Pregenerated sensors for LINC01872 (Homo sapiens)
Ensembl gene IDs: ENSG00000268318Ensembl transcript IDs: ENST00000594261.5, ENST00000595566.1, ENST00000600813.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTAAGGCAGAGGAAGGCTAACGGATTCGCTGAACTGGGAGTCCCCTaGGGCCTCGCCAACCTCCTTGCACGGGGATACCAATCCCTTGAA | + |
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Preference number: 5 (lower is better) Translates to: LRQRKANGFAELGVP*GLANLLARGYQSLE Trigger: TTCAAGGGATTGGTATCCCCGTGCAAGGAGGTTGGCGAGGCCTCAGGGGACTCCCAGTTCAGCGAATCCGTTAGCCTTCCTCTGCCTTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000595566.1 |
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| CDS TCA 90 bp | CGTGGAATAACCGTGTACACAAACACGGAGTGCCTCACGGGGAAGTaGCTAAGGCAGAGGAAGGCTAACGGATTCGCTGAACTGGGAGTC | + |
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Preference number: 5 (lower is better) Translates to: RGITVYTNTECLTGK*LRQRKANGFAELGV Trigger: GACTCCCAGTTCAGCGAATCCGTTAGCCTTCCTCTGCCTTAGTCACTTCCCCGTGAGGCACTCCGTGTTTGTGTACACGGTTATTCCACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000594261.5 ENST00000595566.1 |
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| CDS CCA 90 bp | CTGTTTTCAATGACTCCGGATGCGCCCGATGAACTGACTGACACGTaGAATAACCGTGTACACAAACACGGAGTGCCTCACGGGGAAGTG | + |
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Preference number: 5 (lower is better) Translates to: LFSMTPDAPDELTDT*NNRVHKHGVPHGEV Trigger: CACTTCCCCGTGAGGCACTCCGTGTTTGTGTACACGGTTATTCCACGTGTCAGTCAGTTCATCGGGCGCATCCGGAGTCATTGAAAACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000594261.5 ENST00000595566.1 |
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| CDS CCA 90 bp | GCTGCAACAATAGCTCCCAGTCTCAGGGTCCAAGGAGCTCCAGCCTaGTCCTTCCTCAGCACTATTTCCTTAAAAACCGAATGTCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: AATIAPSLRVQGAPA*SFLSTISLKTECPP Trigger: AGGAGGACATTCGGTTTTTAAGGAAATAGTGCTGAGGAAGGACCAGGCTGGAGCTCCTTGGACCCTGAGACTGGGAGCTATTGTTGCAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000595566.1 |
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| CDS CCA 90 bp | AAGCTGAGGAGCTCGGACTCCCTCCCACGTCAATGGGGGAAGTCATaGAAATTATGGAATGGTTTTGAACCATGGGAGAACGGGTTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: KLRSSDSLPRQWGKS*KLWNGFEPWENGFG Trigger: CCCAAACCCGTTCTCCCATGGTTCAAAACCATTCCATAATTTCCATGACTTCCCCCATTGACGTGGGAGGGAGTCCGAGCTCCTCAGCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000595566.1 |
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| CDS TCA 90 bp | CCTCCCACGTCAATGGGGGAAGTCATGGAAATTATGGAATGGTTTTaGACCATGGGAGAACGGGTTTGGGTGTTCGAAAGGTTCCTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: PPTSMGEVMEIMEWF*TMGERVWVFERFLW Trigger: CCAGAGGAACCTTTCGAACACCCAAACCCGTTCTCCCATGGTTCAAAACCATTCCATAATTTCCATGACTTCCCCCATTGACGTGGGAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000595566.1 |
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| CDS CCA 90 bp | AGCTCGGACTCCCTCCCACGTCAATGGGGGAAGTCATGGAAATTATaGAATGGTTTTGAACCATGGGAGAACGGGTTTGGGTGTTCGAAA | + |
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Preference number: 5 (lower is better) Translates to: SSDSLPRQWGKSWKL*NGFEPWENGFGCSK Trigger: TTTCGAACACCCAAACCCGTTCTCCCATGGTTCAAAACCATTCCATAATTTCCATGACTTCCCCCATTGACGTGGGAGGGAGTCCGAGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000595566.1 |
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| CDS CCA 90 bp | CGTCAATGGGGGAAGTCATGGAAATTATGGAATGGTTTTGAACCATaGGAGAACGGGTTTGGGTGTTCGAAAGGTTCCTCTGGGTCTGCA | + |
