Pregenerated sensors for LINC01858 (Homo sapiens)
Ensembl gene IDs: ENSG00000261615Ensembl transcript IDs: ENST00000564534.1, ENST00000593985.5, ENST00000653153.1, ENST00000654127.1, ENST00000668302.1
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTGAGGGCAGGCCCAAGGTGCCCAGCAACATGTTACAATCTCTTCTaGAGGCAGAACCTAGGTTTTGGACCCAGCAACATGTCACAATGG | + |
|
Preference number: 5 (lower is better) Translates to: LRAGPRCPATCYNLF*RQNLGFGPSNMSQW Trigger: CCATTGTGACATGTTGCTGGGTCCAAAACCTAGGTTCTGCCTGCAGAAGAGATTGTAACATGTTGCTGGGCACCTTGGGCCTGCCCTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS CCA 90 bp | AAATCACACGTGTGGATAGGGCATGCACAGGAGAGTTACGTCATCTaGGTGCTGGGCCAGGGATATGTCACAATCTTCCCTGAGAACAGG | + |
|
Preference number: 5 (lower is better) Translates to: KSHVWIGHAQESYVI*VLGQGYVTIFPENR Trigger: CCTGTTCTCAGGGAAGATTGTGACATATCCCTGGCCCAGCACCCAGATGACGTAACTCTCCTGTGCATGCCCTATCCACACGTGTGATTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653153.1 |
||
| CDS TCA 90 bp | TTACGTCATCTGGGTGCTGGGCCAGGGATATGTCACAATCTTCCCTaGGAACAGGAATCAGGCAGAAGTGTTATCACCTGGGTGGTTGGT | + |
|
Preference number: 5 (lower is better) Translates to: LRHLGAGPGICHNLP*EQESGRSVITWVVG Trigger: ACCAACCACCCAGGTGATAACACTTCTGCCTGATTCCTGTTCTCAGGGAAGATTGTGACATATCCCTGGCCCAGCACCCAGATGACGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653153.1 |
||
| CDS GCA 90 bp | TTACTCAGGTGCAAGGCAGAGGTGTATGTCAAAATCACACCTTGTTaGTGGGCCCAGCAATATGTCACAATGCCTTTTGAGGTCCAGGCC | + |
|
Preference number: 5 (lower is better) Translates to: LLRCKAEVYVKITPC*WAQQYVTMPFEVQA Trigger: GGCCTGGACCTCAAAAGGCATTGTGACATATTGCTGGGCCCAGCAACAAGGTGTGATTTTGACATACACCTCTGCCTTGCACCTGAGTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654127.1 |
||
| CDS CCA 90 bp | TTCTGCAGGCAGAACCTAGGTTTTGGACCCAGCAACATGTCACAATaGCCCATGTTGGCAGAGCACAGGCAAGAGAGTCACATAACTTGT | + |
|
Preference number: 5 (lower is better) Translates to: FCRQNLGFGPSNMSQ*PMLAEHRQESHITC Trigger: ACAAGTTATGTGACTCTCTTGCCTGTGCTCTGCCAACATGGGCCATTGTGACATGTTGCTGGGTCCAAAACCTAGGTTCTGCCTGCAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS CCA 90 bp | CCCTGTGGTTCTACGTCCAGATATGACAGTCAACATCTCTCCAATTaGTTGAGTCCAGATAGGAGAGTCCTCACCTTCCTACAAGCTGGG | + |
|
Preference number: 5 (lower is better) Translates to: PCGSTSRYDSQHLSN*LSPDRRVLTFLQAG Trigger: CCCAGCTTGTAGGAAGGTGAGGACTCTCCTATCTGGACTCAACCAATTGGAGAGATGTTGACTGTCATATCTGGACGTAGAACCACAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS GCA 90 bp | AGGCAGGAGAGTAAACTATACAGAGGCATATGGCACAATCACCCTTaGGTATACAGAGGCATATGGCACAATCGTGCTTGCAGGAAGGTC | + |
|
Preference number: 5 (lower is better) Translates to: RQESKLYRGIWHNHP*VYRGIWHNRACRKV Trigger: GACCTTCCTGCAAGCACGATTGTGCCATATGCCTCTGTATACGCAAGGGTGATTGTGCCATATGCCTCTGTATAGTTTACTCTCCTGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653153.1 |
||
