Pregenerated sensors for LINC01903 (Homo sapiens)
Ensembl gene IDs: ENSG00000265555Ensembl transcript IDs: ENST00000580659.1
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CATTGGTTGTGCTACATGCGGTCACGTGTAGTTGTGGGGAATAATTaGGCTTTTTCTGTGGACCAGTGTCGGCTGCAGGCATTGCAGTTT | + |
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Preference number: 5 (lower is better) Translates to: HWLCYMRSRVVVGNN*AFSVDQCRLQALQF Trigger: AAACTGCAATGCCTGCAGCCGACACTGGTCCACAGAAAAAGCCCAATTATTCCCCACAACTACACGTGACCGCATGTAGCACAACCAATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS TCA 90 bp | CATGATCTGAGTTTGCAACTAAGGGCAAATTCAAGTGGCTGTTACTaGAGGCAACACGAGCCATGTGACAAAAGGAACTTTGGTGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: HDLSLQLRANSSGCY*RQHEPCDKRNFGAS Trigger: AGAGGCACCAAAGTTCCTTTTGTCACATGGCTCGTGTTGCCTTCAGTAACAGCCACTTGAATTTGCCCTTAGTTGCAAACTCAGATCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CCA 90 bp | CACCCAACAATGACGATGACCTTTTATTTGGTGCAAGTTTGGCTTTaGGAAGTGCTTTGGAGCTTCTTCTGGATCCAGTTATTCAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: HPTMTMTFYLVQVWL*EVLWSFFWIQLFSW Trigger: CCAGCTGAATAACTGGATCCAGAAGAAGCTCCAAAGCACTTCCCAAAGCCAAACTTGCACCAAATAAAAGGTCATCGTCATTGTTGGGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CCA 90 bp | GCAGAGCACCCAACAATGACGATGACCTTTTATTTGGTGCAAGTTTaGCTTTGGGAAGTGCTTTGGAGCTTCTTCTGGATCCAGTTATTC | + |
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Preference number: 5 (lower is better) Translates to: AEHPTMTMTFYLVQV*LWEVLWSFFWIQLF Trigger: GAATAACTGGATCCAGAAGAAGCTCCAAAGCACTTCCCAAAGCCAAACTTGCACCAAATAAAAGGTCATCGTCATTGTTGGGTGCTCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CCA 90 bp | ACGATGACCTTTTATTTGGTGCAAGTTTGGCTTTGGGAAGTGCTTTaGAGCTTCTTCTGGATCCAGTTATTCAGCTGGTCATCACTGGTT | + |
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Preference number: 5 (lower is better) Translates to: TMTFYLVQVWLWEVL*SFFWIQLFSWSSLV Trigger: AACCAGTGATGACCAGCTGAATAACTGGATCCAGAAGAAGCTCCAAAGCACTTCCCAAAGCCAAACTTGCACCAAATAAAAGGTCATCGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CCA 72 bp | TGCTACATGCGGTCACGTGTAGTTGTGGGGAATAATTaGGCTTTTTCTGTGGACCAGTGTCGGCTGCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: CYMRSRVVVGNN*AFSVDQCRLQA Trigger: TGCCTGCAGCCGACACTGGTCCACAGAAAAAGCCCAATTATTCCCCACAACTACACGTGACCGCATGTAGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CAA 72 bp | CCATTATGCTCCTCGTCTTCAAGGGTCTCATCTCTTTaGCAAAACTTCTCGAACCGCCCCCGCACTGTACCT | + |
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Preference number: 6 (lower is better) Translates to: PLCSSSSRVSSL*QNFSNRPRTVP Trigger: AGGTACAGTGCGGGGGCGGTTCGAGAAGTTTTGCAAAAGAGATGAGACCCTTGAAGACGAGGAGCATAATGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CAA 72 bp | TGGGCTTTTTCTGTGGACCAGTGTCGGCTGCAGGCATaGCAGTTTTCAGGACATCTCATCGATTTGCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: WAFSVDQCRLQA*QFSGHLIDLLS Trigger: GCTCAGCAAATCGATGAGATGTCCTGAAAACTGCAATGCCTGCAGCCGACACTGGTCCACAGAAAAAGCCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CAA 90 bp | GGGAATAATTGGGCTTTTTCTGTGGACCAGTGTCGGCTGCAGGCATaGCAGTTTTCAGGACATCTCATCGATTTGCTGAGCATACGTCTC | + |
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Preference number: 6 (lower is better) Translates to: GNNWAFSVDQCRLQA*QFSGHLIDLLSIRL Trigger: GAGACGTATGCTCAGCAAATCGATGAGATGTCCTGAAAACTGCAATGCCTGCAGCCGACACTGGTCCACAGAAAAAGCCCAATTATTCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS TCA 72 bp | GGAAGCTTTTTCCTTGCAAAAAGTTGGCGAGATGCTTaGAGAAGTGGCAGAGAGTTGGGAGGTCAGTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: GSFFLAKSWRDA*RSGRELGGQLV Trigger: CACCAACTGACCTCCCAACTCTCTGCCACTTCTTCAAGCATCTCGCCAACTTTTTGCAAGGAAAAAGCTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CCA 72 bp | TTTCCTTGCAAAAAGTTGGCGAGATGCTTGAAGAAGTaGCAGAGAGTTGGGAGGTCAGTTGGTGAGAGGTCA | + |
