Pregenerated sensors for LINC01886 (Homo sapiens)
Ensembl gene IDs: ENSG00000224568Ensembl transcript IDs: ENST00000439893.1, ENST00000443205.2, ENST00000658627.1, ENST00000660653.1, ENST00000662038.1, ENST00000665591.1, ENST00000666630.1, ENST00000669483.1
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ATGCTGCTGTCTGGGGATCCTCAGCTGCAGTGCAAGTGGTGCCCGTaGATTTTGAGACTCCTTCTGCTCCAGGCAGCTTTCCTGAACCTT | + |
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Preference number: 5 (lower is better) Translates to: MLLSGDPQLQCKWCP*ILRLLLLQAAFLNL Trigger: AAGGTTCAGGAAAGCTGCCTGGAGCAGAAGGAGTCTCAAAATTCACGGGCACCACTTGCACTGCAGCTGAGGATCCCCAGACAGCAGCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658627.1 |
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| CDS TCA 90 bp | ACCCTCTGGGAGAGCCCTCAGGATGAAGCAAAACACACAGACTTCTaGAGTGGGCACTCCAACACTGGAGACTCATGGTCTGGGGAAACA | + |
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Preference number: 5 (lower is better) Translates to: TLWESPQDEAKHTDF*SGHSNTGDSWSGET Trigger: TGTTTCCCCAGACCATGAGTCTCCAGTGTTGGAGTGCCCACTTCAGAAGTCTGTGTGTTTTGCTTCATCCTGAGGGCTCTCCCAGAGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000660653.1 |
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| CDS CCA 90 bp | CACAGACTTCTGAAGTGGGCACTCCAACACTGGAGACTCATGGTCTaGGGAAACAATACCAGGTACCATAAAGCCACAGGAGGTACGCAG | + |
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Preference number: 5 (lower is better) Translates to: HRLLKWALQHWRLMV*GNNTRYHKATGGTQ Trigger: CTGCGTACCTCCTGTGGCTTTATGGTACCTGGTATTGTTTCCCCAGACCATGAGTCTCCAGTGTTGGAGTGCCCACTTCAGAAGTCTGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000443205.2 ENST00000660653.1 ENST00000665591.1 ENST00000666630.1 ENST00000669483.1 |
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| CDS CCA 90 bp | TTCATGCAACTGAAGGAGGGTGGCTTGCCAGTGGCGCAAAGCTTGTaGGGTGTGGAAAGCAAGCTTACAGAAGCAGAACAAAGGCAGTTA | + |
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Preference number: 5 (lower is better) Translates to: FMQLKEGGLPVAQSL*GVESKLTEAEQRQL Trigger: TAACTGCCTTTGTTCTGCTTCTGTAAGCTTGCTTTCCACACCCCACAAGCTTTGCGCCACTGGCAAGCCACCCTCCTTCAGTTGCATGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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| CDS TCA 90 bp | TATCCAAGATGGGATCCTCAGGATGAAGCAAAACACACAGACTTCTaGAGTGGGCACTCCAACACTGGAGACTCATGGTCTGGGGAAACA | + |
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Preference number: 5 (lower is better) Translates to: YPRWDPQDEAKHTDF*SGHSNTGDSWSGET Trigger: TGTTTCCCCAGACCATGAGTCTCCAGTGTTGGAGTGCCCACTTCAGAAGTCTGTGTGTTTTGCTTCATCCTGAGGATCCCATCTTGGATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000443205.2 ENST00000665591.1 ENST00000669483.1 |
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| CDS CCA 90 bp | GACGTTGACCTTGATCACCTGGCTGAGGCAGTGTTTAAGGTAATGTaGTATCCAAGATGGGATCCTCCACCTTGGAAGGATAGTTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: DVDLDHLAEAVFKVM*YPRWDPPPWKDSSP Trigger: TGGAGAACTATCCTTCCAAGGTGGAGGATCCCATCTTGGATACCACATTACCTTAAACACTGCCTCAGCCAGGTGATCAAGGTCAACGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000439893.1 ENST00000658627.1 |
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| CDS CCA 72 bp | GACATTCCTATTGCCGCAGAGCATACCACCTGGGGGTaGGGATGCTGCTGTCTGGGGATCCTCAGCTGCAGT | + |
