Pregenerated sensors for LINC01884 (Homo sapiens)
Ensembl gene IDs: ENSG00000233587Ensembl transcript IDs: ENST00000433429.2, ENST00000653854.1, ENST00000654407.1, ENST00000655510.1, ENST00000657386.1, ENST00000665651.1, ENST00000669816.1, ENST00000670184.1, ENST00000671077.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGCTCCTGCGATCCATCAGGAGGAGTACATGGCTCAGGTGTCTGTTaGAATTCTGAAGGCTGGAGGGTCCATGATCAGGGCACTGGCAAA | + |
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Preference number: 5 (lower is better) Translates to: CSCDPSGGVHGSGVC*NSEGWRVHDQGTGK Trigger: TTTGCCAGTGCCCTGATCATGGACCCTCCAGCCTTCAGAATTGCAACAGACACCTGAGCCATGTACTCCTCCTGATGGATCGCAGGAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000654407.1 ENST00000665651.1 ENST00000669816.1 |
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| CDS GCA 90 bp | GTCTGGTGGGTGCCTCCACTCTATCTGAGAAGGAACATGAGGACATaGAGCACCTCACACAGACTATCCTCACAGGTCTCAGGTGTCTGC | + |
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Preference number: 5 (lower is better) Translates to: VWWVPPLYLRRNMRT*STSHRLSSQVSGVC Trigger: GCAGACACCTGAGACCTGTGAGGATAGTCTGTGTGAGGTGCTGCATGTCCTCATGTTCCTTCTCAGATAGAGTGGAGGCACCCACCAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671077.1 |
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| CDS GCA 90 bp | GGCTTTGTGATGTATTCTGTGTTTCGGCTTACCATCTTATGCTCCTaGGATCCATCAGGAGGAGTACATGGCTCAGGTGTCTGTTGCCTC | + |
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Preference number: 5 (lower is better) Translates to: GFVMYSVFRLTILCS*DPSGGVHGSGVCCL Trigger: GAGGCAACAGACACCTGAGCCATGTACTCCTCCTGATGGATCGCAGGAGCATAAGATGGTAAGCCGAAACACAGAATACATCACAAAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657386.1 |
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| CDS GCA 90 bp | AGGATGGGCTTTGTGATGTATTCTGTGTTTCGGCTTACCATCTTATaGTCCTGCGATCCATCAGGAGGAGTACATGGCTCAGGTGTCTGT | + |
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Preference number: 5 (lower is better) Translates to: RMGFVMYSVFRLTIL*SCDPSGGVHGSGVC Trigger: ACAGACACCTGAGCCATGTACTCCTCCTGATGGATCGCAGGAGCATAAGATGGTAAGCCGAAACACAGAATACATCACAAAGCCCATCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000654407.1 ENST00000657386.1 ENST00000669816.1 ENST00000670184.1 |
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| CDS GCA 90 bp | GGCTTTGTGATGTATTCTGTGTTTCGGCTTACCATCTTATGCTCCTaGGATCCATCAGGAGGAGTACATGGCTCAGGTGTCTGTTGCAAT | + |
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Preference number: 5 (lower is better) Translates to: GFVMYSVFRLTILCS*DPSGGVHGSGVCCN Trigger: ATTGCAACAGACACCTGAGCCATGTACTCCTCCTGATGGATCGCAGGAGCATAAGATGGTAAGCCGAAACACAGAATACATCACAAAGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654407.1 ENST00000669816.1 |
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| CDS TCA 90 bp | TTTAGCCAGCAGATGTTGGATAAACAGTTAGTTGTCCCAGTTTTGTaGGAAGTGCTGGAGTCAGATGGAGCATCAGCCCAGAATTCCACA | + |
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Preference number: 5 (lower is better) Translates to: FSQQMLDKQLVVPVL*EVLESDGASAQNST Trigger: TGTGGAATTCTGGGCTGATGCTCCATCTGACTCCAGCACTTCTCACAAAACTGGGACAACTAACTGTTTATCCAACATCTGCTGGCTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654407.1 ENST00000657386.1 |
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| CDS TCA 90 bp | TTTAGCCAGCAGATGTTGGATAAACAGTTAGTTGTCCCAGTTTTGTaGGAAGTGCATCTTATGCTCCTGCGATCCATCAGGAGGAGTACA | + |
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Preference number: 5 (lower is better) Translates to: FSQQMLDKQLVVPVL*EVHLMLLRSIRRST Trigger: TGTACTCCTCCTGATGGATCGCAGGAGCATAAGATGCACTTCTCACAAAACTGGGACAACTAACTGTTTATCCAACATCTGCTGGCTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665651.1 |
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| CDS CCA 90 bp | GGTGTACCAGTAAGTAGGATCTTTCTTCCACATGGCCATGAAGAATaGGGGATTGGATATATTTTTGGATGCTGGAGGAACAGTGATTTA | + |
