Pregenerated sensors for LINC01898 (Homo sapiens)
Ensembl gene IDs: ENSG00000261194Ensembl transcript IDs: ENST00000564156.1, ENST00000662237.1, ENST00000662762.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AAATATGATACTATAGATGAGAGGCTGCTACCAGAGCTTCCCTTTTaGAAATTCCCGCACCTAGGGCCACATCACCACACCCCCTGGTAC | + |
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Preference number: 5 (lower is better) Translates to: KYDTIDERLLPELPF*KFPHLGPHHHTPWY Trigger: GTACCAGGGGGTGTGGTGATGTGGCCCTAGGTGCGGGAATTTCCAAAAGGGAAGCTCTGGTAGCAGCCTCTCATCTATAGTATCATATTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000564156.1 ENST00000662762.1 |
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| CDS CCA 90 bp | AAGCGGTCTGACTCTGCGGTCTTAACCAGTCTTAACCCACCTCTCTaGGTGATAGTCCAGAAATGCCACCAAGATCACATGTACAGCCAA | + |
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Preference number: 5 (lower is better) Translates to: KRSDSAVLTSLNPPL*VIVQKCHQDHMYSQ Trigger: TTGGCTGTACATGTGATCTTGGTGGCATTTCTGGACTATCACCCAGAGAGGTGGGTTAAGACTGGTTAAGACCGCAGAGTCAGACCGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000564156.1 ENST00000662237.1 ENST00000662762.1 |
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| CDS GCA 90 bp | GTCTTAACCAGTCTTAACCCACCTCTCTGGGTGATAGTCCAGAAATaGCACCAAGATCACATGTACAGCCAAGGCAGACATAATGATCAG | + |
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Preference number: 5 (lower is better) Translates to: VLTSLNPPLWVIVQK*HQDHMYSQGRHNDQ Trigger: CTGATCATTATGTCTGCCTTGGCTGTACATGTGATCTTGGTGGCATTTCTGGACTATCACCCAGAGAGGTGGGTTAAGACTGGTTAAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000564156.1 ENST00000662237.1 ENST00000662762.1 |
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| CDS CCA 90 bp | ATACATCTTTCCTGTTTTCTGTCATCATGGAGTAAATATAATTGCTaGTCTAAACAGGTTACACCTGTGGCAGCCACCTCAGGTGTAGGC | + |
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Preference number: 5 (lower is better) Translates to: IHLSCFLSSWSKYNC*SKQVTPVAATSGVG Trigger: GCCTACACCTGAGGTGGCTGCCACAGGTGTAACCTGTTTAGACCAGCAATTATATTTACTCCATGATGACAGAAAACAGGAAAGATGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000564156.1 ENST00000662762.1 |
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| CDS CCA 72 bp | TGGTACCCCTCCCTTCTGATGAGGAAGCTCCCACAGTaGCTCGAGGCTGTGCGTCATGTTCCCACAGTGGAT | + |
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Preference number: 6 (lower is better) Translates to: WYPSLLMRKLPQ*LEAVRHVPTVD Trigger: ATCCACTGTGGGAACATGACGCACAGCCTCGAGCCACTGTGGGAGCTTCCTCATCAGAAGGGAGGGGTACCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000564156.1 ENST00000662762.1 |
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| CDS CCA 72 bp | AGCCCTATTGTTTCCTTCGGACCCCATCCGACTGTGTaGCACAGCTTCTTTATATCAGCTCACTCCTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: SPIVSFGPHPTV*HSFFISAHSSG Trigger: CCCAGAGGAGTGAGCTGATATAAAGAAGCTGTGCCACACAGTCGGATGGGGTCCGAAGGAAACAATAGGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000564156.1 ENST00000662237.1 ENST00000662762.1 |
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| CDS CCA 72 bp | ACTATAGATGAGAGGCTGCTACCAGAGCTTCCCTTTTaGAAATTCCCGCACCTAGGGCCACATCACCACACC | + |
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Preference number: 6 (lower is better) Translates to: TIDERLLPELPF*KFPHLGPHHHT Trigger: GGTGTGGTGATGTGGCCCTAGGTGCGGGAATTTCCAAAAGGGAAGCTCTGGTAGCAGCCTCTCATCTATAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000564156.1 ENST00000662762.1 |
