Pregenerated sensors for LINC01874 (Homo sapiens)
Ensembl gene IDs: ENSG00000223985Ensembl transcript IDs: ENST00000427398.1, ENST00000656189.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ACAGCGCAGTCGGAGGAGAGTCAGAATGTCTCTAGGATGAAGGAATaGGCAGTGGGGAGCGTGGCTGGTCCCCAGCAGCCCAGACTTGGG | + |
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Preference number: 5 (lower is better) Translates to: TAQSEESQNVSRMKE*AVGSVAGPQQPRLG Trigger: CCCAAGTCTGGGCTGCTGGGGACCAGCCACGCTCCCCACTGCTCATTCCTTCATCCTAGAGACATTCTGACTCTCCTCCGACTGCGCTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000427398.1 ENST00000656189.1 |
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| CDS TCA 90 bp | ACCTGTGCACAGCGCAGTCGGAGGAGAGTCAGAATGTCTCTAGGATaGAGGAATGAGCAGTGGGGAGCGTGGCTGGTCCCCAGCAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: TCAQRSRRRVRMSLG*RNEQWGAWLVPSSP Trigger: TGGGCTGCTGGGGACCAGCCACGCTCCCCACTGCTCATTCCTTCATCCTAGAGACATTCTGACTCTCCTCCGACTGCGCTGTGCACAGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000427398.1 ENST00000656189.1 |
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| CDS GCA 90 bp | GGCCAGACGCTTCACCTGGAACACAAGCAGGACCACGTAAGTTGTTaGTGGACACAGCTAAACAGGCTCCCTTCACCTGCCAACAAGCTG | + |
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Preference number: 5 (lower is better) Translates to: GQTLHLEHKQDHVSC*WTQLNRLPSPANKL Trigger: CAGCTTGTTGGCAGGTGAAGGGAGCCTGTTTAGCTGTGTCCAGCAACAACTTACGTGGTCCTGCTTGTGTTCCAGGTGAAGCGTCTGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427398.1 |
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| CDS CCA 90 bp | CAGACGCTTCACCTGGAACACAAGCAGGACCACGTAAGTTGTTGCTaGACACAGCTAAACAGGCTCCCTTCACCTGCCAACAAGCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: QTLHLEHKQDHVSCC*TQLNRLPSPANKLQ Trigger: CTGCAGCTTGTTGGCAGGTGAAGGGAGCCTGTTTAGCTGTGTCCAGCAACAACTTACGTGGTCCTGCTTGTGTTCCAGGTGAAGCGTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427398.1 |
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| CDS GCA 90 bp | CCACGTAAGTTGTTGCTGGACACAGCTAAACAGGCTCCCTTCACCTaGCAACAAGCTGCAGTTCCTCTGCCTAGCAGCACGAACTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: PRKLLLDTAKQAPFT*QQAAVPLPSSTNFP Trigger: AGGAAAGTTCGTGCTGCTAGGCAGAGGAACTGCAGCTTGTTGGCAGGTGAAGGGAGCCTGTTTAGCTGTGTCCAGCAACAACTTACGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427398.1 |
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| CDS GCA 90 bp | CAATATTTGTTGGATGCATATCAATCTGCTAAGTGCCTGAAGTTGTaGAGACTGAGATGTAAAAGAGCTTGTCACACCTGTGCACAGCGC | + |
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Preference number: 5 (lower is better) Translates to: QYLLDAYQSAKCLKL*RLRCKRACHTCAQR Trigger: GCGCTGTGCACAGGTGTGACAAGCTCTTTTACATCTCAGTCTGCACAACTTCAGGCACTTAGCAGATTGATATGCATCCAACAAATATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000427398.1 ENST00000656189.1 |
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| CDS CCA 72 bp | GCGCCGAGACCTGACCCATCAGATCCCCGCCTTTGCTaGGGTACTGCGGTGGCCACAACTCGCATGGAGCGC | + |
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Preference number: 6 (lower is better) Translates to: APRPDPSDPRLC*GTAVATTRMER Trigger: GCGCTCCATGCGAGTTGTGGCCACCGCAGTACCCCAGCAAAGGCGGGGATCTGATGGGTCAGGTCTCGGCGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656189.1 |
