Pregenerated sensors for LINC01879 (Homo sapiens)
Ensembl gene IDs: ENSG00000276397Ensembl transcript IDs: ENST00000611889.1, ENST00000616078.1, ENST00000656854.1
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AAGGCCAACTTACATGAGCGGAGTGTCCTTGCGGTGCCTGAGCTGTaGTCAACTGAAGGTGTCCACGACATACTGAAGGAGCTCTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: KANLHERSVLAVPEL*STEGVHDILKELLL Trigger: CAACAAGAGCTCCTTCAGTATGTCGTGGACACCTTCAGTTGAGCACAGCTCAGGCACCGCAAGGACACTCCGCTCATGTAAGTTGGCCTT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS TCA 90 bp | ACATTTGTTATTAGATGGGGTCTCCTCCCTGGCAAGAGGCAAGTCTaGGAACCGGCAAGTCCCAAGCACTTCCTCACGACTGCTGGTGTT | + |
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Preference number: 5 (lower is better) Translates to: TFVIRWGLLPGKRQV*EPASPKHFLTTAGV Trigger: AACACCAGCAGTCGTGAGGAAGTGCTTGGGACTTGCCGGTTCTCAGACTTGCCTCTTGCCAGGGAGGAGACCCCATCTAATAACAAATGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611889.1 |
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| CDS TCA 90 bp | TCAGTCTTCTGTCTCTCCTCGGACGGGACCCAAGCAGCCTCTTTCTaGTGGTCTCTTGAAAGATCACCCATGTATCTCCTGAGGAGTAAG | + |
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Preference number: 5 (lower is better) Translates to: SVFCLSSDGTQAASF*WSLERSPMYLLRSK Trigger: CTTACTCCTCAGGAGATACATGGGTGATCTTTCAAGAGACCATCAGAAAGAGGCTGCTTGGGTCCCGTCCGAGGAGAGACAGAAGACTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000656854.1 |
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| CDS TCA 90 bp | TCCAGTGTGGATATTCCAGGTAGCGGCAGCAGGTGGTGCTTTATGTaGATGAGCAGCTTTATCCAGCGTTTGTGTCTGATGCATCCGAAG | + |
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Preference number: 5 (lower is better) Translates to: SSVDIPGSGSRWCFM*MSSFIQRLCLMHPK Trigger: CTTCGGATGCATCAGACACAAACGCTGGATAAAGCTGCTCATTCACATAAAGCACCACCTGCTGCCGCTACCTGGAATATCCACACTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611889.1 |
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| CDS TCA 90 bp | GTATTCCAACACCTCGTACAACGGGCTGATCACAGAGAGCGCTGTTaGCATTCGGGACAAACAGTGTCACAGGCTGTGTTTTACTTGCTC | + |
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Preference number: 5 (lower is better) Translates to: VFQHLVQRADHRERC*HSGQTVSQAVFYLL Trigger: GAGCAAGTAAAACACAGCCTGTGACACTGTTTGTCCCGAATGTCAACAGCGCTCTCTGTGATCAGCCCGTTGTACGAGGTGTTGGAATAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS TCA 90 bp | TTGCGGTGCCTGAGCTGTGCTCAACTGAAGGTGTCCACGACATACTaGAGGAGCTCTTGTTGGTTTCTAAGGAAATGGAATTCAGAGCAC | + |
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Preference number: 5 (lower is better) Translates to: LRCLSCAQLKVSTTY*RSSCWFLRKWNSEH Trigger: GTGCTCTGAATTCCATTTCCTTAGAAACCAACAAGAGCTCCTTCAGTATGTCGTGGACACCTTCAGTTGAGCACAGCTCAGGCACCGCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS TCA 90 bp | TTCCGTTTGCGTTGTTCATGTATTCCAACACCTCGTACAACGGGCTaGTCACAGAGAGCGCTGTTGACATTCGGGACAAACAGTGTCACA | + |
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Preference number: 5 (lower is better) Translates to: FRLRCSCIPTPRTTG*SQRALLTFGTNSVT Trigger: TGTGACACTGTTTGTCCCGAATGTCAACAGCGCTCTCTGTGATCAGCCCGTTGTACGAGGTGTTGGAATACATGAACAACGCAAACGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS TCA 90 bp | AAAATTACTCTTGCTGAGAAAGTCTGTGCCCAGGGCTGTGACGACTaGTTGAACGTAGCTGCTTATGAGGCTGTGGCTGACCTAAGGAAT | + |
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Preference number: 5 (lower is better) Translates to: KITLAEKVCAQGCDD*LNVAAYEAVADLRN Trigger: ATTCCTTAGGTCAGCCACAGCCTCATAAGCAGCTACGTTCAATCAGTCGTCACAGCCCTGGGCACAGACTTTCTCAGCAAGAGTAATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS GCA 90 bp | AGTAGGGCTGGCAAGACGTACTACTTCCCAATGTTTTGTTATTTGTaGCACAGCATCAGGGGCCCTTCATTCAGGAAACGTCTCTTGTGT | + |
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Preference number: 5 (lower is better) Translates to: SRAGKTYYFPMFCYL*HSIRGPSFRKRLLC Trigger: ACACAAGAGACGTTTCCTGAATGAAGGGCCCCTGATGCTGTGGCACAAATAACAAAACATTGGGAAGTAGTACGTCTTGCCAGCCCTACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS TCA 90 bp | TCTCCAACGATTACATTCCCAAAACAATATAAACAATCTCAGAATTaGGGAGTGTTGCCTTCATTTAACATCAAGCACTCATGGTTTTCC | + |
