA 90 bp | TCCAGAGTAGGTCTGCAGTGGGAGCCAAAATTTTGCATTTCTAACTaGGTCCCAGGTGATACTTGTGCTGGCGCTGCTAGTCTACACTTA | + |
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Preference number: 6 (lower is better) Translates to: SRVGLQWEPKFCISN*VPGDTCAGAASLHL Trigger: TAAGTGTAGACTAGCAGCGCCAGCACAAGTATCACCTGGGACCAAGTTAGAAATGCAAAATTTTGGCTCCCACTGCAGACCTACTCTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000652786.1 |
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| CDS CAA 90 bp | ACTCATTTCTCCCTCAGAGGGACCACTTTGGAAATGAATTGTCCATaGCTGAGTATGAAGAGATGTCCAGTCCAGGCAAAGCCTTCACTG | + |
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Preference number: 6 (lower is better) Translates to: THFSLRGTTLEMNCP*LSMKRCPVQAKPSL Trigger: CAGTGAAGGCTTTGCCTGGACTGGACATCTCTTCATACTCAGCAATGGACAATTCATTTCCAAAGTGGTCCCTCTGAGGGAGAAATGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650275.1 |
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| CDS CAA 72 bp | TCCCTCAGAGGGACCACTTTGGAAATGAATTGTCCATaGCTGAGTATGAAGAGATGTCCAGTCCAGGCAAAG | + |
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Preference number: 6 (lower is better) Translates to: SLRGTTLEMNCP*LSMKRCPVQAK Trigger: CTTTGCCTGGACTGGACATCTCTTCATACTCAGCAATGGACAATTCATTTCCAAAGTGGTCCCTCTGAGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650275.1 |
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| CDS TCA 72 bp | GGGCTGACATCTGACATCTGTTGCTTTCACCATCACTaGTGGCCAAGGATGAATCCAGATAATAAAAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: GLTSDICCFHHH*WPRMNPDNKRV Trigger: GACCCTTTTATTATCTGGATTCATCCTTGGCCATCAGTGATGGTGAAAGCAACAGATGTCAGATGTCAGCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000582064.1 |
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| CDS TCA 72 bp | AAGTTGTTTCATGAGGTTTCTTTCAGTGTCTTGAGCTaGGGGTCTAGTTTCTCGCTACATGGGCGTATGCAC | + |
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Preference number: 6 (lower is better) Translates to: KLFHEVSFSVLS*GSSFSLHGRMH Trigger: GTGCATACGCCCATGTAGCGAGAAACTAGACCCTCAGCTCAAGACACTGAAAGAAACCTCATGAAACAACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000582064.1 ENST00000650275.1 ENST00000671412.1 |
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| CDS GCA 72 bp | ATCTCCAGAGTAGGTCTGCAGTGGGAGCCAAAATTTTaGATTTCTAACTTGGTCCCAGGTGATACTTGTGCT | + |
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Preference number: 6 (lower is better) Translates to: ISRVGLQWEPKF*ISNLVPGDTCA Trigger: AGCACAAGTATCACCTGGGACCAAGTTAGAAATGCAAAATTTTGGCTCCCACTGCAGACCTACTCTGGAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000652786.1 |
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| CDS CAA 72 bp | TCATTTCTCCCTCAGAGGGACCACTTTGGAAATGAATaGTCCATTGCTGAGTATGAAGAGATGTCCAGTCCA | + |
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Preference number: 6 (lower is better) Translates to: SFLPQRDHFGNE*SIAEYEEMSSP Trigger: TGGACTGGACATCTCTTCATACTCAGCAATGGACAATTCATTTCCAAAGTGGTCCCTCTGAGGGAGAAATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650275.1 |
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| CDS CCA 72 bp | CTCAAAGTATATCAGATCTCCAGAGTAGGTCTGCAGTaGGAGCCAAAATTTTGCATTTCTAACTTGGTCCCA | + |
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Preference number: 6 (lower is better) Translates to: LKVYQISRVGLQ*EPKFCISNLVP Trigger: TGGGACCAAGTTAGAAATGCAAAATTTTGGCTCCCACTGCAGACCTACTCTGGAGATCTGATATACTTTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000652786.1 |
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