| CDS CCA 90 bp | AATCTTCCGAGTGGGCAGAATGCAGAAGTAGACAGTTTCATCTCCTaGGTGATGGATACAGAAATATGTCACAAGGCCCCCTGGGCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: NLPSGQNAEVDSFIS*VMDTEICHKAPWAL Trigger: CAAAGCCCAGGGGGCCTTGTGACATATTTCTGTATCCATCACCCAGGAGATGAAACTGTCTACTTCTGCATTCTGCCCACTCGGAAGATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS TCA 90 bp | GTGGTTCTACGTCCAGATATGACAGTCAACATCTCTCCAATTGGTTaGGTCCAGATAGGAGAGTCCTCACCTTCCTACAAGCTGGGTTTA | + |
|
Preference number: 5 (lower is better) Translates to: VVLRPDMTVNISPIG*VQIGESSPSYKLGL Trigger: TAAACCCAGCTTGTAGGAAGGTGAGGACTCTCCTATCTGGACTCAACCAATTGGAGAGATGTTGACTGTCATATCTGGACGTAGAACCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS TCA 90 bp | GGCATGAGAGGAGAGTCACATCAAGTAAGTACTGGGCCACGTACATaGTGTATCACAATAACCCATATAGACAGGTCCCAGGAAGATATC | + |
|
Preference number: 5 (lower is better) Translates to: GMRGESHQVSTGPRT*CITITHIDRSQEDI Trigger: GATATCTTCCTGGGACCTGTCTATATGGGTTATTGTGATACATCATGTACGTGGCCCAGTACTTACTTGATGTGACTCTCCTCTCATGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000564534.1 ENST00000668302.1 |
||
| CDS CCA 90 bp | GCATCACCTAGTTTCTGGTCCAGCGATATGTCACAATTTCATCTGTaGGCTAAATCCAGGCAGGAGAGTAAACTATACAGAGGCATATGG | + |
|
Preference number: 5 (lower is better) Translates to: ASPSFWSSDMSQFHL*AKSRQESKLYRGIW Trigger: CCATATGCCTCTGTATAGTTTACTCTCCTGCCTGGATTTAGCCCACAGATGAAATTGTGACATATCGCTGGACCAGAAACTAGGTGATGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653153.1 |
||
| CDS TCA 90 bp | GCCTTGGATGTTGGATCTAAGTGTGTGAGTCACAGTCTCAATGGTTaGCAGAATTTTTGCAAGACAGCCACAGTTTATTCTGCAGACTTG | + |
|
Preference number: 5 (lower is better) Translates to: ALDVGSKCVSHSLNG*QNFCKTATVYSADL Trigger: CAAGTCTGCAGAATAAACTGTGGCTGTCTTGCAAAAATTCTGTCAACCATTGAGACTGTGACTCACACACTTAGATCCAACATCCAAGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS TCA 90 bp | CATAACCTAGATATGGGGCTCAGCTTTATGTTCCAATCACCCCACTaGAAAGGGCCCAAGAATGAAAGAAGAGTCATATCACAATTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: HNLDMGLSFMFQSPH*KGPKNERRVISQFP Trigger: TGGGAATTGTGATATGACTCTTCTTTCATTCTTGGGCCCTTTTCAGTGGGGTGATTGGAACATAAAGCTGAGCCCCATATCTAGGTTATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653153.1 |
||
| CDS GCA 90 bp | TTTGCCCATAGGAGAAATTGCAATGGGTCAAGAGATATGTTACAATaGTTCCTGTGGTCAGGGTTCAGGCAGAAAACTCACATAATCTTG | + |
|
Preference number: 5 (lower is better) Translates to: FAHRRNCNGSRDMLQ*FLWSGFRQKTHIIL Trigger: CAAGATTATGTGAGTTTTCTGCCTGAACCCTGACCACAGGAAGCATTGTAACATATCTCTTGACCCATTGCAATTTCTCCTATGGGCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000564534.1 ENST00000653153.1 ENST00000654127.1 |
||
| CDS CCA 90 bp | CAGAAGACTCAGGAGTTTATTCATTTCTGTAAGTCTAGCTACAAGTaGCAGTATCTCTCCTATTGGCTGTTTTGTGGCGTAAGTGTCATC | + |
|
Preference number: 5 (lower is better) Translates to: QKTQEFIHFCKSSYK*QYLSYWLFCGVSVI Trigger: GATGACACTTACGCCACAAAACAGCCAATAGGAGAGATACTGCCACTTGTAGCTAGACTTACAGAAATGAATAAACTCCTGAGTCTTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000593985.5 |