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Preference number: 6 (lower is better) Translates to: DIPIAAEHTTWG*GCCCLGILSCS Trigger: ACTGCAGCTGAGGATCCCCAGACAGCAGCATCCCCACCCCCAGGTGGTATGCTCTGCGGCAATAGGAATGTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000658627.1 |
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| CDS TCA 72 bp | TCTGGGGATCCTCAGCTGCAGTGCAAGTGGTGCCCGTaGATTTTGAGACTCCTTCTGCTCCAGGCAGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: SGDPQLQCKWCP*ILRLLLLQAAF Trigger: GAAAGCTGCCTGGAGCAGAAGGAGTCTCAAAATTCACGGGCACCACTTGCACTGCAGCTGAGGATCCCCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658627.1 |
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| CDS CCA 72 bp | AGGGTGGCTTGCCAGTGGCGCAAAGCTTGTGGGGTGTaGAAAGCAAGCTTACAGAAGCAGAACAAAGGCAGT | + |
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Preference number: 6 (lower is better) Translates to: RVACQWRKACGV*KASLQKQNKGS Trigger: ACTGCCTTTGTTCTGCTTCTGTAAGCTTGCTTTCCACACCCCACAAGCTTTGCGCCACTGGCAAGCCACCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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| CDS CCA 72 bp | CTGAAGGAGGGTGGCTTGCCAGTGGCGCAAAGCTTGTaGGGTGTGGAAAGCAAGCTTACAGAAGCAGAACAA | + |
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Preference number: 6 (lower is better) Translates to: LKEGGLPVAQSL*GVESKLTEAEQ Trigger: TTGTTCTGCTTCTGTAAGCTTGCTTTCCACACCCCACAAGCTTTGCGCCACTGGCAAGCCACCCTCCTTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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| CDS CAA 72 bp | CCTTCGCTATGGCGCCCAGATGGCTGCAATCTAAGCTaGCTCAAGCATGTCTCATTACCTCCACGGTGCTAC | + |
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Preference number: 6 (lower is better) Translates to: PSLWRPDGCNLS*LKHVSLPPRCY Trigger: GTAGCACCGTGGAGGTAATGAGACATGCTTGAGCAAGCTTAGATTGCAGCCATCTGGGCGCCATAGCGAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000443205.2 ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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| CDS CAA 72 bp | CAACTGAAGGAGGGTGGCTTGCCAGTGGCGCAAAGCTaGTGGGGTGTGGAAAGCAAGCTTACAGAAGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: QLKEGGLPVAQS*WGVESKLTEAE Trigger: TTCTGCTTCTGTAAGCTTGCTTTCCACACCCCACAAGCTTTGCGCCACTGGCAAGCCACCCTCCTTCAGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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| CDS CAA 90 bp | CCTAGAAACAGAATGTGCTTTAATGCTGTAGCCCAGACATTCCTATaGCCGCAGAGCATACCACCTGGGGGTGGGGATGCTGCTGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: PRNRMCFNAVAQTFL*PQSIPPGGGDAAVW Trigger: CCAGACAGCAGCATCCCCACCCCCAGGTGGTATGCTCTGCGGCAATAGGAATGTCTGGGCTACAGCATTAAAGCACATTCTGTTTCTAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000658627.1 |
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| CDS CAA 72 bp | AGAATGTGCTTTAATGCTGTAGCCCAGACATTCCTATaGCCGCAGAGCATACCACCTGGGGGTGGGGATGCT | + |
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Preference number: 6 (lower is better) Translates to: RMCFNAVAQTFL*PQSIPPGGGDA Trigger: AGCATCCCCACCCCCAGGTGGTATGCTCTGCGGCAATAGGAATGTCTGGGCTACAGCATTAAAGCACATTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000658627.1 |
