Pregenerated sensors for LINC01880 (Homo sapiens)
Ensembl gene IDs: ENSG00000232002Ensembl transcript IDs: ENST00000446593.1, ENST00000625657.1, ENST00000626932.1, ENST00000661866.1, ENST00000662783.1
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGGAGCCAGTGGTCATCCTGGTCAGGGCCAGCCTGCAGTTACCCCTaGCTGGCAAATAAGACATGGAGGTCGGGAGGGCTGGTTCCCTAC | + |
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Preference number: 5 (lower is better) Translates to: GSQWSSWSGPACSYP*LANKTWRSGGLVPY Trigger: GTAGGGAACCAGCCCTCCCGACCTCCATGTCTTATTTGCCAGGCAGGGGTAACTGCAGGCTGGCCCTGACCAGGATGACCACTGGCTCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CCA 90 bp | GTCCAATGCAGGCCACGCACGAAATGCATCCACAGTGGGAGCCAGTaGTCATCCTGGTCAGGGCCAGCCTGCAGTTACCCCTGCCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: VQCRPRTKCIHSGSQ*SSWSGPACSYPCLA Trigger: TGCCAGGCAGGGGTAACTGCAGGCTGGCCCTGACCAGGATGACCACTGGCTCCCACTGTGGATGCATTTCGTGCGTGGCCTGCATTGGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS TCA 90 bp | GTGTCCTGGAGCTTCCCCTGGACCCTGGACACCCCAGCACATGGGTaGGCCGATGTCCAATGCAGGCCACGCACGAAATGCATCCACAGT | + |
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Preference number: 5 (lower is better) Translates to: VSWSFPWTLDTPAHG*ADVQCRPRTKCIHS Trigger: ACTGTGGATGCATTTCGTGCGTGGCCTGCATTGGACATCGGCTCACCCATGTGCTGGGGTGTCCAGGGTCCAGGGGAAGCTCCAGGACAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CCA 90 bp | TGGTCAGGGCCAGCCTGCAGTTACCCCTGCCTGGCAAATAAGACATaGAGGTCGGGAGGGCTGGTTCCCTACTCCTGGTCATGTCACGGG | + |
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Preference number: 5 (lower is better) Translates to: WSGPACSYPCLANKT*RSGGLVPYSWSCHG Trigger: CCCGTGACATGACCAGGAGTAGGGAACCAGCCCTCCCGACCTCCATGTCTTATTTGCCAGGCAGGGGTAACTGCAGGCTGGCCCTGACCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CCA 90 bp | GCCAGTGGTCATCCTGGTCAGGGCCAGCCTGCAGTTACCCCTGCCTaGCAAATAAGACATGGAGGTCGGGAGGGCTGGTTCCCTACTCCT | + |
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Preference number: 5 (lower is better) Translates to: ASGHPGQGQPAVTPA*QIRHGGREGWFPTP Trigger: AGGAGTAGGGAACCAGCCCTCCCGACCTCCATGTCTTATTTGCCAGGCAGGGGTAACTGCAGGCTGGCCCTGACCAGGATGACCACTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CCA 90 bp | GTGAGCCGATGTCCAATGCAGGCCACGCACGAAATGCATCCACAGTaGGAGCCAGTGGTCATCCTGGTCAGGGCCAGCCTGCAGTTACCC | + |
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Preference number: 5 (lower is better) Translates to: VSRCPMQATHEMHPQ*EPVVILVRASLQLP Trigger: GGGTAACTGCAGGCTGGCCCTGACCAGGATGACCACTGGCTCCCACTGTGGATGCATTTCGTGCGTGGCCTGCATTGGACATCGGCTCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CCA 90 bp | TGCTCTCCTGATCCTCAAATGTGTCCTGGAGCTTCCCCTGGACCCTaGACACCCCAGCACATGGGTGAGCCGATGTCCAATGCAGGCCAC | + |
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Preference number: 5 (lower is better) Translates to: CSPDPQMCPGASPGP*TPQHMGEPMSNAGH Trigger: GTGGCCTGCATTGGACATCGGCTCACCCATGTGCTGGGGTGTCCAGGGTCCAGGGGAAGCTCCAGGACACATTTGAGGATCAGGAGAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS GCA 90 bp | TCCCGGGTCGTGGTCTCCCTGACAAGAGTCCTGCACTATGCAGGTTaGTCTCCTGATCCTCAAATGTGTCCTGGAGCTTCCCCTGGACCC | + |
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Preference number: 5 (lower is better) Translates to: SRVVVSLTRVLHYAG*SPDPQMCPGASPGP Trigger: GGGTCCAGGGGAAGCTCCAGGACACATTTGAGGATCAGGAGAGCAACCTGCATAGTGCAGGACTCTTGTCAGGGAGACCACGACCCGGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CCA 90 bp | AGGCCACGCACGAAATGCATCCACAGTGGGAGCCAGTGGTCATCCTaGTCAGGGCCAGCCTGCAGTTACCCCTGCCTGGCAAATAAGACA | + |