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Preference number: 5 (lower is better) Translates to: SPTITFPKQYKQSQN*GVLPSFNIKHSWFS Trigger: GGAAAACCATGAGTGCTTGATGTTAAATGAAGGCAACACTCCTCAATTCTGAGATTGTTTATATTGTTTTGGGAATGTAATCGTTGGAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000611889.1 |
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| CDS GCA 90 bp | TTACATTCCCAAAACAATATAAACAATCTCAGAATTGAGGAGTGTTaGCTTCATTTAACATCAAGCACTCATGGTTTTCCAACTGTGGCT | + |
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Preference number: 5 (lower is better) Translates to: LHSQNNINNLRIEEC*LHLTSSTHGFPTVA Trigger: AGCCACAGTTGGAAAACCATGAGTGCTTGATGTTAAATGAAGGCAACACTCCTCAATTCTGAGATTGTTTATATTGTTTTGGGAATGTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000611889.1 |
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| CDS TCA 72 bp | CAGAGGGAAGGAAGGGCCACACATTCCCCAGCACCTTaGGCCTGGGTGCCGGCGGGCAGTGTGGATGAGGAC | + |
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Preference number: 6 (lower is better) Translates to: QREGRATHSPAP*AWVPAGSVDED Trigger: GTCCTCATCCACACTGCCCGCCGGCACCCAGGCTCAAGGTGCTGGGGAATGTGTGGCCCTTCCTTCCCTCTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656854.1 |
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| CDS GCA 72 bp | CTAAGGCCAACTTACATGAGCGGAGTGTCCTTGCGGTaGCTGAGCTGTGCTCAACTGAAGGTGTCCACGACA | + |
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Preference number: 6 (lower is better) Translates to: LRPTYMSGVSLR*LSCAQLKVSTT Trigger: TGTCGTGGACACCTTCAGTTGAGCACAGCTCAGGCACCGCAAGGACACTCCGCTCATGTAAGTTGGCCTTAG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS GCA 72 bp | TTACATGAGCGGAGTGTCCTTGCGGTGCCTGAGCTGTaGTCAACTGAAGGTGTCCACGACATACTGAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: LHERSVLAVPEL*STEGVHDILKE Trigger: CTCCTTCAGTATGTCGTGGACACCTTCAGTTGAGCACAGCTCAGGCACCGCAAGGACACTCCGCTCATGTAA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS CAA 72 bp | AACCTACTAAGGCCAACTTACATGAGCGGAGTGTCCTaGCGGTGCCTGAGCTGTGCTCAACTGAAGGTGTCC | + |
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Preference number: 6 (lower is better) Translates to: NLLRPTYMSGVS*RCLSCAQLKVS Trigger: GGACACCTTCAGTTGAGCACAGCTCAGGCACCGCAAGGACACTCCGCTCATGTAAGTTGGCCTTAGTAGGTT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS TCA 72 bp | CACCTCGTACAACGGGCTGATCACAGAGAGCGCTGTTaGCATTCGGGACAAACAGTGTCACAGGCTGTGTTT | + |
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Preference number: 6 (lower is better) Translates to: HLVQRADHRERC*HSGQTVSQAVF Trigger: AAACACAGCCTGTGACACTGTTTGTCCCGAATGTCAACAGCGCTCTCTGTGATCAGCCCGTTGTACGAGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS CAA 90 bp | TGGAAGAAAAACCTACTAAGGCCAACTTACATGAGCGGAGTGTCCTaGCGGTGCCTGAGCTGTGCTCAACTGAAGGTGTCCACGACATAC | + |
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Preference number: 6 (lower is better) Translates to: WKKNLLRPTYMSGVS*RCLSCAQLKVSTTY Trigger: GTATGTCGTGGACACCTTCAGTTGAGCACAGCTCAGGCACCGCAAGGACACTCCGCTCATGTAAGTTGGCCTTAGTAGGTTTTTCTTCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS GCA 72 bp | CCTGAGTCAGGAGCACCCCAGACATCACACTCTACCTaGCCATCCTTTCTTACTAGAGGTAACATCTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: PESGAPQTSHST*PSFLTRGNIWF Trigger: GAACCAGATGTTACCTCTAGTAAGAAAGGATGGGCAGGTAGAGTGTGATGTCTGGGGTGCTCCTGACTCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS TCA 72 bp | CGTTGTTCATGTATTCCAACACCTCGTACAACGGGCTaGTCACAGAGAGCGCTGTTGACATTCGGGACAAAC | + |
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Preference number: 6 (lower is better) Translates to: RCSCIPTPRTTG*SQRALLTFGTN Trigger: GTTTGTCCCGAATGTCAACAGCGCTCTCTGTGATCAGCCCGTTGTACGAGGTGTTGGAATACATGAACAACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS CCA 72 bp | AACCTCTGTTTCCACCAAGCTTCGAGTTATCCAGTGTaGATATTCCAGGTAGCGGCAGCAGGTGGTGCTTTA | + |