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Preference number: 6 (lower is better) Translates to: FPCKKLARCLKK*QRVGRSVGERS Trigger: TGACCTCTCACCAACTGACCTCCCAACTCTCTGCCACTTCTTCAAGCATCTCGCCAACTTTTTGCAAGGAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CAA 72 bp | GCAGCAGAGCACCCAACAATGACGATGACCTTTTATTaGGTGCAAGTTTGGCTTTGGGAAGTGCTTTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: AAEHPTMTMTFY*VQVWLWEVLWS Trigger: GCTCCAAAGCACTTCCCAAAGCCAAACTTGCACCAAATAAAAGGTCATCGTCATTGTTGGGTGCTCTGCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS GCA 72 bp | AGGCCGAATGACTGTGGAATGGTCAACAATGAGTTCTaGAACTTCTTGTGGTGTTGTGAGAGGATCAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: RPNDCGMVNNEF*NFLWCCERISF Trigger: GAAGCTGATCCTCTCACAACACCACAAGAAGTTGCAGAACTCATTGTTGACCATTCCACAGTCATTCGGCCT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CAA 72 bp | TGTGAGAGGATCAGCTTCAATGATTGCTCTCGGTTGTaGTCAACTTCCTGTGACCAACCATTATGCTCCTCG | + |
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Preference number: 6 (lower is better) Translates to: CERISFNDCSRL*STSCDQPLCSS Trigger: CGAGGAGCATAATGGTTGGTCACAGGAAGTTGACAACAACCGAGAGCAATCATTGAAGCTGATCCTCTCACA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS GCA 72 bp | TTCTTGTGGTGTTGTGAGAGGATCAGCTTCAATGATTaGTCTCGGTTGTTGTCAACTTCCTGTGACCAACCA | + |
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Preference number: 6 (lower is better) Translates to: FLWCCERISFND*SRLLSTSCDQP Trigger: TGGTTGGTCACAGGAAGTTGACAACAACCGAGAGCAATCATTGAAGCTGATCCTCTCACAACACCACAAGAA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS GCA 72 bp | TTGTGGAAGCTTTTTCCTTGCAAAAAGTTGGCGAGATaGTTGAAGAAGTGGCAGAGAGTTGGGAGGTCAGTT | + |
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Preference number: 6 (lower is better) Translates to: LWKLFPCKKLAR*LKKWQRVGRSV Trigger: AACTGACCTCCCAACTCTCTGCCACTTCTTCAAGCATCTCGCCAACTTTTTGCAAGGAAAAAGCTTCCACAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CAA 72 bp | TGTTGTGAGAGGATCAGCTTCAATGATTGCTCTCGGTaGTTGTCAACTTCCTGTGACCAACCATTATGCTCC | + |
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Preference number: 6 (lower is better) Translates to: CCERISFNDCSR*LSTSCDQPLCS Trigger: GGAGCATAATGGTTGGTCACAGGAAGTTGACAACAACCGAGAGCAATCATTGAAGCTGATCCTCTCACAACA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CAA 90 bp | CAGTGTCGGCTGCAGGCATTGCAGTTTTCAGGACATCTCATCGATTaGCTGAGCATACGTCTCAGATGTAATAGTTTCATTAGGATTCAG | + |
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Preference number: 6 (lower is better) Translates to: QCRLQALQFSGHLID*LSIRLRCNSFIRIQ Trigger: CTGAATCCTAATGAAACTATTACATCTGAGACGTATGCTCAGCAAATCGATGAGATGTCCTGAAAACTGCAATGCCTGCAGCCGACACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CAA 72 bp | GACTGTGGAATGGTCAACAATGAGTTCTGCAACTTCTaGTGGTGTTGTGAGAGGATCAGCTTCAATGATTGC | + |
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Preference number: 6 (lower is better) Translates to: DCGMVNNEFCNF*WCCERISFNDC Trigger: GCAATCATTGAAGCTGATCCTCTCACAACACCACAAGAAGTTGCAGAACTCATTGTTGACCATTCCACAGTC 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CAA 72 bp | CTTTTATTTGGTGCAAGTTTGGCTTTGGGAAGTGCTTaGGAGCTTCTTCTGGATCCAGTTATTCAGCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: LLFGASLALGSA*ELLLDPVIQLV Trigger: GACCAGCTGAATAACTGGATCCAGAAGAAGCTCCAAAGCACTTCCCAAAGCCAAACTTGCACCAAATAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS TCA 72 bp | AGTTTGCAACTAAGGGCAAATTCAAGTGGCTGTTACTaGAGGCAACACGAGCCATGTGACAAAAGGAACTTT | + |