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Preference number: 5 (lower is better) Translates to: RPRTKCIHSGSQWSS*SGPACSYPCLANKT Trigger: TGTCTTATTTGCCAGGCAGGGGTAACTGCAGGCTGGCCCTGACCAGGATGACCACTGGCTCCCACTGTGGATGCATTTCGTGCGTGGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CCA 90 bp | AAATGTGTCCTGGAGCTTCCCCTGGACCCTGGACACCCCAGCACATaGGTGAGCCGATGTCCAATGCAGGCCACGCACGAAATGCATCCA | + |
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Preference number: 5 (lower is better) Translates to: KCVLELPLDPGHPST*VSRCPMQATHEMHP Trigger: TGGATGCATTTCGTGCGTGGCCTGCATTGGACATCGGCTCACCCATGTGCTGGGGTGTCCAGGGTCCAGGGGAAGCTCCAGGACACATTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS TCA 90 bp | GGGCTGGTTCCCTACTCCTGGTCATGTCACGGGACATTCTGGAACTaGGGCTCCATGTCTAGAAGCAGTGCCTGCTGGTGTCCCTGTGAG | + |
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Preference number: 5 (lower is better) Translates to: GLVPYSWSCHGTFWN*GSMSRSSACWCPCE Trigger: CTCACAGGGACACCAGCAGGCACTGCTTCTAGACATGGAGCCTCAGTTCCAGAATGTCCCGTGACATGACCAGGAGTAGGGAACCAGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS TCA 90 bp | CGTGGTCTCCCTGACAAGAGTCCTGCACTATGCAGGTTGCTCTCCTaGTCCTCAAATGTGTCCTGGAGCTTCCCCTGGACCCTGGACACC | + |
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Preference number: 5 (lower is better) Translates to: RGLPDKSPALCRLLS*SSNVSWSFPWTLDT Trigger: GGTGTCCAGGGTCCAGGGGAAGCTCCAGGACACATTTGAGGATCAGGAGAGCAACCTGCATAGTGCAGGACTCTTGTCAGGGAGACCACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS GCA 90 bp | TTTATTTTCATTTCTCTAAGATCAGAAGCAGCAGAGGGCTGCCTGTaGCCACCAGAGCCGTTCACGATGGTGCCAGGAATCCTAGTCGGC | + |
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Preference number: 5 (lower is better) Translates to: FIFISLRSEAAEGCL*PPEPFTMVPGILVG Trigger: GCCGACTAGGATTCCTGGCACCATCGTGAACGGCTCTGGTGGGCACAGGCAGCCCTCTGCTGCTTCTGATCTTAGAGAAATGAAAATAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661866.1 |
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| CDS GCA 90 bp | GCTGACTTTATTTTCATTTCTCTAAGATCAGAAGCAGCAGAGGGCTaGCTGTGCCCACCAGAGCCGTTCACGATGGTGCCAGGAATCCTA | + |
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Preference number: 5 (lower is better) Translates to: ADFIFISLRSEAAEG*LCPPEPFTMVPGIL Trigger: TAGGATTCCTGGCACCATCGTGAACGGCTCTGGTGGGCACAGGCAGCCCTCTGCTGCTTCTGATCTTAGAGAAATGAAAATAAAGTCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661866.1 |
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| CDS CCA 90 bp | CATCTGATTTCAAGACTTCCTCTAAAGCAATCGCATTTGGTACTGTaGTATTGGCCTCAGATAGACACTCAGACCAAAGAGACAAAACAG | + |
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Preference number: 5 (lower is better) Translates to: HLISRLPLKQSHLVL*YWPQIDTQTKETKQ Trigger: CTGTTTTGTCTCTTTGGTCTGAGTGTCTATCTGAGGCCAATACCACAGTACCAAATGCGATTGCTTTAGAGGAAGTCTTGAAATCAGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000446593.1 ENST00000625657.1 ENST00000626932.1 ENST00000661866.1 ENST00000662783.1 |
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| CDS CCA 72 bp | CTGGAGCTTCCCCTGGACCCTGGACACCCCAGCACATaGGTGAGCCGATGTCCAATGCAGGCCACGCACGAA | + |
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Preference number: 6 (lower is better) Translates to: LELPLDPGHPST*VSRCPMQATHE Trigger: TTCGTGCGTGGCCTGCATTGGACATCGGCTCACCCATGTGCTGGGGTGTCCAGGGTCCAGGGGAAGCTCCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CCA 72 bp | CCAGCAGCCCACATCAGAGCCTGGGTGCTGACGTCCTaGCAGGGGGAACTGGAGGCGCCAAAAGGAAATGCC | + |
