Pregenerated sensors for LINC01888 (Homo sapiens)
Ensembl gene IDs: ENSG00000237576Ensembl transcript IDs: ENST00000415138.1, ENST00000457602.1, ENST00000655763.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTGATTTCCAAATGCGTTAAGGGCCACTCCAGGCCTACGTCCTGGTaGAGTAGGCTTCCGGCAGAGGGCGCACATCTGGACTCTGCATCT | + |
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Preference number: 5 (lower is better) Translates to: LISKCVKGHSRPTSW*SRLPAEGAHLDSAS Trigger: AGATGCAGAGTCCAGATGTGCGCCCTCTGCCGGAAGCCTACTGCACCAGGACGTAGGCCTGGAGTGGCCCTTAACGCATTTGGAAATCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415138.1 ENST00000457602.1 ENST00000655763.1 |
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| CDS CCA 90 bp | AGACTGATTTCCAAATGCGTTAAGGGCCACTCCAGGCCTACGTCCTaGTGCAGTAGGCTTCCGGCAGAGGGCGCACATCTGGACTCTGCA | + |
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Preference number: 5 (lower is better) Translates to: RLISKCVKGHSRPTS*CSRLPAEGAHLDSA Trigger: TGCAGAGTCCAGATGTGCGCCCTCTGCCGGAAGCCTACTGCACCAGGACGTAGGCCTGGAGTGGCCCTTAACGCATTTGGAAATCAGTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415138.1 ENST00000457602.1 ENST00000655763.1 |
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| CDS GCA 72 bp | AAATGCGTTAAGGGCCACTCCAGGCCTACGTCCTGGTaGAGTAGGCTTCCGGCAGAGGGCGCACATCTGGAC | + |
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Preference number: 6 (lower is better) Translates to: KCVKGHSRPTSW*SRLPAEGAHLD Trigger: GTCCAGATGTGCGCCCTCTGCCGGAAGCCTACTGCACCAGGACGTAGGCCTGGAGTGGCCCTTAACGCATTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415138.1 ENST00000457602.1 ENST00000655763.1 |
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| CDS CCA 72 bp | CCTGGTGCAGTAGGCTTCCGGCAGAGGGCGCACATCTaGACTCTGCATCTCCTCCAGGTGCTTCCTCCAAAC | + |
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Preference number: 6 (lower is better) Translates to: PGAVGFRQRAHI*TLHLLQVLPPN Trigger: GTTTGGAGGAAGCACCTGGAGGAGATGCAGAGTCCAGATGTGCGCCCTCTGCCGGAAGCCTACTGCACCAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415138.1 ENST00000457602.1 ENST00000655763.1 |
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| CDS CCA 72 bp | TCCAAATGCGTTAAGGGCCACTCCAGGCCTACGTCCTaGTGCAGTAGGCTTCCGGCAGAGGGCGCACATCTG | + |
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Preference number: 6 (lower is better) Translates to: SKCVKGHSRPTS*CSRLPAEGAHL Trigger: CAGATGTGCGCCCTCTGCCGGAAGCCTACTGCACCAGGACGTAGGCCTGGAGTGGCCCTTAACGCATTTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415138.1 ENST00000457602.1 ENST00000655763.1 |
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| CDS GCA 72 bp | CTCTGCATCTCCTCCAGGTGCTTCCTCCAAACTAAGTaGTGGTGTGAACACGGGTCCCAATATGCCCCACTC | + |
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Preference number: 6 (lower is better) Translates to: LCISSRCFLQTK*WCEHGSQYAPL Trigger: GAGTGGGGCATATTGGGACCCGTGTTCACACCAGCACTTAGTTTGGAGGAAGCACCTGGAGGAGATGCAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000415138.1 ENST00000655763.1 |
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| CDS CCA 72 bp | TGCATCTCCTCCAGGTGCTTCCTCCAAACTAAGTGCTaGTGTGAACACGGGTCCCAATATGCCCCACTCAAA | + |
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Preference number: 6 (lower is better) Translates to: CISSRCFLQTKC*CEHGSQYAPLK Trigger: TTTGAGTGGGGCATATTGGGACCCGTGTTCACACCAGCACTTAGTTTGGAGGAAGCACCTGGAGGAGATGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000415138.1 ENST00000655763.1 |
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| CDS GCA 72 bp | ACGGGTCCTGATAGGCTCTGCATAACTCTCTTTTGCTaGCAGGTGGGAATTTCAATTCTGCTCTTGCCTCTC | + |
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Preference number: 6 (lower is better) Translates to: TGPDRLCITLFC*QVGISILLLPL Trigger: GAGAGGCAAGAGCAGAATTGAAATTCCCACCTGGCAGCAAAAGAGAGTTATGCAGAGCCTATCAGGACCCGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457602.1 |
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| CDS GCA 72 bp | CATATTTCAAGTTGGCTAAGCTTGGCTATTAATATGTaGAAGCAGAGTAATTTGCCAAAGAGCCAATTTGAC | + |
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Preference number: 6 (lower is better) Translates to: HISSWLSLAINM*KQSNLPKSQFD Trigger: GTCAAATTGGCTCTTTGGCAAATTACTCTGCTTGCACATATTAATAGCCAAGCTTAGCCAACTTGAAATATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457602.1 |
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| CDS CAA 72 bp | TTTCCAGTAAATCTCCATATTTCAAGTTGGCTAAGCTaGGCTATTAATATGTGCAAGCAGAGTAATTTGCCA | + |
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Preference number: 6 (lower is better) Translates to: FPVNLHISSWLS*AINMCKQSNLP Trigger: TGGCAAATTACTCTGCTTGCACATATTAATAGCCAAGCTTAGCCAACTTGAAATATGGAGATTTACTGGAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457602.1 |
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