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| CDS CCA 72 bp | GACTCTGCGGTCTTAACCAGTCTTAACCCACCTCTCTaGGTGATAGTCCAGAAATGCCACCAAGATCACATG | + |
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Preference number: 6 (lower is better) Translates to: DSAVLTSLNPPL*VIVQKCHQDHM Trigger: CATGTGATCTTGGTGGCATTTCTGGACTATCACCCAGAGAGGTGGGTTAAGACTGGTTAAGACCGCAGAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000564156.1 ENST00000662237.1 ENST00000662762.1 |
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| CDS CAA 72 bp | GTGGCTCGAGGCTGTGCGTCATGTTCCCACAGTGGATaGCAGAATCATTGTGAGGGTAGAGACCAATCATTT | + |
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Preference number: 6 (lower is better) Translates to: VARGCASCSHSG*QNHCEGRDQSF Trigger: AAATGATTGGTCTCTACCCTCACAATGATTCTGCAATCCACTGTGGGAACATGACGCACAGCCTCGAGCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000564156.1 ENST00000662762.1 |
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| CDS GCA 72 bp | AGTCTTAACCCACCTCTCTGGGTGATAGTCCAGAAATaGCACCAAGATCACATGTACAGCCAAGGCAGACAT | + |
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Preference number: 6 (lower is better) Translates to: SLNPPLWVIVQK*HQDHMYSQGRH Trigger: ATGTCTGCCTTGGCTGTACATGTGATCTTGGTGGCATTTCTGGACTATCACCCAGAGAGGTGGGTTAAGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000564156.1 ENST00000662237.1 ENST00000662762.1 |
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| CDS TCA 72 bp | GCACAGCTTCTTTATATCAGCTCACTCCTCTGGGCCTaGGTAAACCATGTGCCTGATGATCTGGAGAAATGT | + |
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Preference number: 6 (lower is better) Translates to: AQLLYISSLLWA*VNHVPDDLEKC Trigger: ACATTTCTCCAGATCATCAGGCACATGGTTTACTCAGGCCCAGAGGAGTGAGCTGATATAAAGAAGCTGTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000564156.1 ENST00000662237.1 ENST00000662762.1 |
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| CDS CAA 72 bp | TTAGATTTCTTCTTCAATACTCATCACTCAGCCCTATaGTTTCCTTCGGACCCCATCCGACTGTGTGGCACA | + |
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Preference number: 6 (lower is better) Translates to: LDFFFNTHHSAL*FPSDPIRLCGT Trigger: TGTGCCACACAGTCGGATGGGGTCCGAAGGAAACAATAGGGCTGAGTGATGAGTATTGAAGAAGAAATCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000564156.1 ENST00000662237.1 ENST00000662762.1 |
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| CDS CCA 72 bp | AGGTTGTCAATTTGTTTATCCGTTTTCAGAAACTGTTaGCACAGGATGCATTTGAAAGGAGGCAGGATGCAG | + |
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Preference number: 6 (lower is better) Translates to: RLSICLSVFRNC*HRMHLKGGRMQ Trigger: CTGCATCCTGCCTCCTTTCAAATGCATCCTGTGCCAACAGTTTCTGAAAACGGATAAACAAATTGACAACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000564156.1 ENST00000662237.1 ENST00000662762.1 |
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| CDS CAA 72 bp | TGCCTGATGATCTGGAGAAATGTTTCATCTTTGCATTaGAGGTTGTCAATTTGTTTATCCGTTTTCAGAAAC | + |
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Preference number: 6 (lower is better) Translates to: CLMIWRNVSSLH*RLSICLSVFRN Trigger: GTTTCTGAAAACGGATAAACAAATTGACAACCTCAAATGCAAAGATGAAACATTTCTCCAGATCATCAGGCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000564156.1 ENST00000662237.1 ENST00000662762.1 |
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