Pregenerated sensors for LINC01873 (Homo sapiens)
Ensembl gene IDs: ENSG00000232164Ensembl transcript IDs: ENST00000428647.1
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CACCCAGTTCGAGCTTCCAGGCTGCTTTGTTTACCTAAGCAAGCCTaGGCAATGGCGGGCGCCCCTCCCCCAGCCTGGCTGCCGCCTTGC | + |
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Preference number: 5 (lower is better) Translates to: HPVRASRLLCLPKQA*AMAGAPPPAWLPPC Trigger: GCAAGGCGGCAGCCAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCTGGAAGCTCGAACTGGGTG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS GCA 90 bp | GCCCCTCCCCCAGCCTGGCTGCCGCCTTGCAGTTTGATCTCAGACTaGTGTGCTAGCAATCAGCGAGACTCCGCGGGCGTAGGATCCTCC | + |
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Preference number: 5 (lower is better) Translates to: APPPAWLPPCSLISD*CASNQRDSAGVGSS Trigger: GGAGGATCCTACGCCCGCGGAGTCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAGCCAGGCTGGGGGAGGGGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS TCA 90 bp | GCCTCCCAGTTAGGCTGCTCGGGGGTCAGGGGTCAGGGACCCACTTaGGGAGGCAGTCTGCCCATTCTCAGATATCCAGCTGCGTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: ASQLGCSGVRGQGPT*GGSLPILRYPAACW Trigger: CCAGCACGCAGCTGGATATCTGAGAATGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAACTGGGAGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS CCA 90 bp | TTACCTAAGCAAGCCTGGGCAATGGCGGGCGCCCCTCCCCCAGCCTaGCTGCCGCCTTGCAGTTTGATCTCAGACTGCTGTGCTAGCAAT | + |
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Preference number: 5 (lower is better) Translates to: LPKQAWAMAGAPPPA*LPPCSLISDCCASN Trigger: ATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAGCCAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS CCA 90 bp | TTACTACTGCTGTCTTTTTGTTTGTCTGTGCCCTGCCCCCAGAGGTaGAGCCTACAGAGGCAGGCAGGCCTCCTTGAGCTGTGGTGGGCT | + |
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Preference number: 5 (lower is better) Translates to: LLLLSFCLSVPCPQR*SLQRQAGLLELWWA Trigger: AGCCCACCACAGCTCAAGGAGGCCTGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAGTAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS GCA 90 bp | ATGAACCCGGTACCTCAGATGGAAATGCAGAAATCACCCGTCTTCTaGGTCGCTCACGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTC | + |
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Preference number: 5 (lower is better) Translates to: MNPVPQMEMQKSPVF*VAHAGSCRPELFLF Trigger: GAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS TCA 90 bp | ATCCAGAAGACACCCTGGCTGACTAGTTCCCAGCCCCAGGGTGTCTaGTTCAGAAGTTTCGGCATGAATCCCCAGGTATACGATTATGCT | + |
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Preference number: 5 (lower is better) Translates to: IQKTPWLTSSQPQGV*FRSFGMNPQVYDYA Trigger: AGCATAATCGTATACCTGGGGATTCATGCCGAAACTTCTGAATCAGACACCCTGGGGCTGGGAACTAGTCAGCCAGGGTGTCTTCTGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS GCA 90 bp | CCTTTCTGTTTGTTAGTTTTCCTTCTAACAGACAGAACCCTCAGCTaGAGGTCTGTTGGAATACCCTGCCGTGTGAGGTGTCAGTGTGCC | + |
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Preference number: 5 (lower is better) Translates to: PFCLLVFLLTDRTLS*RSVGIPCRVRCQCA Trigger: GGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTTCTGTCTGTTAGAAGGAAAACTAACAAACAGAAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS CCA 72 bp | CGAGCTTCCAGGCTGCTTTGTTTACCTAAGCAAGCCTaGGCAATGGCGGGCGCCCCTCCCCCAGCCTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: RASRLLCLPKQA*AMAGAPPPAWL Trigger: CAGCCAGGCTGGGGGAGGGGCGCCCGCCATTGCCCAGGCTTGCTTAGGTAAACAAAGCAGCCTGGAAGCTCG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS CAA 72 bp | GGCGCCCCTCCCCCAGCCTGGCTGCCGCCTTGCAGTTaGATCTCAGACTGCTGTGCTAGCAATCAGCGAGAC | + |
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Preference number: 6 (lower is better) Translates to: GAPPPAWLPPCS*ISDCCASNQRD Trigger: GTCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAGCCAGGCTGGGGGAGGGGCGCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS TCA 72 bp | GCCCTGCTTCGGCTCGTGCACGGTGCATGCACCCAATaGCCTGCGCTCACTGTCTGGCACTCCCTAGTGAGA | + |