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Preference number: 5 (lower is better) Translates to: RQWGKSWKLWNGFEP*ENGFGCSKGSSGSA Trigger: TGCAGACCCAGAGGAACCTTTCGAACACCCAAACCCGTTCTCCCATGGTTCAAAACCATTCCATAATTTCCATGACTTCCCCCATTGACG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000595566.1 |
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| CDS CCA 90 bp | GCTGATGTTTTTGTTGAGCCAGTAGTGCATGATCATGGAATTGCTTaGGGGTTCTTTGGGAAATTCAAATGCACAAGGGATTGTAGTGCA | + |
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Preference number: 5 (lower is better) Translates to: ADVFVEPVVHDHGIA*GFFGKFKCTRDCSA Trigger: TGCACTACAATCCCTTGTGCATTTGAATTTCCCAAAGAACCCCCAAGCAATTCCATGATCATGCACTACTGGCTCAACAAAAACATCAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000594261.5 ENST00000600813.1 |
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| CDS TCA 72 bp | AGGAAGGCTAACGGATTCGCTGAACTGGGAGTCCCCTaGGGCCTCGCCAACCTCCTTGCACGGGGATACCAA | + |
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Preference number: 6 (lower is better) Translates to: RKANGFAELGVP*GLANLLARGYQ Trigger: TTGGTATCCCCGTGCAAGGAGGTTGGCGAGGCCTCAGGGGACTCCCAGTTCAGCGAATCCGTTAGCCTTCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000594261.5 ENST00000595566.1 |
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| CDS CCA 72 bp | ATGGGAGAACGGGTTTGGGTGTTCGAAAGGTTCCTCTaGGTCTGCAGTGAGGAGGAAGCAACAGTCCAGGAG | + |
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Preference number: 6 (lower is better) Translates to: MGERVWVFERFL*VCSEEEATVQE Trigger: CTCCTGGACTGTTGCTTCCTCCTCACTGCAGACCCAGAGGAACCTTTCGAACACCCAAACCCGTTCTCCCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595566.1 |
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| CDS TCA 72 bp | ACCGTGTACACAAACACGGAGTGCCTCACGGGGAAGTaGCTAAGGCAGAGGAAGGCTAACGGATTCGCTGAA | + |
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Preference number: 6 (lower is better) Translates to: TVYTNTECLTGK*LRQRKANGFAE Trigger: TTCAGCGAATCCGTTAGCCTTCCTCTGCCTTAGTCACTTCCCCGTGAGGCACTCCGTGTTTGTGTACACGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000594261.5 ENST00000595566.1 |
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| CDS CCA 72 bp | ATGACTCCGGATGCGCCCGATGAACTGACTGACACGTaGAATAACCGTGTACACAAACACGGAGTGCCTCAC | + |
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Preference number: 6 (lower is better) Translates to: MTPDAPDELTDT*NNRVHKHGVPH Trigger: GTGAGGCACTCCGTGTTTGTGTACACGGTTATTCCACGTGTCAGTCAGTTCATCGGGCGCATCCGGAGTCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000594261.5 ENST00000595566.1 |
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| CDS TCA 72 bp | GAGGAAGCAACAGTCCAGGAGAAAGAGGATGAAGTCTaGGCTGCAACAATAGCTCCCAGTCTCAGGGTCCAA | + |
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Preference number: 6 (lower is better) Translates to: EEATVQEKEDEV*AATIAPSLRVQ Trigger: TTGGACCCTGAGACTGGGAGCTATTGTTGCAGCTCAGACTTCATCCTCTTTCTCCTGGACTGTTGCTTCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595566.1 |
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| CDS CCA 72 bp | GCCAAGCTGAGGAGCTCGGACTCCCTCCCACGTCAATaGGGGAAGTCATGGAAATTATGGAATGGTTTTGAA | + |
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Preference number: 6 (lower is better) Translates to: AKLRSSDSLPRQ*GKSWKLWNGFE Trigger: TTCAAAACCATTCCATAATTTCCATGACTTCCCCCATTGACGTGGGAGGGAGTCCGAGCTCCTCAGCTTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000595566.1 |
