Pregenerated sensors for LINC01909 (Homo sapiens)
Ensembl gene IDs: ENSG00000266258Ensembl transcript IDs: ENST00000583247.1, ENST00000584919.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTaGTTTCTGCATTTCCAACTGAGATACCAGGTTCATCTCACTGGG | + |
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Preference number: 5 (lower is better) Translates to: QLQSTAPSVSDAEDG*FLHFQLRYQVHLTG Trigger: CCCAGTGAGATGAACCTGGTATCTCAGTTGGAAATGCAGAAATCACCCGTCTTCTGCGTCGCTCACGCTGGGAGCTGTAGACTGGAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583247.1 |
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| CDS TCA 90 bp | ACACTGGAAGTCCAAGATCAAGGTGCCAGCAGGGTCAGTGTCTGGTaGAGTCTCTCTCCTTGGGTTGCAGATGACTGTCTTCTCGCCATG | + |
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Preference number: 5 (lower is better) Translates to: TLEVQDQGASRVSVW*SLSPWVADDCLLAM Trigger: CATGGCGAGAAGACAGTCATCTGCAACCCAAGGAGAGAGACTTCACCAGACACTGACCCTGCTGGCACCTTGATCTTGGACTTCCAGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000583247.1 ENST00000584919.1 |
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| CDS TCA 90 bp | CAGCAGGGTCAGTGTCTGGTGAAGTCTCTCTCCTTGGGTTGCAGATaGCTGTCTTCTCGCCATGTTTTCACATGGCCTTTCCTTCCCAAA | + |
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Preference number: 5 (lower is better) Translates to: QQGQCLVKSLSLGCR*LSSRHVFTWPFLPK Trigger: TTTGGGAAGGAAAGGCCATGTGAAAACATGGCGAGAAGACAGTCATCTGCAACCCAAGGAGAGAGACTTCACCAGACACTGACCCTGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000583247.1 |
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| CDS TCA 90 bp | CAAGAGAAAACTCTTCTCCCAGGCCTGTCTCCTTTCATCCAGGAATaGAAATCTCTCTCAGTCTTACATCTATTGAATCTCATGGGCTTT | + |
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Preference number: 5 (lower is better) Translates to: QEKTLLPGLSPFIQE*KSLSVLHLLNLMGF Trigger: AAAGCCCATGAGATTCAATAGATGTAAGACTGAGAGAGATTTTCATTCCTGGATGAAAGGAGACAGGCCTGGGAGAAGAGTTTTCTCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000584919.1 |
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| CDS TCA 90 bp | CCATCTAGGATGGAAGAATGGGATTCTGAACTTTGTCACTGTTTCTaGAACGTCATCAGCTCCTCAGAGAGAAGTTTGATGAGATTTGAT | + |
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Preference number: 5 (lower is better) Translates to: PSRMEEWDSELCHCF*NVISSSERSLMRFD Trigger: ATCAAATCTCATCAAACTTCTCTCTGAGGAGCTGATGACGTTTCAGAAACAGTGACAAAGTTCAGAATCCCATTCTTCCATCCTAGATGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584919.1 |
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| CDS TCA 72 bp | CCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTaGGCGACGCAGAAGACGGGTGATTTCTGCATTTCC | + |
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Preference number: 6 (lower is better) Translates to: PNRNSSSLQLPA*ATQKTGDFCIS Trigger: GGAAATGCAGAAATCACCCGTCTTCTGCGTCGCTCACGCTGGGAGCTGTAGACTGGAGCTGTTCCTATTCGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583247.1 |
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| CDS TCA 72 bp | GCGACGCAGAAGACGGGTGATTTCTGCATTTCCAACTaGGATACCAGGTTCATCTCACTGGGGCCATCTCCA | + |
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Preference number: 6 (lower is better) Translates to: ATQKTGDFCISN*DTRFISLGPSP Trigger: TGGAGATGGCCCCAGTGAGATGAACCTGGTATCTCAGTTGGAAATGCAGAAATCACCCGTCTTCTGCGTCGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000583247.1 |
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| CDS TCA 72 bp | GTCCAAGATCAAGGTGCCAGCAGGGTCAGTGTCTGGTaGAGTCTCTCTCCTTGGGTTGCAGATGACTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: VQDQGASRVSVW*SLSPWVADDCL Trigger: AAGACAGTCATCTGCAACCCAAGGAGAGAGACTTCACCAGACACTGACCCTGCTGGCACCTTGATCTTGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000583247.1 ENST00000584919.1 |
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| CDS CAA 90 bp | AAGGTGCCAGCAGGGTCAGTGTCTGGTGAAGTCTCTCTCCTTGGGTaGCAGATGACTGTCTTCTCGCCATGTTTTCACATGGCCTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: KVPAGSVSGEVSLLG*QMTVFSPCFHMAFP Trigger: AGGAAAGGCCATGTGAAAACATGGCGAGAAGACAGTCATCTGCAACCCAAGGAGAGAGACTTCACCAGACACTGACCCTGCTGGCACCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000583247.1 ENST00000584919.1 |
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| CDS TCA 72 bp | TCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTaGTTTCTGCATTTCCAACTGAGATACCAGGTTCAT | + |
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Preference number: 6 (lower is better) Translates to: STAPSVSDAEDG*FLHFQLRYQVH Trigger: ATGAACCTGGTATCTCAGTTGGAAATGCAGAAATCACCCGTCTTCTGCGTCGCTCACGCTGGGAGCTGTAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583247.1 |
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| CDS CAA 72 bp | GCAGGGTCAGTGTCTGGTGAAGTCTCTCTCCTTGGGTaGCAGATGACTGTCTTCTCGCCATGTTTTCACATG | + |
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Preference number: 6 (lower is better) Translates to: AGSVSGEVSLLG*QMTVFSPCFHM Trigger: CATGTGAAAACATGGCGAGAAGACAGTCATCTGCAACCCAAGGAGAGAGACTTCACCAGACACTGACCCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000583247.1 ENST00000584919.1 |
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| CDS TCA 72 bp | CAGTGTCTGGTGAAGTCTCTCTCCTTGGGTTGCAGATaGCTGTCTTCTCGCCATGTTTTCACATGGCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: QCLVKSLSLGCR*LSSRHVFTWPF Trigger: GAAAGGCCATGTGAAAACATGGCGAGAAGACAGTCATCTGCAACCCAAGGAGAGAGACTTCACCAGACACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000583247.1 ENST00000584919.1 |
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| CDS CAA 90 bp | CTTGCTTTCTATAGTGAGGCTGACTCTGAGGCCCAAGATCTGATCTaGAAAGGAAAATCCATCTTCAACAGCTCAGGCTGTTACAACAAA | + |
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Preference number: 6 (lower is better) Translates to: LAFYSEADSEAQDLI*KGKSIFNSSGCYNK Trigger: TTTGTTGTAACAGCCTGAGCTGTTGAAGATGGATTTTCCTTTCAAGATCAGATCTTGGGCCTCAGAGTCAGCCTCACTATAGAAAGCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000584919.1 |
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| CDS TCA 72 bp | ACTCTTCTCCCAGGCCTGTCTCCTTTCATCCAGGAATaGAAATCTCTCTCAGTCTTACATCTATTGAATCTC | + |
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Preference number: 6 (lower is better) Translates to: TLLPGLSPFIQE*KSLSVLHLLNL Trigger: GAGATTCAATAGATGTAAGACTGAGAGAGATTTTCATTCCTGGATGAAAGGAGACAGGCCTGGGAGAAGAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584919.1 |
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