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| CDS CAA 90 bp | TTATTCATGCAACTGAAGGAGGGTGGCTTGCCAGTGGCGCAAAGCTaGTGGGGTGTGGAAAGCAAGCTTACAGAAGCAGAACAAAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: LFMQLKEGGLPVAQS*WGVESKLTEAEQRQ Trigger: CTGCCTTTGTTCTGCTTCTGTAAGCTTGCTTTCCACACCCCACAAGCTTTGCGCCACTGGCAAGCCACCCTCCTTCAGTTGCATGAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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| CDS TCA 72 bp | GTACGCAGAGGTCCCAAACCTGATGGAACCAATCTGTaGGCTCTACATAAATCAGACACCGCCTACTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: VRRGPKPDGTNL*ALHKSDTAYWS Trigger: GCTCCAGTAGGCGGTGTCTGATTTATGTAGAGCTCACAGATTGGTTCCATCAGGTTTGGGACCTCTGCGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660653.1 |
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| CDS TCA 72 bp | GAGAGCCCTCAGGATGAAGCAAAACACACAGACTTCTaGAGTGGGCACTCCAACACTGGAGACTCATGGTCT | + |
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Preference number: 6 (lower is better) Translates to: ESPQDEAKHTDF*SGHSNTGDSWS Trigger: AGACCATGAGTCTCCAGTGTTGGAGTGCCCACTTCAGAAGTCTGTGTGTTTTGCTTCATCCTGAGGGCTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660653.1 |
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| CDS GCA 72 bp | AGGGAGAATGGCCTGACAGCTGGGGCTCTGTTGCCATaGTCCCCTAGAAACAGAATGTGCTTTAATGCTGTA | + |
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Preference number: 6 (lower is better) Translates to: RENGLTAGALLP*SPRNRMCFNAV Trigger: TACAGCATTAAAGCACATTCTGTTTCTAGGGGAGCATGGCAACAGAGCCCCAGCTGTCAGGCCATTCTCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658627.1 |
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| CDS GCA 72 bp | CGCCTACTGGAGCCTGACTATAAAATTCACCACATGTaGTGCCAGCTGGCCTTTCCTCTTGGAAATCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: RLLEPDYKIHHM*CQLAFPLGNLL Trigger: GAGGAGATTTCCAAGAGGAAAGGCCAGCTGGCAGCACATGTGGTGAATTTTATAGTCAGGCTCCAGTAGGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660653.1 |
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| CDS CCA 72 bp | CTGAAGTGGGCACTCCAACACTGGAGACTCATGGTCTaGGGAAACAATACCAGGTACCATAAAGCCACAGGA | + |
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Preference number: 6 (lower is better) Translates to: LKWALQHWRLMV*GNNTRYHKATG Trigger: TCCTGTGGCTTTATGGTACCTGGTATTGTTTCCCCAGACCATGAGTCTCCAGTGTTGGAGTGCCCACTTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000443205.2 ENST00000660653.1 ENST00000665591.1 ENST00000666630.1 ENST00000669483.1 |
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| CDS TCA 72 bp | TGGGATCCTCAGGATGAAGCAAAACACACAGACTTCTaGAGTGGGCACTCCAACACTGGAGACTCATGGTCT | + |
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Preference number: 6 (lower is better) Translates to: WDPQDEAKHTDF*SGHSNTGDSWS Trigger: AGACCATGAGTCTCCAGTGTTGGAGTGCCCACTTCAGAAGTCTGTGTGTTTTGCTTCATCCTGAGGATCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000443205.2 ENST00000665591.1 ENST00000669483.1 |
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| CDS TCA 72 bp | ATAATCACTAGAACAGCTGGGATCACTAGAACATGCTaGGATAGGGAGAATGGCCTGACAGCTGGGGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: IITRTAGITRTC*DRENGLTAGAL Trigger: CAGAGCCCCAGCTGTCAGGCCATTCTCCCTATCTCAGCATGTTCTAGTGATCCCAGCTGTTCTAGTGATTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658627.1 |
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| CDS GCA 72 bp | CTACTGGAGCCTGACTATAAAATTCACCACATGTGCTaGCAGCTGGCCTTTCCTCTTGGAAATCTCCTCCCT | + |
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Preference number: 6 (lower is better) Translates to: LLEPDYKIHHMC*QLAFPLGNLLP Trigger: AGGGAGGAGATTTCCAAGAGGAAAGGCCAGCTGGCAGCACATGTGGTGAATTTTATAGTCAGGCTCCAGTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660653.1 |
