Pregenerated sensors for LINC01870 (Homo sapiens)
Ensembl gene IDs: ENSG00000223826Ensembl transcript IDs: ENST00000427042.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGCAAACTGCTTAACTTCTCGAGGGCTCCATTTCTTTATTTTGTCTaGAGATGCTGTAGTGAAATTCGTTTCACGGTGGGGATAGTACCA | + |
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Preference number: 5 (lower is better) Translates to: GKLLNFSRAPFLYFV*RCCSEIRFTVGIVP Trigger: TGGTACTATCCCCACCGTGAAACGAATTTCACTACAGCATCTCCAGACAAAATAAAGAAATGGAGCCCTCGAGAAGTTAAGCAGTTTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000427042.1 |
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| CDS CCA 90 bp | CATTACTGGCAAAGCTGCTGTCTTCAGGAAGAAGAGTTGCCTTTGTaGGATTTGAGGAATTCTCTTCCTCCTGTGGGAAGTAAAAGGATT | + |
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Preference number: 5 (lower is better) Translates to: HYWQSCCLQEEELPL*DLRNSLPPVGSKRI Trigger: AATCCTTTTACTTCCCACAGGAGGAAGAGAATTCCTCAAATCCCACAAAGGCAACTCTTCTTCCTGAAGACAGCAGCTTTGCCAGTAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427042.1 |
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| CDS TCA 90 bp | TTTAGGCAGGTCACAAATTTTGTTGCAATACAAATTGCAGCTGTATaGTCTTGGGCAAACTGCTTAACTTCTCGAGGGCTCCATTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: FRQVTNFVAIQIAAV*SWANCLTSRGLHFF Trigger: AAAGAAATGGAGCCCTCGAGAAGTTAAGCAGTTTGCCCAAGATCATACAGCTGCAATTTGTATTGCAACAAAATTTGTGACCTGCCTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427042.1 |
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| CDS CAA 72 bp | TGGCAAAGCTGCTGTCTTCAGGAAGAAGAGTTGCCTTaGTGGGATTTGAGGAATTCTCTTCCTCCTGTGGGA | + |
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Preference number: 6 (lower is better) Translates to: WQSCCLQEEELP*WDLRNSLPPVG Trigger: TCCCACAGGAGGAAGAGAATTCCTCAAATCCCACAAAGGCAACTCTTCTTCCTGAAGACAGCAGCTTTGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427042.1 |
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| CDS CAA 90 bp | TGTTGCCCTCATTACTGGCAAAGCTGCTGTCTTCAGGAAGAAGAGTaGCCTTTGTGGGATTTGAGGAATTCTCTTCCTCCTGTGGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: CCPHYWQSCCLQEEE*PLWDLRNSLPPVGS Trigger: ACTTCCCACAGGAGGAAGAGAATTCCTCAAATCCCACAAAGGCAACTCTTCTTCCTGAAGACAGCAGCTTTGCCAGTAATGAGGGCAACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427042.1 |
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| CDS CAA 90 bp | CCTCATTACTGGCAAAGCTGCTGTCTTCAGGAAGAAGAGTTGCCTTaGTGGGATTTGAGGAATTCTCTTCCTCCTGTGGGAAGTAAAAGG | + |
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Preference number: 6 (lower is better) Translates to: PHYWQSCCLQEEELP*WDLRNSLPPVGSKR Trigger: CCTTTTACTTCCCACAGGAGGAAGAGAATTCCTCAAATCCCACAAAGGCAACTCTTCTTCCTGAAGACAGCAGCTTTGCCAGTAATGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427042.1 |
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| CDS CCA 72 bp | CAAAGCTGCTGTCTTCAGGAAGAAGAGTTGCCTTTGTaGGATTTGAGGAATTCTCTTCCTCCTGTGGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: QSCCLQEEELPL*DLRNSLPPVGS Trigger: ACTTCCCACAGGAGGAAGAGAATTCCTCAAATCCCACAAAGGCAACTCTTCTTCCTGAAGACAGCAGCTTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427042.1 |
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| CDS GCA 72 bp | CTCTTCCTCCTGTGGGAAGTAAAAGGATTCCTCAGGTaGGTGGCCATGTCACTATATTCATTTTTGGTAGAT | + |
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Preference number: 6 (lower is better) Translates to: LFLLWEVKGFLR*VAMSLYSFLVD Trigger: ATCTACCAAAAATGAATATAGTGACATGGCCACGCACCTGAGGAATCCTTTTACTTCCCACAGGAGGAAGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000427042.1 |
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| CDS CCA 72 bp | CTTAACTTCTCGAGGGCTCCATTTCTTTATTTTGTCTaGAGATGCTGTAGTGAAATTCGTTTCACGGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: LNFSRAPFLYFV*RCCSEIRFTVG Trigger: CCCCACCGTGAAACGAATTTCACTACAGCATCTCCAGACAAAATAAAGAAATGGAGCCCTCGAGAAGTTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427042.1 |
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| CDS CAA 72 bp | AACTGCTTAACTTCTCGAGGGCTCCATTTCTTTATTTaGTCTGGAGATGCTGTAGTGAAATTCGTTTCACGG | + |
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Preference number: 6 (lower is better) Translates to: NCLTSRGLHFFI*SGDAVVKFVSR Trigger: CCGTGAAACGAATTTCACTACAGCATCTCCAGACAAAATAAAGAAATGGAGCCCTCGAGAAGTTAAGCAGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427042.1 |
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| CDS CAA 72 bp | AAATTTTGTTGCAATACAAATTGCAGCTGTATGATCTaGGGCAAACTGCTTAACTTCTCGAGGGCTCCATTT | + |
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Preference number: 6 (lower is better) Translates to: KFCCNTNCSCMI*GKLLNFSRAPF Trigger: AAATGGAGCCCTCGAGAAGTTAAGCAGTTTGCCCAAGATCATACAGCTGCAATTTGTATTGCAACAAAATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000427042.1 |
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| CDS CAA 72 bp | AATGATGGTGAAAATTTAGGCAGGTCACAAATTTTGTaGCAATACAAATTGCAGCTGTATGATCTTGGGCAA | + |
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Preference number: 6 (lower is better) Translates to: NDGENLGRSQIL*QYKLQLYDLGQ Trigger: TTGCCCAAGATCATACAGCTGCAATTTGTATTGCAACAAAATTTGTGACCTGCCTAAATTTTCACCATCATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000427042.1 |
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