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Preference number: 5 (lower is better) Translates to: GVPVSRIFLPHGHEE*GIGYIFGCWRNSDL Trigger: TAAATCACTGTTCCTCCAGCATCCAAAAATATATCCAATCCCCCATTCTTCATGGCCATGTGGAAGAAAGATCCTACTTACTGGTACACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000653854.1 ENST00000655510.1 |
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| CDS TCA 90 bp | TTTAGCCAGCAGATGTTGGATAAACAGTTAGTTGTCCCAGTTTTGTaGGAAGTGCTGTCACCTTTATTTTTGTCTATATGGAGTTCCATC | + |
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Preference number: 5 (lower is better) Translates to: FSQQMLDKQLVVPVL*EVLSPLFLSIWSSI Trigger: GATGGAACTCCATATAGACAAAAATAAAGGTGACAGCACTTCTCACAAAACTGGGACAACTAACTGTTTATCCAACATCTGCTGGCTAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000669816.1 ENST00000670184.1 |
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| CDS GCA 72 bp | GATCCATCAGGAGGAGTACATGGCTCAGGTGTCTGTTaGAATTCTGAAGGCTGGAGGGTCCATGATCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: DPSGGVHGSGVC*NSEGWRVHDQG Trigger: GCCCTGATCATGGACCCTCCAGCCTTCAGAATTGCAACAGACACCTGAGCCATGTACTCCTCCTGATGGATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000654407.1 ENST00000665651.1 ENST00000669816.1 |
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| CDS CCA 72 bp | GTACATGGCTCAGGTGTCTGTTGCAATTCTGAAGGCTaGAGGGTCCATGATCAGGGCACTGGCAAATTCAGT | + |
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Preference number: 6 (lower is better) Translates to: VHGSGVCCNSEG*RVHDQGTGKFS Trigger: ACTGAATTTGCCAGTGCCCTGATCATGGACCCTCCAGCCTTCAGAATTGCAACAGACACCTGAGCCATGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000654407.1 ENST00000665651.1 ENST00000669816.1 |
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| CDS GCA 72 bp | TTGTCCCAGTTTTGTGAGAAGTGCATCTTATGCTCCTaGGATCCATCAGGAGGAGTACATGGCTCAGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: LSQFCEKCILCS*DPSGGVHGSGV Trigger: GACACCTGAGCCATGTACTCCTCCTGATGGATCGCAGGAGCATAAGATGCACTTCTCACAAAACTGGGACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665651.1 |
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| CDS GCA 72 bp | ATGTATTCTGTGTTTCGGCTTACCATCTTATGCTCCTaGGATCCATCAGGAGGAGTACATGGCTCAGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: MYSVFRLTILCS*DPSGGVHGSGV Trigger: GACACCTGAGCCATGTACTCCTCCTGATGGATCGCAGGAGCATAAGATGGTAAGCCGAAACACAGAATACAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000654407.1 ENST00000657386.1 ENST00000669816.1 ENST00000670184.1 |
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| CDS CCA 72 bp | AGTTGTCCCAGTTTTGTGAGAAGTGCTGGAGTCAGATaGAGCATCAGCCCAGAATTCCACATGAGGAAGTCA | + |
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Preference number: 6 (lower is better) Translates to: SCPSFVRSAGVR*SISPEFHMRKS Trigger: TGACTTCCTCATGTGGAATTCTGGGCTGATGCTCCATCTGACTCCAGCACTTCTCACAAAACTGGGACAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654407.1 ENST00000657386.1 |
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| CDS CCA 72 bp | TGTTTGCCTTTGAGAAAATGGGAAACTATGGTCTGGTaGGTGCCTCCACTCTATCTGAGAAGGAACATGAGG | + |
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Preference number: 6 (lower is better) Translates to: CLPLRKWETMVW*VPPLYLRRNMR Trigger: CCTCATGTTCCTTCTCAGATAGAGTGGAGGCACCCACCAGACCATAGTTTCCCATTTTCTCAAAGGCAAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000671077.1 |
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| CDS GCA 72 bp | TTTGTGATGTATTCTGTGTTTCGGCTTACCATCTTATaGTCCTGCGATCCATCAGGAGGAGTACATGGCTCA | + |
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Preference number: 6 (lower is better) Translates to: FVMYSVFRLTIL*SCDPSGGVHGS Trigger: TGAGCCATGTACTCCTCCTGATGGATCGCAGGAGCATAAGATGGTAAGCCGAAACACAGAATACATCACAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000654407.1 ENST00000657386.1 ENST00000669816.1 ENST00000670184.1 |