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| CDS GCA 72 bp | CCAGCGCCGAGACCTGACCCATCAGATCCCCGCCTTTaGTGGGGTACTGCGGTGGCCACAACTCGCATGGAG | + |
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Preference number: 6 (lower is better) Translates to: PAPRPDPSDPRL*WGTAVATTRME Trigger: CTCCATGCGAGTTGTGGCCACCGCAGTACCCCAGCAAAGGCGGGGATCTGATGGGTCAGGTCTCGGCGCTGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000656189.1 |
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| CDS CAA 90 bp | CGGCGGCCAGACGCTTCACCTGGAACACAAGCAGGACCACGTAAGTaGTTGCTGGACACAGCTAAACAGGCTCCCTTCACCTGCCAACAA | + |
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Preference number: 6 (lower is better) Translates to: RRPDASPGTQAGPRK*LLDTAKQAPFTCQQ Trigger: TTGTTGGCAGGTGAAGGGAGCCTGTTTAGCTGTGTCCAGCAACAACTTACGTGGTCCTGCTTGTGTTCCAGGTGAAGCGTCTGGCCGCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427398.1 |
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| CDS CAA 90 bp | CGGCCAGACGCTTCACCTGGAACACAAGCAGGACCACGTAAGTTGTaGCTGGACACAGCTAAACAGGCTCCCTTCACCTGCCAACAAGCT | + |
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Preference number: 6 (lower is better) Translates to: RPDASPGTQAGPRKL*LDTAKQAPFTCQQA Trigger: AGCTTGTTGGCAGGTGAAGGGAGCCTGTTTAGCTGTGTCCAGCAACAACTTACGTGGTCCTGCTTGTGTTCCAGGTGAAGCGTCTGGCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427398.1 |
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| CDS TCA 72 bp | GCAGCCCAGACTTGGGGTCCTTGTGGCAGCATGAGATaGTGTCATTGCTGGATGGATCCCCCGAGGAAAGAA | + |
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Preference number: 6 (lower is better) Translates to: AAQTWGPCGSMR*CHCWMDPPRKE Trigger: TTCTTTCCTCGGGGGATCCATCCAGCAATGACATCATCTCATGCTGCCACAAGGACCCCAAGTCTGGGCTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000427398.1 ENST00000656189.1 |
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| CDS GCA 72 bp | TTGTTGCTGGACACAGCTAAACAGGCTCCCTTCACCTaGCAACAAGCTGCAGTTCCTCTGCCTAGCAGCACG | + |
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Preference number: 6 (lower is better) Translates to: LLLDTAKQAPFT*QQAAVPLPSST Trigger: CGTGCTGCTAGGCAGAGGAACTGCAGCTTGTTGGCAGGTGAAGGGAGCCTGTTTAGCTGTGTCCAGCAACAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427398.1 |
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| CDS GCA 72 bp | CTTCACCTGGAACACAAGCAGGACCACGTAAGTTGTTaGTGGACACAGCTAAACAGGCTCCCTTCACCTGCC | + |
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Preference number: 6 (lower is better) Translates to: LHLEHKQDHVSC*WTQLNRLPSPA Trigger: GGCAGGTGAAGGGAGCCTGTTTAGCTGTGTCCAGCAACAACTTACGTGGTCCTGCTTGTGTTCCAGGTGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427398.1 |
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| CDS CCA 72 bp | CACCTGGAACACAAGCAGGACCACGTAAGTTGTTGCTaGACACAGCTAAACAGGCTCCCTTCACCTGCCAAC | + |
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Preference number: 6 (lower is better) Translates to: HLEHKQDHVSCC*TQLNRLPSPAN Trigger: GTTGGCAGGTGAAGGGAGCCTGTTTAGCTGTGTCCAGCAACAACTTACGTGGTCCTGCTTGTGTTCCAGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427398.1 |