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Preference number: 6 (lower is better) Translates to: NLCFHQASSYPV*IFQVAAAGGAL Trigger: TAAAGCACCACCTGCTGCCGCTACCTGGAATATCCACACTGGATAACTCGAAGCTTGGTGGAAACAGAGGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611889.1 |
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| CDS CAA 90 bp | CTGTGCTCAACTGAAGGTGTCCACGACATACTGAAGGAGCTCTTGTaGGTTTCTAAGGAAATGGAATTCAGAGCACCCATCTTCCATCCC | + |
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Preference number: 6 (lower is better) Translates to: LCSTEGVHDILKELL*VSKEMEFRAPIFHP Trigger: GGGATGGAAGATGGGTGCTCTGAATTCCATTTCCTTAGAAACCAACAAGAGCTCCTTCAGTATGTCGTGGACACCTTCAGTTGAGCACAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS CAA 90 bp | AGGTCCATGAAAGATCTGGTTCTGGACTTCATTAGGGAAAGACATTaGTTATTAGATGGGGTCTCCTCCCTGGCAAGAGGCAAGTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: RSMKDLVLDFIRERH*LLDGVSSLARGKSE Trigger: CTCAGACTTGCCTCTTGCCAGGGAGGAGACCCCATCTAATAACAAATGTCTTTCCCTAATGAAGTCCAGAACCAGATCTTTCATGGACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611889.1 |
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| CDS GCA 72 bp | GGCAAGACGTACTACTTCCCAATGTTTTGTTATTTGTaGCACAGCATCAGGGGCCCTTCATTCAGGAAACGT | + |
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Preference number: 6 (lower is better) Translates to: GKTYYFPMFCYL*HSIRGPSFRKR Trigger: ACGTTTCCTGAATGAAGGGCCCCTGATGCTGTGGCACAAATAACAAAACATTGGGAAGTAGTACGTCTTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS TCA 72 bp | CTGAGCTGTGCTCAACTGAAGGTGTCCACGACATACTaGAGGAGCTCTTGTTGGTTTCTAAGGAAATGGAAT | + |
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Preference number: 6 (lower is better) Translates to: LSCAQLKVSTTY*RSSCWFLRKWN Trigger: ATTCCATTTCCTTAGAAACCAACAAGAGCTCCTTCAGTATGTCGTGGACACCTTCAGTTGAGCACAGCTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS CAA 72 bp | AAAGACAGAAATGAGAGACGAGATATTCCGTTTGCGTaGTTCATGTATTCCAACACCTCGTACAACGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: KDRNERRDIPFA*FMYSNTSYNGL Trigger: CAGCCCGTTGTACGAGGTGTTGGAATACATGAACAACGCAAACGGAATATCTCGTCTCTCATTTCTGTCTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS CAA 90 bp | CCAATGATTAAAGACAGAAATGAGAGACGAGATATTCCGTTTGCGTaGTTCATGTATTCCAACACCTCGTACAACGGGCTGATCACAGAG | + |
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Preference number: 6 (lower is better) Translates to: PMIKDRNERRDIPFA*FMYSNTSYNGLITE Trigger: CTCTGTGATCAGCCCGTTGTACGAGGTGTTGGAATACATGAACAACGCAAACGGAATATCTCGTCTCTCATTTCTGTCTTTAATCATTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS CAA 72 bp | TTTATAAAGTCCTTTAATATCCTGCAGAAAAGGCTGTaGCGTCAGATAATAGAGTACACCACGGCTCAGTCT | + |
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Preference number: 6 (lower is better) Translates to: FIKSFNILQKRL*RQIIEYTTAQS Trigger: AGACTGAGCCGTGGTGTACTCTATTATCTGACGCAACAGCCTTTTCTGCAGGATATTAAAGGACTTTATAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000656854.1 |
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| CDS TCA 72 bp | GGACAAACAGTGTCACAGGCTGTGTTTTACTTGCTCTaGATAGAAATTCACTCATGGAAGAAAAACCTACTA | + |
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Preference number: 6 (lower is better) Translates to: GQTVSQAVFYLL*IEIHSWKKNLL Trigger: TAGTAGGTTTTTCTTCCATGAGTGAATTTCTATTCAGAGCAAGTAAAACACAGCCTGTGACACTGTTTGTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000611889.1 ENST00000616078.1 |
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| CDS GCA 72 bp | CAAAACAATATAAACAATCTCAGAATTGAGGAGTGTTaGCTTCATTTAACATCAAGCACTCATGGTTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: QNNINNLRIEEC*LHLTSSTHGFP Trigger: TGGAAAACCATGAGTGCTTGATGTTAAATGAAGGCAACACTCCTCAATTCTGAGATTGTTTATATTGTTTTG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000611889.1 |
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