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Preference number: 6 (lower is better) Translates to: PAAHIRAWVLTS*QGELEAPKGNA Trigger: GGCATTTCCTTTTGGCGCCTCCAGTTCCCCCTGCCAGGACGTCAGCACCCAGGCTCTGATGTGGGCTGCTGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CCA 72 bp | AGGCCACGCACGAAATGCATCCACAGTGGGAGCCAGTaGTCATCCTGGTCAGGGCCAGCCTGCAGTTACCCC | + |
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Preference number: 6 (lower is better) Translates to: RPRTKCIHSGSQ*SSWSGPACSYP Trigger: GGGGTAACTGCAGGCTGGCCCTGACCAGGATGACCACTGGCTCCCACTGTGGATGCATTTCGTGCGTGGCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS GCA 72 bp | TGGTCATCCTGGTCAGGGCCAGCCTGCAGTTACCCCTaGCTGGCAAATAAGACATGGAGGTCGGGAGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: WSSWSGPACSYP*LANKTWRSGGL Trigger: CAGCCCTCCCGACCTCCATGTCTTATTTGCCAGGCAGGGGTAACTGCAGGCTGGCCCTGACCAGGATGACCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CCA 72 bp | CATCCTGGTCAGGGCCAGCCTGCAGTTACCCCTGCCTaGCAAATAAGACATGGAGGTCGGGAGGGCTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: HPGQGQPAVTPA*QIRHGGREGWF Trigger: GAACCAGCCCTCCCGACCTCCATGTCTTATTTGCCAGGCAGGGGTAACTGCAGGCTGGCCCTGACCAGGATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CCA 72 bp | TGTCCAATGCAGGCCACGCACGAAATGCATCCACAGTaGGAGCCAGTGGTCATCCTGGTCAGGGCCAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: CPMQATHEMHPQ*EPVVILVRASL Trigger: CAGGCTGGCCCTGACCAGGATGACCACTGGCTCCCACTGTGGATGCATTTCGTGCGTGGCCTGCATTGGACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CCA 72 bp | CCAGCCTGCAGTTACCCCTGCCTGGCAAATAAGACATaGAGGTCGGGAGGGCTGGTTCCCTACTCCTGGTCA | + |
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Preference number: 6 (lower is better) Translates to: PACSYPCLANKT*RSGGLVPYSWS Trigger: TGACCAGGAGTAGGGAACCAGCCCTCCCGACCTCCATGTCTTATTTGCCAGGCAGGGGTAACTGCAGGCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CAA 72 bp | TGTCTAGAAGCAGTGCCTGCTGGTGTCCCTGTGAGCTaGGGGGCCCATCTTCCAGGCCAGTCCTTGGTTCCT | + |
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Preference number: 6 (lower is better) Translates to: CLEAVPAGVPVS*GAHLPGQSLVP Trigger: AGGAACCAAGGACTGGCCTGGAAGATGGGCCCCCAAGCTCACAGGGACACCAGCAGGCACTGCTTCTAGACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CCA 72 bp | GATCCTCAAATGTGTCCTGGAGCTTCCCCTGGACCCTaGACACCCCAGCACATGGGTGAGCCGATGTCCAAT | + |
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Preference number: 6 (lower is better) Translates to: DPQMCPGASPGP*TPQHMGEPMSN Trigger: ATTGGACATCGGCTCACCCATGTGCTGGGGTGTCCAGGGTCCAGGGGAAGCTCCAGGACACATTTGAGGATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS TCA 72 bp | CCCTACTCCTGGTCATGTCACGGGACATTCTGGAACTaGGGCTCCATGTCTAGAAGCAGTGCCTGCTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: PYSWSCHGTFWN*GSMSRSSACWC Trigger: ACACCAGCAGGCACTGCTTCTAGACATGGAGCCTCAGTTCCAGAATGTCCCGTGACATGACCAGGAGTAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS TCA 72 bp | CCTGACAAGAGTCCTGCACTATGCAGGTTGCTCTCCTaGTCCTCAAATGTGTCCTGGAGCTTCCCCTGGACC | + |
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Preference number: 6 (lower is better) Translates to: PDKSPALCRLLS*SSNVSWSFPWT Trigger: GGTCCAGGGGAAGCTCCAGGACACATTTGAGGATCAGGAGAGCAACCTGCATAGTGCAGGACTCTTGTCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS GCA 72 bp | ATTTCTCTAAGATCAGAAGCAGCAGAGGGCTGCCTGTaGCCACCAGAGCCGTTCACGATGGTGCCAGGAATC | + |
