Pregenerated sensors for LINC01891 (Homo sapiens)
Ensembl gene IDs: ENSG00000231682Ensembl transcript IDs: ENST00000439798.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ATGAATCTTCAGCCGGAAACTTCGCGAGCTGGACCGACAGGGGCTTaGAGGTTGGGTACATTTCCATCTTCAGGGCAGTGGGAGGGAGAG | + |
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Preference number: 5 (lower is better) Translates to: MNLQPETSRAGPTGA*RLGTFPSSGQWEGE Trigger: CTCTCCCTCCCACTGCCCTGAAGATGGAAATGTACCCAACCTTCAAGCCCCTGTCGGTCCAGCTCGCGAAGTTTCCGGCTGAAGATTCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439798.1 |
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| CDS TCA 90 bp | GGTTGGGTACATTTCCATCTTCAGGGCAGTGGGAGGGAGAGTGGCTaGCAATGGAGCAATATAGTGTGTGTCAAAGGTGTAGTCATCAGG | + |
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Preference number: 5 (lower is better) Translates to: GWVHFHLQGSGRESG*QWSNIVCVKGVVIR Trigger: CCTGATGACTACACCTTTGACACACACTATATTGCTCCATTGTCAGCCACTCTCCCTCCCACTGCCCTGAAGATGGAAATGTACCCAACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439798.1 |
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| CDS CCA 90 bp | TCTCATCCATCTGATAATGAATCTTCAGCCGGAAACTTCGCGAGCTaGACCGACAGGGGCTTGAAGGTTGGGTACATTTCCATCTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: SHPSDNESSAGNFAS*TDRGLKVGYISIFR Trigger: CCTGAAGATGGAAATGTACCCAACCTTCAAGCCCCTGTCGGTCCAGCTCGCGAAGTTTCCGGCTGAAGATTCATTATCAGATGGATGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439798.1 |
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| CDS TCA 72 bp | CAGCCGGAAACTTCGCGAGCTGGACCGACAGGGGCTTaGAGGTTGGGTACATTTCCATCTTCAGGGCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: QPETSRAGPTGA*RLGTFPSSGQW Trigger: CCACTGCCCTGAAGATGGAAATGTACCCAACCTTCAAGCCCCTGTCGGTCCAGCTCGCGAAGTTTCCGGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439798.1 |
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| CDS GCA 72 bp | GGGAAGAGAACCTTGGGCTTCAGGAGCTTTTCACATTaGTTGACTCCTTCATTCTTGCCACGGTCTTACGCC | + |
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Preference number: 6 (lower is better) Translates to: GKRTLGFRSFSH*LTPSFLPRSYA Trigger: GGCGTAAGACCGTGGCAAGAATGAAGGAGTCAAGCAATGTGAAAAGCTCCTGAAGCCCAAGGTTCTCTTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439798.1 |
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| CDS CCA 72 bp | TCTGATAATGAATCTTCAGCCGGAAACTTCGCGAGCTaGACCGACAGGGGCTTGAAGGTTGGGTACATTTCC | + |
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Preference number: 6 (lower is better) Translates to: SDNESSAGNFAS*TDRGLKVGYIS Trigger: GGAAATGTACCCAACCTTCAAGCCCCTGTCGGTCCAGCTCGCGAAGTTTCCGGCTGAAGATTCATTATCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439798.1 |
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| CDS GCA 72 bp | GGGCTTTCTCAAGCATCCTTAAGCATGTTAGGGCAGTaGTTCTCTAGGTGGTTTCACCTGCATATTCACTCC | + |
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Preference number: 6 (lower is better) Translates to: GLSQASLSMLGQ*FSRWFHLHIHS Trigger: GGAGTGAATATGCAGGTGAAACCACCTAGAGAAGCACTGCCCTAACATGCTTAAGGATGCTTGAGAAAGCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439798.1 |
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| CDS CAA 90 bp | GAAATAAGTGCTTTAGCAATAAAGAGTGAAGAGGAGAGTAGAATTTaGTGTTGCAGATCATTTTGTTGGCTCAACATCTTTCTCCACACA | + |
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Preference number: 6 (lower is better) Translates to: EISALAIKSEEESRI*CCRSFCWLNIFLHT Trigger: TGTGTGGAGAAAGATGTTGAGCCAACAAAATGATCTGCAACACAAAATTCTACTCTCCTCTTCACTCTTTATTGCTAAAGCACTTATTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439798.1 |
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| CDS CAA 72 bp | GCTTTAGCAATAAAGAGTGAAGAGGAGAGTAGAATTTaGTGTTGCAGATCATTTTGTTGGCTCAACATCTTT | + |
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Preference number: 6 (lower is better) Translates to: ALAIKSEEESRI*CCRSFCWLNIF Trigger: AAAGATGTTGAGCCAACAAAATGATCTGCAACACAAAATTCTACTCTCCTCTTCACTCTTTATTGCTAAAGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439798.1 |
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