Pregenerated sensors for LINC01892 (Homo sapiens)
Ensembl gene IDs: ENSG00000265514Ensembl transcript IDs: ENST00000579141.1, ENST00000583985.2, ENST00000656896.1, ENST00000661003.1, ENST00000665972.1, ENST00000670963.1
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCAGCAAGATTTATCGTGAAGAGTGAAAGAACAAAGCTTCCACAGTaGGGAAGGGGACCCAAGTGGGTTGCCGCTGTTGGCTGGGGTGGC | + |
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Preference number: 5 (lower is better) Translates to: AARFIVKSERTKLPQ*GRGPKWVAAVGWGG Trigger: GCCACCCCAGCCAACAGCGGCAACCCACTTGGGTCCCCTTCCCCACTGTGGAAGCTTTGTTCTTTCACTCTTCACGATAAATCTTGCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000583985.2 |
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| CDS TCA 90 bp | ATGATGTCCATATCCTCACCAACAAGACAGGTGAATCACCCCAGATaGCTCCTGCTAGCAACCTGCTATGTGCACCAGGCATCGCTGCTT | + |
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Preference number: 5 (lower is better) Translates to: MMSISSPTRQVNHPR*LLLATCYVHQASLL Trigger: AAGCAGCGATGCCTGGTGCACATAGCAGGTTGCTAGCAGGAGTCATCTGGGGTGATTCACCTGTCTTGTTGGTGAGGATATGGACATCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000579141.1 ENST00000583985.2 ENST00000656896.1 ENST00000661003.1 ENST00000665972.1 ENST00000670963.1 |
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| CDS CCA 90 bp | ACAGCTCTTAAAGGTGGTGTGTCCAGAGTTGTTTATTCCTCCCAGTaGGTTCATGGTCTGGCGGACTTCAGGAATGAAGCCACAGACCCT | + |
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Preference number: 5 (lower is better) Translates to: TALKGGVSRVVYSSQ*VHGLADFRNEATDP Trigger: AGGGTCTGTGGCTTCATTCCTGAAGTCCGCCAGACCATGAACCCACTGGGAGGAATAAACAACTCTGGACACACCACCTTTAAGAGCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583985.2 |
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| CDS CCA 90 bp | ACAGCTCTTAAAGGTGGCATGTCCAGAGTTGTTTGTTCCTCCCAGTaGGTTTGTGGTCTCGCTGACTTCAGGAATGAAGCCACAGACCCT | + |
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Preference number: 5 (lower is better) Translates to: TALKGGMSRVVCSSQ*VCGLADFRNEATDP Trigger: AGGGTCTGTGGCTTCATTCCTGAAGTCAGCGAGACCACAAACCCACTGGGAGGAACAAACAACTCTGGACATGCCACCTTTAAGAGCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670963.1 |
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| CDS TCA 90 bp | TGTGCACCAGGCATCGCTGCTTCTGTTGGGCATCGTAGCTGCCATTaGGTCTATTTCAGTAGCTCTTTAGGAGCATCCAGCCAAATTCTG | + |
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Preference number: 5 (lower is better) Translates to: CAPGIAASVGHRSCH*VYFSSSLGASSQIL Trigger: CAGAATTTGGCTGGATGCTCCTAAAGAGCTACTGAAATAGACTCAATGGCAGCTACGATGCCCAACAGAAGCAGCGATGCCTGGTGCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000579141.1 ENST00000583985.2 ENST00000656896.1 ENST00000661003.1 ENST00000665972.1 ENST00000670963.1 |
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| CDS TCA 90 bp | ATGCAGACCCAAAGAGTGAGCAGCAGCAAGATTTATCGTGAAGAGTaGAAGAACAAAGCTTCCACAGTGGGGAAGGGGACCCAAGTGGGT | + |
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Preference number: 5 (lower is better) Translates to: MQTQRVSSSKIYREE*KNKASTVGKGTQVG Trigger: ACCCACTTGGGTCCCCTTCCCCACTGTGGAAGCTTTGTTCTTTCACTCTTCACGATAAATCTTGCTGCTGCTCACTCTTTGGGTCTGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000583985.2 |
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| CDS TCA 90 bp | CCACAGGCAAGCTCATGTGGGACTCTATATCACTTCAGGGATTTCTaGGAGTCCCCAGATGATGTCCATATCCTCACCAACAAGACAGGT | + |
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Preference number: 5 (lower is better) Translates to: PQASSCGTLYHFRDF*ESPDDVHILTNKTG Trigger: ACCTGTCTTGTTGGTGAGGATATGGACATCATCTGGGGACTCTCAGAAATCCCTGAAGTGATATAGAGTCCCACATGAGCTTGCCTGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000579141.1 ENST00000583985.2 ENST00000656896.1 ENST00000661003.1 ENST00000665972.1 ENST00000670963.1 |