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Preference number: 6 (lower is better) Translates to: ISLRSEAAEGCL*PPEPFTMVPGI Trigger: GATTCCTGGCACCATCGTGAACGGCTCTGGTGGGCACAGGCAGCCCTCTGCTGCTTCTGATCTTAGAGAAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661866.1 |
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| CDS GCA 72 bp | GTGGTCTCCCTGACAAGAGTCCTGCACTATGCAGGTTaGTCTCCTGATCCTCAAATGTGTCCTGGAGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: VVSLTRVLHYAG*SPDPQMCPGAS Trigger: GGAAGCTCCAGGACACATTTGAGGATCAGGAGAGCAACCTGCATAGTGCAGGACTCTTGTCAGGGAGACCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CAA 90 bp | GCACTCTCAGACAGTGCTGTGATGAGACCCTTGTCACAGGTATTTTaGGGGACTCTGTGTCTTCTAGGAAAGGCTCCCGGGTCGTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: ALSDSAVMRPLSQVF*GTLCLLGKAPGSWS Trigger: AGACCACGACCCGGGAGCCTTTCCTAGAAGACACAGAGTCCCCAAAAATACCTGTGACAAGGGTCTCATCACAGCACTGTCTGAGAGTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CAA 72 bp | GACAGTGCTGTGATGAGACCCTTGTCACAGGTATTTTaGGGGACTCTGTGTCTTCTAGGAAAGGCTCCCGGG | + |
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Preference number: 6 (lower is better) Translates to: DSAVMRPLSQVF*GTLCLLGKAPG Trigger: CCCGGGAGCCTTTCCTAGAAGACACAGAGTCCCCAAAAATACCTGTGACAAGGGTCTCATCACAGCACTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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| CDS CAA 90 bp | ATGCTCCCTCATCTGATTTCAAGACTTCCTCTAAAGCAATCGCATTaGGTACTGTGGTATTGGCCTCAGATAGACACTCAGACCAAAGAG | + |
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Preference number: 6 (lower is better) Translates to: MLPHLISRLPLKQSH*VLWYWPQIDTQTKE Trigger: CTCTTTGGTCTGAGTGTCTATCTGAGGCCAATACCACAGTACCAAATGCGATTGCTTTAGAGGAAGTCTTGAAATCAGATGAGGGAGCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000446593.1 ENST00000625657.1 ENST00000626932.1 |
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| CDS CAA 72 bp | CATCTGATTTCAAGACTTCCTCTAAAGCAATCGCATTaGGTACTGTGGTATTGGCCTCAGATAGACACTCAG | + |
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Preference number: 6 (lower is better) Translates to: HLISRLPLKQSH*VLWYWPQIDTQ Trigger: CTGAGTGTCTATCTGAGGCCAATACCACAGTACCAAATGCGATTGCTTTAGAGGAAGTCTTGAAATCAGATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000446593.1 ENST00000625657.1 ENST00000626932.1 ENST00000661866.1 ENST00000662783.1 |
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| CDS CAA 90 bp | CATTTCTCTCATCTGATTTCAAGACTTCCTCTAAAGCAATCGCATTaGGTACTGTGGTATTGGCCTCAGATAGACACTCAGACCAAAGAG | + |
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Preference number: 6 (lower is better) Translates to: HFSHLISRLPLKQSH*VLWYWPQIDTQTKE Trigger: CTCTTTGGTCTGAGTGTCTATCTGAGGCCAATACCACAGTACCAAATGCGATTGCTTTAGAGGAAGTCTTGAAATCAGATGAGAGAAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662783.1 |
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| CDS CAA 72 bp | CTCACCCTGAAATCAATGCGACACATCTTTGGACATTaGAGACTCTATGCCACATACCAAGTCTCTAAAATC | + |
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Preference number: 6 (lower is better) Translates to: LTLKSMRHIFGH*RLYATYQVSKI Trigger: GATTTTAGAGACTTGGTATGTGGCATAGAGTCTCAAATGTCCAAAGATGTGTCGCATTGATTTCAGGGTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661866.1 ENST00000662783.1 |
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