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| CDS CCA 72 bp | CTTGATCACCTGGCTGAGGCAGTGTTTAAGGTAATGTaGTATCCAAGATGGGATCCTCCACCTTGGAAGGAT | + |
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Preference number: 6 (lower is better) Translates to: LDHLAEAVFKVM*YPRWDPPPWKD Trigger: ATCCTTCCAAGGTGGAGGATCCCATCTTGGATACCACATTACCTTAAACACTGCCTCAGCCAGGTGATCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000439893.1 ENST00000658627.1 |
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| CDS CCA 72 bp | AAAACACACAGACTTCTGAAGTGGGCACTCCAACACTaGAGACTCATGGTCTGGGGAAACAATACCAGGTAC | + |
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Preference number: 6 (lower is better) Translates to: KTHRLLKWALQH*RLMVWGNNTRY Trigger: GTACCTGGTATTGTTTCCCCAGACCATGAGTCTCCAGTGTTGGAGTGCCCACTTCAGAAGTCTGTGTGTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000443205.2 ENST00000660653.1 ENST00000665591.1 ENST00000666630.1 ENST00000669483.1 |
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| CDS CCA 72 bp | TCAAGCTTACACATGATTCTTGCTGTGCAGGCCAGGTaGCTGTTATCTAGGTTTGCTCAAGATGCCTGCACA | + |
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Preference number: 6 (lower is better) Translates to: SSLHMILAVQAR*LLSRFAQDACT Trigger: TGTGCAGGCATCTTGAGCAAACCTAGATAACAGCCACCTGGCCTGCACAGCAAGAATCATGTGTAAGCTTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000443205.2 ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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| CDS CCA 72 bp | TGTGTCCAATTGACTCCAAGCAAAATAGTCACCCTCTaGGAGAGCCCTCAGGATGAAGCAAAACACACAGAC | + |
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Preference number: 6 (lower is better) Translates to: CVQLTPSKIVTL*ESPQDEAKHTD Trigger: GTCTGTGTGTTTTGCTTCATCCTGAGGGCTCTCCCAGAGGGTGACTATTTTGCTTGGAGTCAATTGGACACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000660653.1 |
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| CDS CAA 72 bp | GGTAATGTGGTATCCAAGATGGGATCCTGTGTCCAATaGACTCCAAGCAAAATAGTCACCCTCTGGGAGAGC | + |
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Preference number: 6 (lower is better) Translates to: GNVVSKMGSCVQ*TPSKIVTLWES Trigger: GCTCTCCCAGAGGGTGACTATTTTGCTTGGAGTCAATTGGACACAGGATCCCATCTTGGATACCACATTACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660653.1 |
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| CDS TCA 72 bp | TGTTTACCTCAGGATGAAGCAAAACACACAGACTTCTaGAGTGGGCACTCCAACACTGGAGACTCATGGTCT | + |
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Preference number: 6 (lower is better) Translates to: CLPQDEAKHTDF*SGHSNTGDSWS Trigger: AGACCATGAGTCTCCAGTGTTGGAGTGCCCACTTCAGAAGTCTGTGTGTTTTGCTTCATCCTGAGGTAAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666630.1 |
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| CDS CCA 72 bp | GGGAAAGTTCAGTTACATAATAAGATTAGGGTAGGGTaGCCAGCCTTCCCTGGGCTATGTAAATGTCACACC | + |
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Preference number: 6 (lower is better) Translates to: GKVQLHNKIRVG*PAFPGLCKCHT Trigger: GGTGTGACATTTACATAGCCCAGGGAAGGCTGGCCACCCTACCCTAATCTTATTATGTAACTGAACTTTCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666630.1 |