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| CDS TCA 90 bp | CTCGCCTTCCCACAGAGACTAGGAGACAGGGGCCTTATCTTCAGGTaGTGCCTCCAAGTGACTTTGGTTTATGAACACTACGTTATTGGT | + |
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Preference number: 5 (lower is better) Translates to: LAFPQRLGDRGLIFR*CLQVTLVYEHYVIG Trigger: ACCAATAACGTAGTGTTCATAAACCAAAGTCACTTGGAGGCATCACCTGAAGATAAGGCCCCTGTCTCCTAGTCTCTGTGGGAAGGCGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000583985.2 ENST00000656896.1 |
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| CDS CCA 90 bp | TGTTCTTTCAGATGTTCAGATGTGTCCGGAGTTTCTTCCTTCTGGTaGGTTCATGGTCTCGCTGACCTCAGGAATGAAGACTCAGACCTT | + |
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Preference number: 5 (lower is better) Translates to: CSFRCSDVSGVSSFW*VHGLADLRNEDSDL Trigger: AAGGTCTGAGTCTTCATTCCTGAGGTCAGCGAGACCATGAACCCACCAGAAGGAAGAAACTCCGGACACATCTGAACATCTGAAAGAACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670963.1 |
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| CDS CCA 90 bp | GTTTGTTCTTTCAGATGTTCAGATGTGTCCGGAGTTTCTTCCTTCTaGTGGGTTCATGGTCTCGCTGACCTCAGGAATGAAGACTCAGAC | + |
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Preference number: 5 (lower is better) Translates to: VCSFRCSDVSGVSSF*WVHGLADLRNEDSD Trigger: GTCTGAGTCTTCATTCCTGAGGTCAGCGAGACCATGAACCCACCAGAAGGAAGAAACTCCGGACACATCTGAACATCTGAAAGAACAAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670963.1 |
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| CDS TCA 90 bp | CAGGGGCCTTATCTTCAGGTGATGCCTCCAAGTGACTTTGGTTTATaGACACTACGTTATTGGTTTGTAAAACACCACAGGCAAGCTCAT | + |
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Preference number: 5 (lower is better) Translates to: QGPYLQVMPPSDFGL*TLRYWFVKHHRQAH Trigger: ATGAGCTTGCCTGTGGTGTTTTACAAACCAATAACGTAGTGTTCATAAACCAAAGTCACTTGGAGGCATCACCTGAAGATAAGGCCCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000583985.2 ENST00000656896.1 |
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| CDS TCA 90 bp | ACCGGGATCTCTATGTCTTGTTCATCAATGTCTTTACGTAGAACTTaGCAATGCCTCCAAGTGACTTTGGTTTATGAACACTACGTTATT | + |
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Preference number: 5 (lower is better) Translates to: TGISMSCSSMSLRRT*QCLQVTLVYEHYVI Trigger: AATAACGTAGTGTTCATAAACCAAAGTCACTTGGAGGCATTGTCAAGTTCTACGTAAAGACATTGATGAACAAGACATAGAGATCCCGGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670963.1 |
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| CDS GCA 90 bp | TATTTCAGTAGCTCTTTAGGAGCATCCAGCCAAATTCTGAATCTTTaGAGTGTTACAATTCTTAAAGATGGTGTGTCTGGAGTTTGTTCT | + |
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Preference number: 5 (lower is better) Translates to: YFSSSLGASSQILNL*SVTILKDGVSGVCS Trigger: AGAACAAACTCCAGACACACCATCTTTAAGAATTGTAACACTGCAAAGATTCAGAATTTGGCTGGATGCTCCTAAAGAGCTACTGAAATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670963.1 |
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| CDS CAA 72 bp | CAAAGCTTCCACAGCATGGAAGGGGAGCCAAGCGGGTaGCAGCTGCTGGCTGGAGTGGCCATCTTTTATTCC | + |
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Preference number: 6 (lower is better) Translates to: QSFHSMEGEPSG*QLLAGVAIFYS Trigger: GGAATAAAAGATGGCCACTCCAGCCAGCAGCTGCAACCCGCTTGGCTCCCCTTCCATGCTGTGGAAGCTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670963.1 |
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| CDS CCA 72 bp | TTTATCGTGAAGAGTGAAAGAACAAAGCTTCCACAGTaGGGAAGGGGACCCAAGTGGGTTGCCGCTGTTGGC | + |
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Preference number: 6 (lower is better) Translates to: FIVKSERTKLPQ*GRGPKWVAAVG Trigger: GCCAACAGCGGCAACCCACTTGGGTCCCCTTCCCCACTGTGGAAGCTTTGTTCTTTCACTCTTCACGATAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000583985.2 |
