Pregenerated sensors for LINC01900 (Homo sapiens)
Ensembl gene IDs: ENSG00000265758Ensembl transcript IDs: ENST00000584028.1, ENST00000584898.1, ENST00000585185.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCCCTGAAGAGGTGCATTTGGAAGACTGGGCCACACAGGACCATCTaGAGAACGTATCGCAGAGGAGCAGGATCAGCCCGGGAGATGGAA | + |
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Preference number: 5 (lower is better) Translates to: SLKRCIWKTGPHRTI*RTYRRGAGSAREME Trigger: TTCCATCTCCCGGGCTGATCCTGCTCCTCTGCGATACGTTCTGCAGATGGTCCTGTGTGGCCCAGTCTTCCAAATGCACCTCTTCAGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584898.1 |
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| CDS TCA 90 bp | TTCTCTGACTTACAGCCCGTTTCTCTAACTGAGGATGGGCATCCCTaGAGAGGTGCATTTGGAAGACTGGGCCACACAGGACCATCTGCA | + |
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Preference number: 5 (lower is better) Translates to: FSDLQPVSLTEDGHP*RGAFGRLGHTGPSA Trigger: TGCAGATGGTCCTGTGTGGCCCAGTCTTCCAAATGCACCTCTTCAGGGATGCCCATCCTCAGTTAGAGAAACGGGCTGTAAGTCAGAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584898.1 |
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| CDS CCA 90 bp | CAGATTCTTCCCCAATCCAGTCTTTCCTCCTCTTCAAATGACGGCTaGCTCATCTTTGAGGAAGAGATGCTACAGCACCTTGGGAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: QILPQSSLSSSSNDG*LIFEEEMLQHLGRP Trigger: TGGCCTCCCAAGGTGCTGTAGCATCTCTTCCTCAAAGATGAGCCAGCCGTCATTTGAAGAGGAGGAAAGACTGGATTGGGGAAGAATCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000584028.1 |
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| CDS CCA 90 bp | CAGATTCTTCCCCAATCCAGTCTTTCCTCCTCTTCAAATGACGGCTaGCTCATCTTTGAGGAAGAGATGCTACTGGGTGTGGTGGCACAT | + |
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Preference number: 5 (lower is better) Translates to: QILPQSSLSSSSNDG*LIFEEEMLLGVVAH Trigger: ATGTGCCACCACACCCAGTAGCATCTCTTCCTCAAAGATGAGCCAGCCGTCATTTGAAGAGGAGGAAAGACTGGATTGGGGAAGAATCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000585185.1 |
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| CDS CCA 90 bp | CAGATTCTTCCCCAATCCAGTCTTTCCTCCTCTTCAAATGACGGCTaGCTCATCTTTGAGGAAGAGATGCTACTTTTACTGGATTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: QILPQSSLSSSSNDG*LIFEEEMLLLLDSW Trigger: CCAGGAATCCAGTAAAAGTAGCATCTCTTCCTCAAAGATGAGCCAGCCGTCATTTGAAGAGGAGGAAAGACTGGATTGGGGAAGAATCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000584898.1 |
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| CDS GCA 72 bp | AGGTGCATTTGGAAGACTGGGCCACACAGGACCATCTaGAGAACGTATCGCAGAGGAGCAGGATCAGCCCGG | + |
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Preference number: 6 (lower is better) Translates to: RCIWKTGPHRTI*RTYRRGAGSAR Trigger: CCGGGCTGATCCTGCTCCTCTGCGATACGTTCTGCAGATGGTCCTGTGTGGCCCAGTCTTCCAAATGCACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584898.1 |
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| CDS CCA 72 bp | AGGATGGGCATCCCTGAAGAGGTGCATTTGGAAGACTaGGCCACACAGGACCATCTGCAGAACGTATCGCAG | + |
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Preference number: 6 (lower is better) Translates to: RMGIPEEVHLED*ATQDHLQNVSQ Trigger: CTGCGATACGTTCTGCAGATGGTCCTGTGTGGCCCAGTCTTCCAAATGCACCTCTTCAGGGATGCCCATCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584898.1 |
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| CDS CAA 90 bp | CCCAATCCAGTCTTTCCTCCTCTTCAAATGACGGCTGGCTCATCTTaGAGGAAGAGATGCTACAGCACCTTGGGAGGCCAGTGTGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: PNPVFPPLQMTAGSS*RKRCYSTLGGQCGQ Trigger: CTGCCCACACTGGCCTCCCAAGGTGCTGTAGCATCTCTTCCTCAAAGATGAGCCAGCCGTCATTTGAAGAGGAGGAAAGACTGGATTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584028.1 |
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| CDS TCA 72 bp | TACAGCACCTTGGGAGGCCAGTGTGGGCAGATGGTTTaGGCCCAAGAATTCGAGACCAGCTTGGACAACATG | + |
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Preference number: 6 (lower is better) Translates to: YSTLGGQCGQMV*AQEFETSLDNM Trigger: CATGTTGTCCAAGCTGGTCTCGAATTCTTGGGCTCAAACCATCTGCCCACACTGGCCTCCCAAGGTGCTGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584028.1 |