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| CDS CAA 90 bp | CCCTCCCACGTCAATGGGGGAAGTCATGGAAATTATGGAATGGTTTaGAACCATGGGAGAACGGGTTTGGGTGTTCGAAAGGTTCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: PSHVNGGSHGNYGMV*NHGRTGLGVRKVPL Trigger: CAGAGGAACCTTTCGAACACCCAAACCCGTTCTCCCATGGTTCAAAACCATTCCATAATTTCCATGACTTCCCCCATTGACGTGGGAGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000595566.1 |
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| CDS CCA 72 bp | TCCCTCCCACGTCAATGGGGGAAGTCATGGAAATTATaGAATGGTTTTGAACCATGGGAGAACGGGTTTGGG | + |
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Preference number: 6 (lower is better) Translates to: SLPRQWGKSWKL*NGFEPWENGFG Trigger: CCCAAACCCGTTCTCCCATGGTTCAAAACCATTCCATAATTTCCATGACTTCCCCCATTGACGTGGGAGGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000595566.1 |
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| CDS CCA 72 bp | AGCTCGGACTCCCTCCCACGTCAATGGGGGAAGTCATaGAAATTATGGAATGGTTTTGAACCATGGGAGAAC | + |
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Preference number: 6 (lower is better) Translates to: SSDSLPRQWGKS*KLWNGFEPWEN Trigger: GTTCTCCCATGGTTCAAAACCATTCCATAATTTCCATGACTTCCCCCATTGACGTGGGAGGGAGTCCGAGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000595566.1 |
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| CDS CAA 72 bp | ACCAGGATGTATCCTGCTGCTAACTCTGACCTCAGATaGGTCTGTCCTGTAGTTCCAGCTACTCAGGAAGCT | + |
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Preference number: 6 (lower is better) Translates to: TRMYPAANSDLR*VCPVVPATQEA Trigger: AGCTTCCTGAGTAGCTGGAACTACAGGACAGACCAATCTGAGGTCAGAGTTAGCAGCAGGATACATCCTGGT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000594261.5 |
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| CDS CAA 72 bp | GTCAATGGGGGAAGTCATGGAAATTATGGAATGGTTTaGAACCATGGGAGAACGGGTTTGGGTGTTCGAAAG | + |
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Preference number: 6 (lower is better) Translates to: VNGGSHGNYGMV*NHGRTGLGVRK Trigger: CTTTCGAACACCCAAACCCGTTCTCCCATGGTTCAAAACCATTCCATAATTTCCATGACTTCCCCCATTGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000595566.1 |
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| CDS CCA 72 bp | TTTGTTGAGCCAGTAGTGCATGATCATGGAATTGCTTaGGGGTTCTTTGGGAAATTCAAATGCACAAGGGAT | + |
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Preference number: 6 (lower is better) Translates to: FVEPVVHDHGIA*GFFGKFKCTRD Trigger: ATCCCTTGTGCATTTGAATTTCCCAAAGAACCCCCAAGCAATTCCATGATCATGCACTACTGGCTCAACAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000594261.5 ENST00000600813.1 |
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| CDS TCA 72 bp | TTCCAAACCACTTATCGGATGATATTGAACATCACCTaGCACAAAAAGTTTGATATTCTCCCCCAGGAAAGC | + |
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Preference number: 6 (lower is better) Translates to: FQTTYRMILNIT*HKKFDILPQES Trigger: GCTTTCCTGGGGGAGAATATCAAACTTTTTGTGTCAGGTGATGTTCAATATCATCCGATAAGTGGTTTGGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000594261.5 |
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| CDS CCA 72 bp | AATAAATATATTATGCTGTTCCCTTTGAGTATATCGTaGATGAGTAGGGTACAGTCTTCTTCATCAAGATTC | + |
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Preference number: 6 (lower is better) Translates to: NKYIMLFPLSIS*MSRVQSSSSRF Trigger: GAATCTTGATGAAGAAGACTGTACCCTACTCATCCACGATATACTCAAAGGGAACAGCATAATATATTTATT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000594261.5 ENST00000600813.1 |
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