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| CDS CCA 72 bp | CCAGAGTTGTTTATTCCTCCCAGTGGGTTCATGGTCTaGCGGACTTCAGGAATGAAGCCACAGACCCTCACA | + |
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Preference number: 6 (lower is better) Translates to: PELFIPPSGFMV*RTSGMKPQTLT Trigger: TGTGAGGGTCTGTGGCTTCATTCCTGAAGTCCGCCAGACCATGAACCCACTGGGAGGAATAAACAACTCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583985.2 |
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| CDS TCA 72 bp | ATATCCTCACCAACAAGACAGGTGAATCACCCCAGATaGCTCCTGCTAGCAACCTGCTATGTGCACCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: ISSPTRQVNHPR*LLLATCYVHQA Trigger: TGCCTGGTGCACATAGCAGGTTGCTAGCAGGAGTCATCTGGGGTGATTCACCTGTCTTGTTGGTGAGGATAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000579141.1 ENST00000583985.2 ENST00000656896.1 ENST00000661003.1 ENST00000665972.1 ENST00000670963.1 |
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| CDS CCA 72 bp | AAAGGTGGTGTGTCCAGAGTTGTTTATTCCTCCCAGTaGGTTCATGGTCTGGCGGACTTCAGGAATGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: KGGVSRVVYSSQ*VHGLADFRNEA Trigger: GGCTTCATTCCTGAAGTCCGCCAGACCATGAACCCACTGGGAGGAATAAACAACTCTGGACACACCACCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583985.2 |
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| CDS CCA 72 bp | AGATGTTCAGATGTGTCCAGAGTTCCTTCCTTCTGGTaGGTTCATGGTCTCGCTGACTTCAGGAGTGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: RCSDVSRVPSFW*VHGLADFRSEA Trigger: GGCTTCACTCCTGAAGTCAGCGAGACCATGAACCCACCAGAAGGAAGGAACTCTGGACACATCTGAACATCT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583985.2 |
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| CDS CCA 72 bp | TATTGTGAAGAACAAAAGAACAAAGCTTCCACAGCATaGAAGGGGAGCCAAGCGGGTTGCAGCTGCTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: YCEEQKNKASTA*KGSQAGCSCWL Trigger: CAGCCAGCAGCTGCAACCCGCTTGGCTCCCCTTCCATGCTGTGGAAGCTTTGTTCTTTTGTTCTTCACAATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670963.1 |
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| CDS CAA 72 bp | GCAACCTGCTATGTGCACCAGGCATCGCTGCTTCTGTaGGGCATCGTAGCTGCCATTGAGTCTATTTCAGTA | + |
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Preference number: 6 (lower is better) Translates to: ATCYVHQASLLL*GIVAAIESISV Trigger: TACTGAAATAGACTCAATGGCAGCTACGATGCCCAACAGAAGCAGCGATGCCTGGTGCACATAGCAGGTTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000579141.1 ENST00000583985.2 ENST00000656896.1 ENST00000661003.1 ENST00000665972.1 ENST00000670963.1 |
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| CDS CCA 72 bp | AGATGTTCAGATGTGTCCGGAGTTTCTTCCTTCTGGTaGGTTCATGGTCTCGCTGACCTCAGGAATGAAGAC | + |
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Preference number: 6 (lower is better) Translates to: RCSDVSGVSSFW*VHGLADLRNED Trigger: GTCTTCATTCCTGAGGTCAGCGAGACCATGAACCCACCAGAAGGAAGAAACTCCGGACACATCTGAACATCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670963.1 |
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| CDS TCA 72 bp | CAAAGAGTGAGCAGCAGCAAGATTTATCGTGAAGAGTaGAAGAACAAAGCTTCCACAGTGGGGAAGGGGACC | + |
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Preference number: 6 (lower is better) Translates to: QRVSSSKIYREE*KNKASTVGKGT Trigger: GGTCCCCTTCCCCACTGTGGAAGCTTTGTTCTTTCACTCTTCACGATAAATCTTGCTGCTGCTCACTCTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000583985.2 |
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| CDS TCA 72 bp | CCACAGAGACTAGGAGACAGGGGCCTTATCTTCAGGTaGTGCCTCCAAGTGACTTTGGTTTATGAACACTAC | + |
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Preference number: 6 (lower is better) Translates to: PQRLGDRGLIFR*CLQVTLVYEHY Trigger: GTAGTGTTCATAAACCAAAGTCACTTGGAGGCATCACCTGAAGATAAGGCCCCTGTCTCCTAGTCTCTGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000583985.2 ENST00000656896.1 |
