Pregenerated sensors for LINC01883 (Homo sapiens)
Ensembl gene IDs: ENSG00000235009Ensembl transcript IDs: ENST00000457385.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GAACCTCCACGCCGAGGCCACCAGAAAGTTCCACATCACATGCTCTaGGGCAGCAGGCTCTTTGAAAGCATGGGTTGGTATTCACAGCAC | + |
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Preference number: 5 (lower is better) Translates to: EPPRRGHQKVPHHML*GSRLFESMGWYSQH Trigger: GTGCTGTGAATACCAACCCATGCTTTCAAAGAGCCTGCTGCCTCAGAGCATGTGATGTGGAACTTTCTGGTGGCCTCGGCGTGGAGGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457385.1 |
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| CDS GCA 90 bp | GTTGAGAACCTCCACGCCGAGGCCACCAGAAAGTTCCACATCACATaGTCTGAGGCAGCAGGCTCTTTGAAAGCATGGGTTGGTATTCAC | + |
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Preference number: 5 (lower is better) Translates to: VENLHAEATRKFHIT*SEAAGSLKAWVGIH Trigger: GTGAATACCAACCCATGCTTTCAAAGAGCCTGCTGCCTCAGAGCATGTGATGTGGAACTTTCTGGTGGCCTCGGCGTGGAGGTTCTCAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457385.1 |
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| CDS TCA 90 bp | CCACCAGAAAGTTCCACATCACATGCTCTGAGGCAGCAGGCTCTTTaGAAGCATGGGTTGGTATTCACAGCACTTGGCATTCATAGTGTA | + |
|
Preference number: 5 (lower is better) Translates to: PPESSTSHALRQQAL*KHGLVFTALGIHSV Trigger: TACACTATGAATGCCAAGTGCTGTGAATACCAACCCATGCTTTCAAAGAGCCTGCTGCCTCAGAGCATGTGATGTGGAACTTTCTGGTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457385.1 |
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| CDS CAA 72 bp | CGCTCCAGACCAACTAAACACAGTGTGCAGCTGAGGTaGAGAACCTCCACGCCGAGGCCACCAGAAAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: RSRPTKHSVQLR*RTSTPRPPESS Trigger: GGAACTTTCTGGTGGCCTCGGCGTGGAGGTTCTCAACCTCAGCTGCACACTGTGTTTAGTTGGTCTGGAGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457385.1 |
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| CDS CCA 72 bp | AGTGTCTTTGTCCAGGGCTCCATTTTCAGTCCCCCATaGCCGCAATCTGCTGAACTTGGGCTCTCAACAGGG | + |
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Preference number: 6 (lower is better) Translates to: SVFVQGSIFSPP*PQSAELGLSTG Trigger: CCCTGTTGAGAGCCCAAGTTCAGCAGATTGCGGCCATGGGGGACTGAAAATGGAGCCCTGGACAAAGACACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000457385.1 |
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| CDS CAA 90 bp | CCTAGATCTCGCTCCAGACCAACTAAACACAGTGTGCAGCTGAGGTaGAGAACCTCCACGCCGAGGCCACCAGAAAGTTCCACATCACAT | + |
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Preference number: 6 (lower is better) Translates to: PRSRSRPTKHSVQLR*RTSTPRPPESSTSH Trigger: ATGTGATGTGGAACTTTCTGGTGGCCTCGGCGTGGAGGTTCTCAACCTCAGCTGCACACTGTGTTTAGTTGGTCTGGAGCGAGATCTAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457385.1 |
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| CDS CCA 72 bp | CTGAACTTGGGCTCTCAACAGGGGGTGCCAGGAGCATaGTTCATCTTCAGTCCTATTTCAAAGCTGGAAGTT | + |
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Preference number: 6 (lower is better) Translates to: LNLGSQQGVPGA*FIFSPISKLEV Trigger: AACTTCCAGCTTTGAAATAGGACTGAAGATGAACCATGCTCCTGGCACCCCCTGTTGAGAGCCCAAGTTCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000457385.1 |
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| CDS TCA 72 bp | AGTTCCACATCACATGCTCTGAGGCAGCAGGCTCTTTaGAAGCATGGGTTGGTATTCACAGCACTTGGCATT | + |
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Preference number: 6 (lower is better) Translates to: SSTSHALRQQAL*KHGLVFTALGI Trigger: AATGCCAAGTGCTGTGAATACCAACCCATGCTTTCAAAGAGCCTGCTGCCTCAGAGCATGTGATGTGGAACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457385.1 |
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| CDS CAA 72 bp | AAGTTCCACATCACATGCTCTGAGGCAGCAGGCTCTTaGAAAGCATGGGTTGGTATTCACAGCACTTGGCAT | + |
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Preference number: 6 (lower is better) Translates to: KFHITCSEAAGS*KAWVGIHSTWH Trigger: ATGCCAAGTGCTGTGAATACCAACCCATGCTTTCAAAGAGCCTGCTGCCTCAGAGCATGTGATGTGGAACTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457385.1 |
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| CDS CAA 72 bp | AGGCTCTTTGAAAGCATGGGTTGGTATTCACAGCACTaGGCATTCATAGTGTACATGGAAAGTCTTGCCTTG | + |
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Preference number: 6 (lower is better) Translates to: RLFESMGWYSQH*AFIVYMESLAL Trigger: CAAGGCAAGACTTTCCATGTACACTATGAATGCCAAGTGCTGTGAATACCAACCCATGCTTTCAAAGAGCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457385.1 |
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