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| CDS CAA 72 bp | GCTTCACCTGGAACACAAGCAGGACCACGTAAGTTGTaGCTGGACACAGCTAAACAGGCTCCCTTCACCTGC | + |
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Preference number: 6 (lower is better) Translates to: ASPGTQAGPRKL*LDTAKQAPFTC Trigger: GCAGGTGAAGGGAGCCTGTTTAGCTGTGTCCAGCAACAACTTACGTGGTCCTGCTTGTGTTCCAGGTGAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427398.1 |
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| CDS CAA 72 bp | GACGCTTCACCTGGAACACAAGCAGGACCACGTAAGTaGTTGCTGGACACAGCTAAACAGGCTCCCTTCACC | + |
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Preference number: 6 (lower is better) Translates to: DASPGTQAGPRK*LLDTAKQAPFT Trigger: GGTGAAGGGAGCCTGTTTAGCTGTGTCCAGCAACAACTTACGTGGTCCTGCTTGTGTTCCAGGTGAAGCGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427398.1 |
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| CDS CAA 72 bp | GACTTGGGGTCCTTGTGGCAGCATGAGATGATGTCATaGCTGGATGGATCCCCCGAGGAAAGAATGAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: DLGSLWQHEMMS*LDGSPEERMSR Trigger: CCTGCTCATTCTTTCCTCGGGGGATCCATCCAGCAATGACATCATCTCATGCTGCCACAAGGACCCCAAGTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000427398.1 ENST00000656189.1 |
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| CDS GCA 72 bp | TTGGATGCATATCAATCTGCTAAGTGCCTGAAGTTGTaGAGACTGAGATGTAAAAGAGCTTGTCACACCTGT | + |
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Preference number: 6 (lower is better) Translates to: LDAYQSAKCLKL*RLRCKRACHTC Trigger: ACAGGTGTGACAAGCTCTTTTACATCTCAGTCTGCACAACTTCAGGCACTTAGCAGATTGATATGCATCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000427398.1 ENST00000656189.1 |
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| CDS CAA 72 bp | TTGTTGGATGCATATCAATCTGCTAAGTGCCTGAAGTaGTGCAGACTGAGATGTAAAAGAGCTTGTCACACC | + |
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Preference number: 6 (lower is better) Translates to: LLDAYQSAKCLK*CRLRCKRACHT Trigger: GGTGTGACAAGCTCTTTTACATCTCAGTCTGCACAACTTCAGGCACTTAGCAGATTGATATGCATCCAACAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000427398.1 ENST00000656189.1 |
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| CDS CAA 90 bp | AATCAATATTTGTTGGATGCATATCAATCTGCTAAGTGCCTGAAGTaGTGCAGACTGAGATGTAAAAGAGCTTGTCACACCTGTGCACAG | + |
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Preference number: 6 (lower is better) Translates to: NQYLLDAYQSAKCLK*CRLRCKRACHTCAQ Trigger: CTGTGCACAGGTGTGACAAGCTCTTTTACATCTCAGTCTGCACAACTTCAGGCACTTAGCAGATTGATATGCATCCAACAAATATTGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000427398.1 ENST00000656189.1 |
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| CDS GCA 72 bp | AATCAATATTTGTTGGATGCATATCAATCTGCTAAGTaGCTGAAGTTGTGCAGACTGAGATGTAAAAGAGCT | + |
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Preference number: 6 (lower is better) Translates to: NQYLLDAYQSAK*LKLCRLRCKRA Trigger: AGCTCTTTTACATCTCAGTCTGCACAACTTCAGGCACTTAGCAGATTGATATGCATCCAACAAATATTGATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000427398.1 ENST00000656189.1 |
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