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| CDS GCA 72 bp | AGTAGCTCTTTAGGAGCATCCAGCCAAATTCTGAATTaGTTGGCGATAGGCAATAGTCCCATCTGGGTCACC | + |
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Preference number: 6 (lower is better) Translates to: SSSLGASSQILN*LAIGNSPIWVT Trigger: GGTGACCCAGATGGGACTATTGCCTATCGCCAAGCAATTCAGAATTTGGCTGGATGCTCCTAAAGAGCTACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583985.2 |
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| CDS CCA 72 bp | TTCAGATGTTCAGATGTGTCCGGAGTTTCTTCCTTCTaGTGGGTTCATGGTCTCGCTGACCTCAGGAATGAA | + |
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Preference number: 6 (lower is better) Translates to: FRCSDVSGVSSF*WVHGLADLRNE Trigger: TTCATTCCTGAGGTCAGCGAGACCATGAACCCACCAGAAGGAAGAAACTCCGGACACATCTGAACATCTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670963.1 |
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| CDS TCA 72 bp | AGCTCATGTGGGACTCTATATCACTTCAGGGATTTCTaGGAGTCCCCAGATGATGTCCATATCCTCACCAAC | + |
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Preference number: 6 (lower is better) Translates to: SSCGTLYHFRDF*ESPDDVHILTN Trigger: GTTGGTGAGGATATGGACATCATCTGGGGACTCTCAGAAATCCCTGAAGTGATATAGAGTCCCACATGAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000579141.1 ENST00000583985.2 ENST00000656896.1 ENST00000661003.1 ENST00000665972.1 ENST00000670963.1 |
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| CDS CAA 72 bp | CAAAATGTGTCTGGAATGTATTCCTCTGGCAGGTTCTaGGTCTCACTGACTTCAAGAATGAAGCTGCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: QNVSGMYSSGRF*VSLTSRMKLQA Trigger: GGCCTGCAGCTTCATTCTTGAAGTCAGTGAGACCAAGAACCTGCCAGAGGAATACATTCCAGACACATTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000583985.2 |
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| CDS CAA 72 bp | AGCTCTTTAGGAGCATCCAGCCAAATTCTGAATTGCTaGGCGATAGGCAATAGTCCCATCTGGGTCACCAAA | + |
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Preference number: 6 (lower is better) Translates to: SSLGASSQILNC*AIGNSPIWVTK Trigger: TTTGGTGACCCAGATGGGACTATTGCCTATCGCCAAGCAATTCAGAATTTGGCTGGATGCTCCTAAAGAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583985.2 |
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| CDS TCA 72 bp | GCTTTTATTCCTTATTTGGCCCAGCCCACATCCTGCTaGTTGGTTCATTTTACAGAGAGCCAATTGGTCCAT | + |
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Preference number: 6 (lower is better) Translates to: AFIPYLAQPTSC*LVHFTESQLVH Trigger: ATGGACCAATTGGCTCTCTGTAAAATGAACCAATCAGCAGGATGTGGGCTGGGCCAAATAAGGAATAAAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000583985.2 |
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| CDS TCA 72 bp | GAGACAGGGGCCTTATCTTCAGGTGATGCCTCCAAGTaGCTTTGGTTTATGAACACTACGTTATTGGTTTGT | + |
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Preference number: 6 (lower is better) Translates to: ETGALSSGDASK*LWFMNTTLLVC Trigger: ACAAACCAATAACGTAGTGTTCATAAACCAAAGTCACTTGGAGGCATCACCTGAAGATAAGGCCCCTGTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000583985.2 ENST00000656896.1 |
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| CDS CCA 72 bp | TCTGGGTCACCAAAATGTGTCTGGAATGTATTCCTCTaGCAGGTTCTTGGTCTCACTGACTTCAAGAATGAA | + |
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Preference number: 6 (lower is better) Translates to: SGSPKCVWNVFL*QVLGLTDFKNE Trigger: TTCATTCTTGAAGTCAGTGAGACCAAGAACCTGCCAGAGGAATACATTCCAGACACATTTTGGTGACCCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000583985.2 |
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| CDS TCA 72 bp | TTAAGGCTAGTGAAGAACACCTTTGGGATGTGGGGTTaGGCTGTTGGAAACTATGTTAGTGTTAAGCCTTTA | + |