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| CDS TCA 72 bp | TCAAACTGTGACAGGTTCCTAACTCAAGCTTACACATaGTTCTTGCTGTGCAGGCCAGGTGGCTGTTATCTA | + |
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Preference number: 6 (lower is better) Translates to: SNCDRFLTQAYT*FLLCRPGGCYL Trigger: TAGATAACAGCCACCTGGCCTGCACAGCAAGAATCATGTGTAAGCTTGAGTTAGGAACCTGTCACAGTTTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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| CDS CCA 72 bp | GCTGAGGCAGTGTTTAAGGTAATGTGGTATCCAAGATaGGATCCTCAGGATGAAGCAAAACACACAGACTTC | + |
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Preference number: 6 (lower is better) Translates to: AEAVFKVMWYPR*DPQDEAKHTDF Trigger: GAAGTCTGTGTGTTTTGCTTCATCCTGAGGATCCCATCTTGGATACCACATTACCTTAAACACTGCCTCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000443205.2 ENST00000665591.1 ENST00000669483.1 |
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| CDS CCA 72 bp | CTTGATCACCTGGCTGAGGCAGTGTTTAAGGTAATGTaGTATCCAAGATGGGATCCTCAGGATGAAGCAAAA | + |
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Preference number: 6 (lower is better) Translates to: LDHLAEAVFKVM*YPRWDPQDEAK Trigger: TTTTGCTTCATCCTGAGGATCCCATCTTGGATACCACATTACCTTAAACACTGCCTCAGCCAGGTGATCAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000443205.2 ENST00000665591.1 ENST00000669483.1 |
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| CDS GCA 72 bp | CTAAGCTTGCTCAAGCATGTCTCATTACCTCCACGGTaGTACAGAGACTTACAGACACTAGTTACAGAAAAC | + |
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Preference number: 6 (lower is better) Translates to: LSLLKHVSLPPR*YRDLQTLVTEN Trigger: GTTTTCTGTAACTAGTGTCTGTAAGTCTCTGTAGCACCGTGGAGGTAATGAGACATGCTTGAGCAAGCTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000443205.2 ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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| CDS CAA 72 bp | CTTGGCTGTAACAGGTTTCTTAGATTCACCTTGTTTTaGGTGAACTTGACAATTTCAGGGAGGGACAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: LGCNRFLRFTLF*VNLTISGRDSL Trigger: CAGGCTGTCCCTCCCTGAAATTGTCAAGTTCACCAAAAACAAGGTGAATCTAAGAAACCTGTTACAGCCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000439893.1 ENST00000443205.2 ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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| CDS CAA 72 bp | GCTCCTCTTGGCTGTAACAGGTTTCTTAGATTCACCTaGTTTTTGGTGAACTTGACAATTTCAGGGAGGGAC | + |
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Preference number: 6 (lower is better) Translates to: APLGCNRFLRFT*FLVNLTISGRD Trigger: GTCCCTCCCTGAAATTGTCAAGTTCACCAAAAACAAGGTGAATCTAAGAAACCTGTTACAGCCAAGAGGAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENST00000439893.1 ENST00000443205.2 ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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| CDS CAA 72 bp | AATATCCAGAGGCTGAGCAACAAAAGAAGACAGGGCTaGACTTTTATTCATGCAACTGAAGGAGGGTGGCTT | + |
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Preference number: 6 (lower is better) Translates to: NIQRLSNKRRQG*TFIHATEGGWL Trigger: AAGCCACCCTCCTTCAGTTGCATGAATAAAAGTCAAGCCCTGTCTTCTTTTGTTGCTCAGCCTCTGGATATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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| CDS GCA 72 bp | TACGGGATTTTTCAGAGGAAGACCACAGAGGTAAAGTaGCATTTTTATCACATCACATCAAGGGTACACACC | + |
