Pregenerated sensors for LINC01875 (Homo sapiens)
Ensembl gene IDs: ENSG00000225942Ensembl transcript IDs: ENST00000454477.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCCTCTGGGCTGGCTGGGCTCCGCATCAGGAACTTGGCAAGCACATaGTCACAGCACCTGCCACGGGCCCGTCCCTGCCATGGGCACAGC | + |
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Preference number: 5 (lower is better) Translates to: PSGLAGLRIRNLAST*SQHLPRARPCHGHS Trigger: GCTGTGCCCATGGCAGGGACGGGCCCGTGGCAGGTGCTGTGAGCATGTGCTTGCCAAGTTCCTGATGCGGAGCCCAGCCAGCCCAGAGGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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| CDS CCA 90 bp | CGCTGGTGCTCCCTGGAGTTCGGTGGGAGGCTCCACTTCCTGCCATaGCCTCTCCTGCCGGCTGGTGTCACTCAGCTCCACAATCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: RWCSLEFGGRLHFLP*PLLPAGVTQLHNPQ Trigger: CTGAGGATTGTGGAGCTGAGTGACACCAGCCGGCAGGAGAGGCCATGGCAGGAAGTGGAGCCTCCCACCGAACTCCAGGGAGCACCAGCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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| CDS GCA 90 bp | TCAGTCGCTGGTGCTCCCTGGAGTTCGGTGGGAGGCTCCACTTCCTaGCATGGCCTCTCCTGCCGGCTGGTGTCACTCAGCTCCACAATC | + |
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Preference number: 5 (lower is better) Translates to: SVAGAPWSSVGGSTS*HGLSCRLVSLSSTI Trigger: GATTGTGGAGCTGAGTGACACCAGCCGGCAGGAGAGGCCATGGCAGGAAGTGGAGCCTCCCACCGAACTCCAGGGAGCACCAGCGACTGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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| CDS CCA 90 bp | GGCAAGCACATGCTCACAGCACCTGCCACGGGCCCGTCCCTGCCATaGGCACAGCAAGGGAAATGTCACTGCTTCTGCCGTAAAGAGTGT | + |
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Preference number: 5 (lower is better) Translates to: GKHMLTAPATGPSLP*AQQGKCHCFCRKEC Trigger: ACACTCTTTACGGCAGAAGCAGTGACATTTCCCTTGCTGTGCCCATGGCAGGGACGGGCCCGTGGCAGGTGCTGTGAGCATGTGCTTGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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| CDS CCA 90 bp | GGAACTTGGCATGAGCTGCGGCTCCAAGAAGCAGTGACAAGAATGTaGCCCTCTGGGCTGGCTGGGCTCCGCATCAGGAACTTGGCAAGC | + |
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Preference number: 5 (lower is better) Translates to: GTWHELRLQEAVTRM*PSGLAGLRIRNLAS Trigger: GCTTGCCAAGTTCCTGATGCGGAGCCCAGCCAGCCCAGAGGGCCACATTCTTGTCACTGCTTCTTGGAGCCGCAGCTCATGCCAAGTTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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| CDS GCA 90 bp | AACTTGGCAAGCACATGCTCACAGCACCTGCCACGGGCCCGTCCCTaGCATGGGCACAGCAAGGGAAATGTCACTGCTTCTGCCGTAAAG | + |
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Preference number: 5 (lower is better) Translates to: NLASTCSQHLPRARP*HGHSKGNVTASAVK Trigger: CTTTACGGCAGAAGCAGTGACATTTCCCTTGCTGTGCCCATGGCAGGGACGGGCCCGTGGCAGGTGCTGTGAGCATGTGCTTGCCAAGTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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| CDS CCA 90 bp | GGCTGGTGTCACTCAGCTCCACAATCCTCAGTGTCATCAGGAGCCTaGAGGTCCAGCTTCACTCCTGCCGTGGAGGCTGTAGCACATCTG | + |
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Preference number: 5 (lower is better) Translates to: GWCHSAPQSSVSSGA*RSSFTPAVEAVAHL Trigger: CAGATGTGCTACAGCCTCCACGGCAGGAGTGAAGCTGGACCTCCAGGCTCCTGATGACACTGAGGATTGTGGAGCTGAGTGACACCAGCC 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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| CDS TCA 90 bp | CCTGAACATCTGAGGCAGCACAAAGTTAGAGCCCAGAGAGGGGTGTaGGGAACTTGGCATGAGCTGCGGCTCCAAGAAGCAGTGACAAGA | + |
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Preference number: 5 (lower is better) Translates to: PEHLRQHKVRAQRGV*GTWHELRLQEAVTR Trigger: TCTTGTCACTGCTTCTTGGAGCCGCAGCTCATGCCAAGTTCCTCACACCCCTCTCTGGGCTCTAACTTTGTGCTGCCTCAGATGTTCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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| CDS GCA 90 bp | ACAATCCTCAGTGTCATCAGGAGCCTGGAGGTCCAGCTTCACTCCTaGCGTGGAGGCTGTAGCACATCTGAAATCTCTTCCAACTGGACT | + |