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Preference number: 6 (lower is better) Translates to: LRLVKNTFGMWG*AVGNYVSVKPL Trigger: TAAAGGCTTAACACTAACATAGTTTCCAACAGCTCAACCCCACATCCCAAAGGTGTTCTTCACTAGCCTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661003.1 ENST00000665972.1 |
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| CDS CCA 72 bp | AGAGTGCTGATTGATGCGTTTTTACAGAGTGCTGATTaGTGTGTTTACAATCCTTTAGCTAGACACAGAGTG | + |
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Preference number: 6 (lower is better) Translates to: RVLIDAFLQSAD*CVYNPLARHRV Trigger: CACTCTGTGTCTAGCTAAAGGATTGTAAACACACCAATCAGCACTCTGTAAAAACGCATCAATCAGCACTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000670963.1 |
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| CDS CAA 72 bp | ACAGAGAGCCAATTGGTCCATTTTACAGAGTGCTGTTaGGTGCATTTTTACACAGTGCTGATTGCTGCATTT | + |
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Preference number: 6 (lower is better) Translates to: TESQLVHFTECC*VHFYTVLIAAF Trigger: AAATGCAGCAATCAGCACTGTGTAAAAATGCACCAAACAGCACTCTGTAAAATGGACCAATTGGCTCTCTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000583985.2 |
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| CDS TCA 72 bp | TATCTTCAGGTGATGCCTCCAAGTGACTTTGGTTTATaGACACTACGTTATTGGTTTGTAAAACACCACAGG | + |
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Preference number: 6 (lower is better) Translates to: YLQVMPPSDFGL*TLRYWFVKHHR Trigger: CCTGTGGTGTTTTACAAACCAATAACGTAGTGTTCATAAACCAAAGTCACTTGGAGGCATCACCTGAAGATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000583985.2 ENST00000656896.1 |
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| CDS CCA 72 bp | CATCCTGCTGATTGGTTCATTTTACAGAGAGCCAATTaGTCCATTTTACAGAGTGCTGTTTGGTGCATTTTT | + |
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Preference number: 6 (lower is better) Translates to: HPADWFILQRAN*SILQSAVWCIF Trigger: AAAAATGCACCAAACAGCACTCTGTAAAATGGACCAATTGGCTCTCTGTAAAATGAACCAATCAGCAGGATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000583985.2 |
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| CDS TCA 72 bp | TCTATGTCTTGTTCATCAATGTCTTTACGTAGAACTTaGCAATGCCTCCAAGTGACTTTGGTTTATGAACAC | + |
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Preference number: 6 (lower is better) Translates to: SMSCSSMSLRRT*QCLQVTLVYEH Trigger: GTGTTCATAAACCAAAGTCACTTGGAGGCATTGTCAAGTTCTACGTAAAGACATTGATGAACAAGACATAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670963.1 |
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| CDS CCA 72 bp | AGAGTGCTGATTGGTGTGTTTTTACAGAGTGCAGATTaGTGCATTTACAATTCTTTAGCTAGACAGAAAAGT | + |
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Preference number: 6 (lower is better) Translates to: RVLIGVFLQSAD*CIYNSLARQKS Trigger: ACTTTTCTGTCTAGCTAAAGAATTGTAAATGCACCAATCTGCACTCTGTAAAAACACACCAATCAGCACTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000670963.1 |
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| CDS TCA 72 bp | AGTGATAACTATTTCAATAGGGAAAAGAGTCCAGTGTaGACAAAATTCAACTTCGAGTTGTACAGAAGTGAC | + |
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Preference number: 6 (lower is better) Translates to: SDNYFNREKSPV*TKFNFELYRSD Trigger: GTCACTTCTGTACAACTCGAAGTTGAATTTTGTTCACACTGGACTCTTTTCCCTATTGAAATAGTTATCACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000583985.2 ENST00000656896.1 ENST00000661003.1 ENST00000665972.1 |
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| CDS TCA 72 bp | TTTTACAATTCTGAAGCTCCAAGTGACTTTGGTTTATaGACACTACGTTATTGGTTTGTAAAACACCACAGG | + |
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Preference number: 6 (lower is better) Translates to: FYNSEAPSDFGL*TLRYWFVKHHR Trigger: CCTGTGGTGTTTTACAAACCAATAACGTAGTGTTCATAAACCAAAGTCACTTGGAGCTTCAGAATTGTAAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000661003.1 ENST00000665972.1 |
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