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Preference number: 6 (lower is better) Translates to: YGIFQRKTTEVK*HFYHITSRVHT Trigger: GGTGTGTACCCTTGATGTGATGTGATAAAAATGGCACTTTACCTCTGTGGTCTTCCTCTGAAAAATCCCGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 7 transcripts: ENST00000439893.1 ENST00000443205.2 ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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| CDS CCA 72 bp | CTGGATTCCCAACAGGCTCCACACAGTATGTCCAAGTaGATATCATCATTAACTCCCCAATCTAGTTACTTA | + |
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Preference number: 6 (lower is better) Translates to: LDSQQAPHSMSK*ISSLTPQSSYL Trigger: TAAGTAACTAGATTGGGGAGTTAATGATGATATCCACTTGGACATACTGTGTGGAGCCTGTTGGGAATCCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666630.1 |
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| CDS CAA 90 bp | CTTGGCTGTAACAGGTTTCTTAGATTCACCTTGTTTTTGGTGAACTaGACAATTTCAGGGAGGGACAGCCTGGTATTTTGTAGAATGTCC | + |
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Preference number: 6 (lower is better) Translates to: LGCNRFLRFTLFLVN*TISGRDSLVFCRMS Trigger: GGACATTCTACAAAATACCAGGCTGTCCCTCCCTGAAATTGTCAAGTTCACCAAAAACAAGGTGAATCTAAGAAACCTGTTACAGCCAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENST00000439893.1 ENST00000443205.2 ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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| CDS TCA 72 bp | TTTATCACATCACATCAAGGGTACACACCAAAACCATaGCTTATCACAGTAGACGTTGACCTTGATCACCTG | + |
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Preference number: 6 (lower is better) Translates to: FITSHQGYTPKP*LITVDVDLDHL Trigger: CAGGTGATCAAGGTCAACGTCTACTGTGATAAGTCATGGTTTTGGTGTGTACCCTTGATGTGATGTGATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000439893.1 ENST00000443205.2 ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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| CDS GCA 72 bp | TTCCTTTCTAACAAAGAGCAGCCTGTAAAATCAAGCTaGAGATATAGATGCTGGCAGTTGTGCCAATCATGT | + |
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Preference number: 6 (lower is better) Translates to: FLSNKEQPVKSS*RYRCWQLCQSC Trigger: ACATGATTGGCACAACTGCCAGCATCTATATCTGCAGCTTGATTTTACAGGCTGCTCTTTGTTAGAAAGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000443205.2 ENST00000662038.1 ENST00000665591.1 ENST00000666630.1 ENST00000669483.1 |
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| CDS CAA 72 bp | AACAGGTTTCTTAGATTCACCTTGTTTTTGGTGAACTaGACAATTTCAGGGAGGGACAGCCTGGTATTTTGT | + |
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Preference number: 6 (lower is better) Translates to: NRFLRFTLFLVN*TISGRDSLVFC Trigger: ACAAAATACCAGGCTGTCCCTCCCTGAAATTGTCAAGTTCACCAAAAACAAGGTGAATCTAAGAAACCTGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENST00000439893.1 ENST00000443205.2 ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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| CDS TCA 72 bp | CTTACAGAAGCAGAACAAAGGCAGTTAATCAAACTGTaGCAGGTTCCTAACTCAAGCTTACACATGATTCTT | + |
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Preference number: 6 (lower is better) Translates to: LTEAEQRQLIKL*QVPNSSLHMIL Trigger: AAGAATCATGTGTAAGCTTGAGTTAGGAACCTGTCACAGTTTGATTAACTGCCTTTGTTCTGCTTCTGTAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000658627.1 ENST00000660653.1 ENST00000662038.1 ENST00000665591.1 ENST00000669483.1 |
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