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Preference number: 6 (lower is better) Translates to: SLQLRANSSGCY*RQHEPCDKRNF Trigger: AAAGTTCCTTTTGTCACATGGCTCGTGTTGCCTTCAGTAACAGCCACTTGAATTTGCCCTTAGTTGCAAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS GCA 72 bp | GCTTCAGGATTCGATGAACTCTTGGAAAGCATTTTCTaGCTCCTACTAGTTGTGGAAGCTTTTTCCTTGCAA | + |
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Preference number: 6 (lower is better) Translates to: ASGFDELLESIF*LLLVVEAFSLQ Trigger: TTGCAAGGAAAAAGCTTCCACAACTAGTAGGAGGCAGAAAATGCTTTCCAAGAGTTCATCGAATCCTGAAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CCA 72 bp | TGTGGAATGGTCAACAATGAGTTCTGCAACTTCTTGTaGTGTTGTGAGAGGATCAGCTTCAATGATTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: CGMVNNEFCNFL*CCERISFNDCS Trigger: AGAGCAATCATTGAAGCTGATCCTCTCACAACACCACAAGAAGTTGCAGAACTCATTGTTGACCATTCCACA 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CCA 72 bp | TTCCCAATTTGCTTCAAAGGCCGAATGACTGTGGAATaGTCAACAATGAGTTCTGCAACTTCTTGTGGTGTT | + |
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Preference number: 6 (lower is better) Translates to: FPICFKGRMTVE*STMSSATSCGV Trigger: AACACCACAAGAAGTTGCAGAACTCATTGTTGACCATTCCACAGTCATTCGGCCTTTGAAGCAAATTGGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CCA 72 bp | GCTTCTTCTGGATCCAGTTATTCAGCTGGTCATCACTaGTTGTCCTATAAAATCTACATTTCGTCGCACATC | + |
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Preference number: 6 (lower is better) Translates to: ASSGSSYSAGHH*LSYKIYISSHI Trigger: GATGTGCGACGAAATGTAGATTTTATAGGACAACCAGTGATGACCAGCTGAATAACTGGATCCAGAAGAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CCA 72 bp | TTTTATTTGGTGCAAGTTTGGCTTTGGGAAGTGCTTTaGAGCTTCTTCTGGATCCAGTTATTCAGCTGGTCA | + |
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Preference number: 6 (lower is better) Translates to: FYLVQVWLWEVL*SFFWIQLFSWS Trigger: TGACCAGCTGAATAACTGGATCCAGAAGAAGCTCCAAAGCACTTCCCAAAGCCAAACTTGCACCAAATAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CAA 72 bp | AATGACGATGACCTTTTATTTGGTGCAAGTTTGGCTTaGGGAAGTGCTTTGGAGCTTCTTCTGGATCCAGTT | + |
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Preference number: 6 (lower is better) Translates to: NDDDLLFGASLA*GSALELLLDPV Trigger: AACTGGATCCAGAAGAAGCTCCAAAGCACTTCCCAAAGCCAAACTTGCACCAAATAAAAGGTCATCGTCATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS TCA 72 bp | GTGTTGTTCATATTGCGAATTGTCTCCACTGCTTTATaGCCCATTTTGAACTCGAATGAGAAAATCGCTCAA | + |
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Preference number: 6 (lower is better) Translates to: VLFILRIVSTAL*PILNSNEKIAQ Trigger: TTGAGCGATTTTCTCATTCGAGTTCAAAATGGGTCATAAAGCAGTGGAGACAATTCGCAATATGAACAACAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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| CDS CAA 72 bp | TTGAACTCGAATGAGAAAATCGCTCAAGTTTGCTTTTaGTCTAACATCATTTCCATAGTCTGGAAGAATGTC | + |
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Preference number: 6 (lower is better) Translates to: LNSNEKIAQVCF*SNIISIVWKNV Trigger: GACATTCTTCCAGACTATGGAAATGATGTTAGACAAAAAGCAAACTTGAGCGATTTTCTCATTCGAGTTCAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000580659.1 |
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