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Preference number: 5 (lower is better) Translates to: TILSVIRSLEVQLHS*RGGCSTSEISSNWT Trigger: AGTCCAGTTGGAAGAGATTTCAGATGTGCTACAGCCTCCACGGCAGGAGTGAAGCTGGACCTCCAGGCTCCTGATGACACTGAGGATTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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| CDS GCA 72 bp | CCACAGCCGCCCGCCATGTGGCCTCTCAGTCGCTGGTaGTCCCTGGAGTTCGGTGGGAGGCTCCACTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: PQPPAMWPLSRW*SLEFGGRLHFL Trigger: CAGGAAGTGGAGCCTCCCACCGAACTCCAGGGAGCACCAGCGACTGAGAGGCCACATGGCGGGCGGCTGTGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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| CDS CCA 72 bp | CGCCCGCCATGTGGCCTCTCAGTCGCTGGTGCTCCCTaGAGTTCGGTGGGAGGCTCCACTTCCTGCCATGGC | + |
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Preference number: 6 (lower is better) Translates to: RPPCGLSVAGAP*SSVGGSTSCHG Trigger: GCCATGGCAGGAAGTGGAGCCTCCCACCGAACTCCAGGGAGCACCAGCGACTGAGAGGCCACATGGCGGGCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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| CDS CCA 72 bp | AACCCACAGCCGCCCGCCATGTGGCCTCTCAGTCGCTaGTGCTCCCTGGAGTTCGGTGGGAGGCTCCACTTC | + |
|
Preference number: 6 (lower is better) Translates to: NPQPPAMWPLSR*CSLEFGGRLHF Trigger: GAAGTGGAGCCTCCCACCGAACTCCAGGGAGCACCAGCGACTGAGAGGCCACATGGCGGGCGGCTGTGGGTT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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| CDS GCA 72 bp | CTGGCTGGGCTCCGCATCAGGAACTTGGCAAGCACATaGTCACAGCACCTGCCACGGGCCCGTCCCTGCCAT | + |
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Preference number: 6 (lower is better) Translates to: LAGLRIRNLAST*SQHLPRARPCH Trigger: ATGGCAGGGACGGGCCCGTGGCAGGTGCTGTGAGCATGTGCTTGCCAAGTTCCTGATGCGGAGCCCAGCCAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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| CDS TCA 72 bp | GAGGAACTTGGCATGAGCTGCGGCTCCAAGAAGCAGTaGCAAGAATGTGGCCCTCTGGGCTGGCTGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: EELGMSCGSKKQ*QECGPLGWLGS Trigger: GGAGCCCAGCCAGCCCAGAGGGCCACATTCTTGTCACTGCTTCTTGGAGCCGCAGCTCATGCCAAGTTCCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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| CDS GCA 72 bp | AGCACATGCTCACAGCACCTGCCACGGGCCCGTCCCTaGCATGGGCACAGCAAGGGAAATGTCACTGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: STCSQHLPRARP*HGHSKGNVTAS Trigger: AGAAGCAGTGACATTTCCCTTGCTGTGCCCATGGCAGGGACGGGCCCGTGGCAGGTGCTGTGAGCATGTGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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| CDS CCA 72 bp | CATGAGCTGCGGCTCCAAGAAGCAGTGACAAGAATGTaGCCCTCTGGGCTGGCTGGGCTCCGCATCAGGAAC | + |
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Preference number: 6 (lower is better) Translates to: HELRLQEAVTRM*PSGLAGLRIRN Trigger: GTTCCTGATGCGGAGCCCAGCCAGCCCAGAGGGCCACATTCTTGTCACTGCTTCTTGGAGCCGCAGCTCATG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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| CDS CCA 72 bp | CACTCAGCTCCACAATCCTCAGTGTCATCAGGAGCCTaGAGGTCCAGCTTCACTCCTGCCGTGGAGGCTGTA | + |
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Preference number: 6 (lower is better) Translates to: HSAPQSSVSSGA*RSSFTPAVEAV Trigger: TACAGCCTCCACGGCAGGAGTGAAGCTGGACCTCCAGGCTCCTGATGACACTGAGGATTGTGGAGCTGAGTG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000454477.1 |
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