Pregenerated sensors for LINC01908 (Homo sapiens)
Ensembl gene IDs: ENSG00000265374Ensembl transcript IDs: ENST00000583148.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGCCTGAGAAGGGAGGAGTTATTCATCTCCTTAAGCTTTCAGGCCTaGGGAAGAACCTTAAAAGATGTACCTGTGAAGCTCTTGCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: GLRREELFISLSFQA*GRTLKDVPVKLLLP Trigger: AGGAAGCAAGAGCTTCACAGGTACATCTTTTAAGGTTCTTCCCCAGGCCTGAAAGCTTAAGGAGATGAATAACTCCTCCCTTCTCAGGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000583148.1 |
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| CDS GCA 90 bp | ACATTCATAATTCCGACAAGATGTCTCTGTCTTTCAGAACATCCCTaGAGGAGGTTGTCAACTTTTAAAAATGGTGCCCTTGTACAACTT | + |
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Preference number: 5 (lower is better) Translates to: TFIIPTRCLCLSEHP*RRLSTFKNGALVQL Trigger: AAGTTGTACAAGGGCACCATTTTTAAAAGTTGACAACCTCCTGCAGGGATGTTCTGAAAGACAGAGACATCTTGTCGGAATTATGAATGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000583148.1 |
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| CDS GCA 72 bp | GTCTTCCGGCTGGCTCTCTTCCTGCTTCTGCTATCTTaGTGGCGCACGCTGCTGCTGCAAGTAGCTTTGCAC | + |
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Preference number: 6 (lower is better) Translates to: VFRLALFLLLLS*WRTLLLQVALH Trigger: GTGCAAAGCTACTTGCAGCAGCAGCGTGCGCCAGCAAGATAGCAGAAGCAGGAAGAGAGCCAGCCGGAAGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583148.1 |
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| CDS GCA 72 bp | CTTCAGAGGTACATGTCTTCCGGCTGGCTCTCTTCCTaGTTCTGCTATCTTGCTGGCGCACGCTGCTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: LQRYMSSGWLSS*FCYLAGARCCC Trigger: GCAGCAGCAGCGTGCGCCAGCAAGATAGCAGAAGCAGGAAGAGAGCCAGCCGGAAGACATGTACCTCTGAAG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583148.1 |
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| CDS CCA 72 bp | TTCCGGCTGGCTCTCTTCCTGCTTCTGCTATCTTGCTaGCGCACGCTGCTGCTGCAAGTAGCTTTGCACCTT | + |
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Preference number: 6 (lower is better) Translates to: FRLALFLLLLSC*RTLLLQVALHL Trigger: AAGGTGCAAAGCTACTTGCAGCAGCAGCGTGCGCCAGCAAGATAGCAGAAGCAGGAAGAGAGCCAGCCGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583148.1 |
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| CDS CAA 90 bp | GCCTCAATGTGCCCTGATGCTGTTCTCTTCTGGATAGCCTCTTTCTaGATCTTCAGAGGTACATGTCTTCCGGCTGGCTCTCTTCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: ASMCPDAVLFWIASF*IFRGTCLPAGSLPA Trigger: AGCAGGAAGAGAGCCAGCCGGAAGACATGTACCTCTGAAGATCAAGAAAGAGGCTATCCAGAAGAGAACAGCATCAGGGCACATTGAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583148.1 |
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| CDS CCA 72 bp | CTCTTTCTTGATCTTCAGAGGTACATGTCTTCCGGCTaGCTCTCTTCCTGCTTCTGCTATCTTGCTGGCGCA | + |
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Preference number: 6 (lower is better) Translates to: LFLDLQRYMSSG*LSSCFCYLAGA Trigger: TGCGCCAGCAAGATAGCAGAAGCAGGAAGAGAGCCAGCCGGAAGACATGTACCTCTGAAGATCAAGAAAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583148.1 |
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| CDS CAA 72 bp | TGCCCTGATGCTGTTCTCTTCTGGATAGCCTCTTTCTaGATCTTCAGAGGTACATGTCTTCCGGCTGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: CPDAVLFWIASF*IFRGTCLPAGS Trigger: AGAGCCAGCCGGAAGACATGTACCTCTGAAGATCAAGAAAGAGGCTATCCAGAAGAGAACAGCATCAGGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583148.1 |
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| CDS CCA 72 bp | AGGGAGGAGTTATTCATCTCCTTAAGCTTTCAGGCCTaGGGAAGAACCTTAAAAGATGTACCTGTGAAGCTC | + |
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Preference number: 6 (lower is better) Translates to: REELFISLSFQA*GRTLKDVPVKL Trigger: GAGCTTCACAGGTACATCTTTTAAGGTTCTTCCCCAGGCCTGAAAGCTTAAGGAGATGAATAACTCCTCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000583148.1 |
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| CDS GCA 72 bp | ATTCCGACAAGATGTCTCTGTCTTTCAGAACATCCCTaGAGGAGGTTGTCAACTTTTAAAAATGGTGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: IPTRCLCLSEHP*RRLSTFKNGAL Trigger: AAGGGCACCATTTTTAAAAGTTGACAACCTCCTGCAGGGATGTTCTGAAAGACAGAGACATCTTGTCGGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000583148.1 |
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| CDS CAA 90 bp | ATTCCGACAAGATGTCTCTGTCTTTCAGAACATCCCTGCAGGAGGTaGTCAACTTTTAAAAATGGTGCCCTTGTACAACTTTGGACAATG | + |
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Preference number: 6 (lower is better) Translates to: IPTRCLCLSEHPCRR*STFKNGALVQLWTM Trigger: CATTGTCCAAAGTTGTACAAGGGCACCATTTTTAAAAGTTGACAACCTCCTGCAGGGATGTTCTGAAAGACAGAGACATCTTGTCGGAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000583148.1 |
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