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| CDS CCA 72 bp | AGATGTTTGCCTTTGAGAAAATGGGAAACTATGGTCTaGTGGGTGCCTCCACTCTATCTGAGAAGGAACATG | + |
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Preference number: 6 (lower is better) Translates to: RCLPLRKWETMV*WVPPLYLRRNM Trigger: CATGTTCCTTCTCAGATAGAGTGGAGGCACCCACCAGACCATAGTTTCCCATTTTCTCAAAGGCAAACATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000671077.1 |
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| CDS GCA 72 bp | TCAGGGCACTGGCAAATTCAGTATCTGGTGAGACTCTaGTTTCTGATTTATAGATGGCATCCTCTTACTGTG | + |
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Preference number: 6 (lower is better) Translates to: SGHWQIQYLVRL*FLIYRWHPLTV Trigger: CACAGTAAGAGGATGCCATCTATAAATCAGAAAGCAGAGTCTCACCAGATACTGAATTTGCCAGTGCCCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000665651.1 ENST00000669816.1 |
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| CDS TCA 72 bp | CAGATGTTGGATAAACAGTTAGTTGTCCCAGTTTTGTaGGAAGTGACAGTGCCTATAATAGGTAGGTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: QMLDKQLVVPVL*EVTVPIIGRCS Trigger: AGAGCACCTACCTATTATAGGCACTGTCACTTCTCACAAAACTGGGACAACTAACTGTTTATCCAACATCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000433429.2 ENST00000653854.1 ENST00000655510.1 ENST00000671077.1 |
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| CDS CAA 72 bp | TTCTTACTTCCTGCAGCTGATTTAAGCATCCATACCTaGATACCTGTAGGACATAATACAGACAGTAGCCTT | + |
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Preference number: 6 (lower is better) Translates to: FLLPAADLSIHT*IPVGHNTDSSL Trigger: AAGGCTACTGTCTGTATTATGTCCTACAGGTATCAAGGTATGGATGCTTAAATCAGCTGCAGGAAGTAAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671077.1 |
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| CDS CAA 90 bp | TGTCACCTTTATTTTTGTCTATATGGAGTTCCATCTACTTCACCTTaGATGGACTTAATCATAGGGCTTGTAGCTGATGGACATTGTCCT | + |
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Preference number: 6 (lower is better) Translates to: CHLYFCLYGVPSTSP*MDLIIGLVADGHCP Trigger: AGGACAATGTCCATCAGCTACAAGCCCTATGATTAAGTCCATCAAAGGTGAAGTAGATGGAACTCCATATAGACAAAAATAAAGGTGACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000654407.1 ENST00000657386.1 ENST00000669816.1 ENST00000670184.1 |
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| CDS GCA 72 bp | AAAAGAATGAGGGTAGGAGTTAATTGCTATGAATCCTaGATGTTTGTACATCTAAGTCTTTGTGCAAAAGGC | + |
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Preference number: 6 (lower is better) Translates to: KRMRVGVNCYES*MFVHLSLCAKG Trigger: GCCTTTTGCACAAAGACTTAGATGTACAAACATGCAGGATTCATAGCAATTAACTCCTACCCTCATTCTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000671077.1 |
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| CDS CAA 72 bp | TATTTTTGTCTATATGGAGTTCCATCTACTTCACCTTaGATGGACTTAATCATAGGGCTTGTAGCTGATGGA | + |
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Preference number: 6 (lower is better) Translates to: YFCLYGVPSTSP*MDLIIGLVADG Trigger: TCCATCAGCTACAAGCCCTATGATTAAGTCCATCAAAGGTGAAGTAGATGGAACTCCATATAGACAAAAATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000654407.1 ENST00000657386.1 ENST00000669816.1 ENST00000670184.1 |
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| CDS GCA 72 bp | AAGAGAACAGATAAAAGAATGAGGGTAGGAGTTAATTaGTATGAATCCTGCATGTTTGTACATCTAAGTCTT | + |
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Preference number: 6 (lower is better) Translates to: KRTDKRMRVGVN*YESCMFVHLSL Trigger: AAGACTTAGATGTACAAACATGCAGGATTCATAGCAATTAACTCCTACCCTCATTCTTTTATCTGTTCTCTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000671077.1 |
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