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| CDS CAA 72 bp | CTACAGCACCTTGGGAGGCCAGTGTGGGCAGATGGTTaGAGCCCAAGAATTCGAGACCAGCTTGGACAACAT | + |
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Preference number: 6 (lower is better) Translates to: LQHLGRPVWADG*SPRIRDQLGQH Trigger: ATGTTGTCCAAGCTGGTCTCGAATTCTTGGGCTCAAACCATCTGCCCACACTGGCCTCCCAAGGTGCTGTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584028.1 |
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| CDS TCA 72 bp | TTACAGCCCGTTTCTCTAACTGAGGATGGGCATCCCTaGAGAGGTGCATTTGGAAGACTGGGCCACACAGGA | + |
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Preference number: 6 (lower is better) Translates to: LQPVSLTEDGHP*RGAFGRLGHTG Trigger: TCCTGTGTGGCCCAGTCTTCCAAATGCACCTCTTCAGGGATGCCCATCCTCAGTTAGAGAAACGGGCTGTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584898.1 |
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| CDS CAA 72 bp | GTCTTTCCTCCTCTTCAAATGACGGCTGGCTCATCTTaGAGGAAGAGATGCTACAGCACCTTGGGAGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: VFPPLQMTAGSS*RKRCYSTLGGQ Trigger: CTGGCCTCCCAAGGTGCTGTAGCATCTCTTCCTCAAAGATGAGCCAGCCGTCATTTGAAGAGGAGGAAAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584028.1 |
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| CDS CCA 72 bp | CCCCAATCCAGTCTTTCCTCCTCTTCAAATGACGGCTaGCTCATCTTTGAGGAAGAGATGCTACTGGGTGTG | + |
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Preference number: 6 (lower is better) Translates to: PQSSLSSSSNDG*LIFEEEMLLGV Trigger: CACACCCAGTAGCATCTCTTCCTCAAAGATGAGCCAGCCGTCATTTGAAGAGGAGGAAAGACTGGATTGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000585185.1 |
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| CDS CAA 72 bp | GTCTTTCCTCCTCTTCAAATGACGGCTGGCTCATCTTaGAGGAAGAGATGCTACTGGGTGTGGTGGCACATG | + |
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Preference number: 6 (lower is better) Translates to: VFPPLQMTAGSS*RKRCYWVWWHM Trigger: CATGTGCCACCACACCCAGTAGCATCTCTTCCTCAAAGATGAGCCAGCCGTCATTTGAAGAGGAGGAAAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000585185.1 |
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| CDS CCA 72 bp | CCCCAATCCAGTCTTTCCTCCTCTTCAAATGACGGCTaGCTCATCTTTGAGGAAGAGATGCTACAGCACCTT | + |
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Preference number: 6 (lower is better) Translates to: PQSSLSSSSNDG*LIFEEEMLQHL Trigger: AAGGTGCTGTAGCATCTCTTCCTCAAAGATGAGCCAGCCGTCATTTGAAGAGGAGGAAAGACTGGATTGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000584028.1 |
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| CDS CAA 90 bp | CCAGCACAACCTCCTTACCAGCTGCTTGTCAGGCATTTGGTTGTTTaGCTCTTTGCCAGCTTACCAATGACTAGAAAGCCTCTTTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: PAQPPYQLLVRHLVV*LFASLPMTRKPLSL Trigger: CAAAGAAAGAGGCTTTCTAGTCATTGGTAAGCTGGCAAAGAGCAAAACAACCAAATGCCTGACAAGCAGCTGGTAAGGAGGTTGTGCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584898.1 |
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| CDS CCA 72 bp | CCCCAATCCAGTCTTTCCTCCTCTTCAAATGACGGCTaGCTCATCTTTGAGGAAGAGATGCTACTTTTACTG | + |
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Preference number: 6 (lower is better) Translates to: PQSSLSSSSNDG*LIFEEEMLLLL Trigger: CAGTAAAAGTAGCATCTCTTCCTCAAAGATGAGCCAGCCGTCATTTGAAGAGGAGGAAAGACTGGATTGGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000584898.1 |
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| CDS CAA 72 bp | CCTCCTTACCAGCTGCTTGTCAGGCATTTGGTTGTTTaGCTCTTTGCCAGCTTACCAATGACTAGAAAGCCT | + |
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Preference number: 6 (lower is better) Translates to: PPYQLLVRHLVV*LFASLPMTRKP Trigger: AGGCTTTCTAGTCATTGGTAAGCTGGCAAAGAGCAAAACAACCAAATGCCTGACAAGCAGCTGGTAAGGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584898.1 |
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