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Preference number: 6 (lower is better) Translates to: ALLRLVHGACTQ*PALTVWHSLVR Trigger: TCTCACTAGGGAGTGCCAGACAGTGAGCGCAGGTCATTGGGTGCATGCACCGTGCACGAGCCGAAGCAGGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS TCA 72 bp | GCGCCCCTCCCCCAGCCTGGCTGCCGCCTTGCAGTTTaGTCTCAGACTGCTGTGCTAGCAATCAGCGAGACT | + |
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Preference number: 6 (lower is better) Translates to: APLPQPGCRLAV*SQTAVLAISET Trigger: AGTCTCGCTGATTGCTAGCACAGCAGTCTGAGATCAAACTGCAAGGCGGCAGCCAGGCTGGGGGAGGGGCGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS GCA 72 bp | AACTCCCTGACCCCTTGCACTTCCCAAGTGAGGCAATaGCTCGCCCTGCTTCGGCTCGTGCACGGTGCATGC | + |
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Preference number: 6 (lower is better) Translates to: NSLTPCTSQVRQ*LALLRLVHGAC Trigger: GCATGCACCGTGCACGAGCCGAAGCAGGGCGAGGCATTGCCTCACTTGGGAAGTGCAAGGGGTCAGGGAGTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS GCA 72 bp | GGGTCAGGGGTCAGGGACCCACTTGAGGAGGCAGTCTaGCCATTCTCAGATATCCAGCTGCGTGCTGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: GSGVRDPLEEAV*PFSDIQLRAGR Trigger: TCTCCCAGCACGCAGCTGGATATCTGAGAATGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS CAA 72 bp | GTTAGGCTGCTCGGGGGTCAGGGGTCAGGGACCCACTaGAGGAGGCAGTCTGCCCATTCTCAGATATCCAGC | + |
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Preference number: 6 (lower is better) Translates to: VRLLGGQGSGTH*RRQSAHSQISS Trigger: GCTGGATATCTGAGAATGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS TCA 72 bp | TTAGGCTGCTCGGGGGTCAGGGGTCAGGGACCCACTTaGGGAGGCAGTCTGCCCATTCTCAGATATCCAGCT | + |
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Preference number: 6 (lower is better) Translates to: LGCSGVRGQGPT*GGSLPILRYPA Trigger: AGCTGGATATCTGAGAATGGGCAGACTGCCTCCTCAAGTGGGTCCCTGACCCCTGACCCCCGAGCAGCCTAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS CAA 90 bp | TCCGTCACCCCTTTCTTTGACTCGGAAAGGGAACTCCCTGACCCCTaGCACTTCCCAAGTGAGGCAATGCCTCGCCCTGCTTCGGCTCGT | + |
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Preference number: 6 (lower is better) Translates to: SVTPFFDSERELPDP*HFPSEAMPRPASAR Trigger: ACGAGCCGAAGCAGGGCGAGGCATTGCCTCACTTGGGAAGTGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGGGGTGACGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS CCA 72 bp | CCTTCTAACAGACAGAACCCTCAGCTGCAGGTCTGTTaGAATACCCTGCCGTGTGAGGTGTCAGTGTGCCCC | + |
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Preference number: 6 (lower is better) Translates to: PSNRQNPQLQVC*NTLPCEVSVCP Trigger: GGGGCACACTGACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTTCTGTCTGTTAGAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS CAA 72 bp | CCTTTCTTTGACTCGGAAAGGGAACTCCCTGACCCCTaGCACTTCCCAAGTGAGGCAATGCCTCGCCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: PFFDSERELPDP*HFPSEAMPRPA Trigger: AGCAGGGCGAGGCATTGCCTCACTTGGGAAGTGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS GCA 72 bp | CTTTCTTTGACTCGGAAAGGGAACTCCCTGACCCCTTaGACTTCCCAAGTGAGGCAATGCCTCGCCCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: LSLTRKGNSLTP*TSQVRQCLALL Trigger: AAGCAGGGCGAGGCATTGCCTCACTTGGGAAGTGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS TCA 72 bp | ACACCCTGGCTGACTAGTTCCCAGCCCCAGGGTGTCTaGTTCAGAAGTTTCGGCATGAATCCCCAGGTATAC | + |
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Preference number: 6 (lower is better) Translates to: TPWLTSSQPQGV*FRSFGMNPQVY Trigger: GTATACCTGGGGATTCATGCCGAAACTTCTGAATCAGACACCCTGGGGCTGGGAACTAGTCAGCCAGGGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS GCA 72 bp | TTGAGGAGGCAGTCTGCCCATTCTCAGATATCCAGCTaGGTGCTGGGAGAACCACTGCTCTCTTCAAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: LRRQSAHSQISS*VLGEPLLSSKL Trigger: CAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGATATCTGAGAATGGGCAGACTGCCTCCTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS CCA 72 bp | GGCAGTCTGCCCATTCTCAGATATCCAGCTGCGTGCTaGGAGAACCACTGCTCTCTTCAAAGCTGTCAGACA | + |
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Preference number: 6 (lower is better) Translates to: GSLPILRYPAAC*ENHCSLQSCQT Trigger: TGTCTGACAGCTTTGAAGAGAGCAGTGGTTCTCCCAGCACGCAGCTGGATATCTGAGAATGGGCAGACTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS CAA 90 bp | CAGGGACATTTAAGTGTGCAGAGGTTACTACTGCTGTCTTTTTGTTaGTCTGTGCCCTGCCCCCAGAGGTGGAGCCTACAGAGGCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: QGHLSVQRLLLLSFC*SVPCPQRWSLQRQA Trigger: TGCCTGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAGTAACCTCTGCACACTTAAATGTCCCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS TCA 72 bp | AAAGTCATTCTCCATCCAGCTTTGTTCCGTTGCTGGTaGGGAACTGCGTTCCTTTGGAGGAGGAGAGGCGCT | + |
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Preference number: 6 (lower is better) Translates to: KVILHPALFRCW*GTAFLWRRRGA Trigger: AGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTCACCAGCAACGGAACAAAGCTGGATGGAGAATGACTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS CAA 90 bp | CAGACAGGGACATTTAAGTGTGCAGAGGTTACTACTGCTGTCTTTTaGTTTGTCTGTGCCCTGCCCCCAGAGGTGGAGCCTACAGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: QTGTFKCAEVTTAVF*FVCALPPEVEPTEA Trigger: TGCCTCTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAGTAACCTCTGCACACTTAAATGTCCCTGTCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS CAA 72 bp | TTAAGTGTGCAGAGGTTACTACTGCTGTCTTTTTGTTaGTCTGTGCCCTGCCCCCAGAGGTGGAGCCTACAG | + |
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Preference number: 6 (lower is better) Translates to: LSVQRLLLLSFC*SVPCPQRWSLQ Trigger: CTGTAGGCTCCACCTCTGGGGGCAGGGCACAGACAAACAAAAAGACAGCAGTAGTAACCTCTGCACACTTAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS TCA 72 bp | CTGATACCCTTTCTTCCAGTTGATTGCATCGGCTCTTaGGGCTTCTGCATTCTTCACGTAGTTCTCGAGCCT | + |
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Preference number: 6 (lower is better) Translates to: LIPFLPVDCIGS*GFCILHVVLEP Trigger: AGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAAGAGCCGATGCAATCAACTGGAAGAAAGGGTATCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS GCA 72 bp | TTGTTAGTTTTCCTTCTAACAGACAGAACCCTCAGCTaGAGGTCTGTTGGAATACCCTGCCGTGTGAGGTGT | + |
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Preference number: 6 (lower is better) Translates to: LLVFLLTDRTLS*RSVGIPCRVRC Trigger: ACACCTCACACGGCAGGGTATTCCAACAGACCTGCAGCTGAGGGTTCTGTCTGTTAGAAGGAAAACTAACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS GCA 72 bp | GAGGAACTGCGTTCCTTTGGAGGAGGAGAGGCGCTCTaGGTTTTAGAGTTTCCAGTTTTTCTGTTCTGTTTT | + |
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Preference number: 6 (lower is better) Translates to: EELRSFGGGEAL*VLEFPVFLFCF Trigger: AAAACAGAACAGAAAAACTGGAAACTCTAAAACGCAGAGCGCCTCTCCTCCTCCAAAGGAACGCAGTTCCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS CAA 72 bp | TTGAGGCTTCTGCATTCTTCACGTAGTTCTCGAGCCTaGGTTTTCAGCTCCATCAGCTCCTTTAAGCACTTC | + |
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Preference number: 6 (lower is better) Translates to: LRLLHSSRSSRA*VFSSISSFKHF Trigger: GAAGTGCTTAAAGGAGCTGATGGAGCTGAAAACCAAGGCTCGAGAACTACGTGAAGAATGCAGAAGCCTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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| CDS TCA 72 bp | TTCTCGCTTCATTTCATTCATTTCATCTTCCATCGCTaGTACCCTTTCTTCCAGTTGATTGCATCGGCTCTT | + |
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Preference number: 6 (lower is better) Translates to: FSLHFIHFIFHR*YPFFQLIASAL Trigger: AAGAGCCGATGCAATCAACTGGAAGAAAGGGTATCAGCGATGGAAGATGAAATGAATGAAATGAAGCGAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428647.1 |
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