||
| CDS CCA 72 bp | TCTGATGGGCCAAGAGATATGTCACAGTGCCCACTGTaGGCAGGGTCCAGCCAGGAGACGCACATCACCTTG | + |
|
Preference number: 6 (lower is better) Translates to: SDGPRDMSQCPL*AGSSQETHITL Trigger: CAAGGTGATGTGCGTCTCCTGGCTGGACCCTGCCCACAGTGGGCACTGTGACATATCTCTTGGCCCATCAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS CCA 72 bp | CAGGGTCCAGCCAGGAGACGCACATCACCTTGGTGTTaGACCCAGGAATATGTCATAATGCCTTCTGAGGGC | + |
|
Preference number: 6 (lower is better) Translates to: QGPARRRTSPWC*TQEYVIMPSEG Trigger: GCCCTCAGAAGGCATTATGACATATTCCTGGGTCCAACACCAAGGTGATGTGCGTCTCCTGGCTGGACCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS GCA 72 bp | GGGCCCATCACCTCAGTGTTGGACACAGAGATGTGTTaGAATACACAACGTATACAGGGCCCAGGCAGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: GPITSVLDTEMC*NTQRIQGPGSR Trigger: TCTGCTGCCTGGGCCCTGTATACGTTGTGTATTGCAACACATCTCTGTGTCCAACACTGAGGTGATGGGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653153.1 |
||
| CDS CAA 72 bp | AGGGCCCATCACCTCAGTGTTGGACACAGAGATGTGTaGCAATACACAACGTATACAGGGCCCAGGCAGCAG | + |
|
Preference number: 6 (lower is better) Translates to: RAHHLSVGHRDV*QYTTYTGPRQQ Trigger: CTGCTGCCTGGGCCCTGTATACGTTGTGTATTGCAACACATCTCTGTGTCCAACACTGAGGTGATGGGCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653153.1 |
||
| CDS CAA 90 bp | GAACGGCATTCACGTGTGATTCAGGACCTCACCAGTGGGCTCTGGTaGCTGGGCCTAATGATTGTCACAATCTTCCGAGTGGGCAGAATG | + |
|
Preference number: 6 (lower is better) Translates to: ERHSRVIQDLTSGLW*LGLMIVTIFRVGRM Trigger: CATTCTGCCCACTCGGAAGATTGTGACAATCATTAGGCCCAGCAACCAGAGCCCACTGGTGAGGTCCTGAATCACACGTGAATGCCGTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS TCA 72 bp | CTGGGTGCTGGGCCAGGGATATGTCACAATCTTCCCTaGGAACAGGAATCAGGCAGAAGTGTTATCACCTGG | + |
|
Preference number: 6 (lower is better) Translates to: LGAGPGICHNLP*EQESGRSVITW Trigger: CCAGGTGATAACACTTCTGCCTGATTCCTGTTCTCAGGGAAGATTGTGACATATCCCTGGCCCAGCACCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653153.1 |
||
| CDS GCA 72 bp | GGCCCAAGGTGCCCAGCAACATGTTACAATCTCTTCTaGAGGCAGAACCTAGGTTTTGGACCCAGCAACATG | + |
|
Preference number: 6 (lower is better) Translates to: GPRCPATCYNLF*RQNLGFGPSNM Trigger: CATGTTGCTGGGTCCAAAACCTAGGTTCTGCCTGCAGAAGAGATTGTAACATGTTGCTGGGCACCTTGGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS CCA 72 bp | CAGAACCTAGGTTTTGGACCCAGCAACATGTCACAATaGCCCATGTTGGCAGAGCACAGGCAAGAGAGTCAC | + |
|
Preference number: 6 (lower is better) Translates to: QNLGFGPSNMSQ*PMLAEHRQESH Trigger: GTGACTCTCTTGCCTGTGCTCTGCCAACATGGGCCATTGTGACATGTTGCTGGGTCCAAAACCTAGGTTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS CAA 72 bp | TCACGTGTGATTCAGGACCTCACCAGTGGGCTCTGGTaGCTGGGCCTAATGATTGTCACAATCTTCCGAGTG | + |
|
Preference number: 6 (lower is better) Translates to: SRVIQDLTSGLW*LGLMIVTIFRV Trigger: CACTCGGAAGATTGTGACAATCATTAGGCCCAGCAACCAGAGCCCACTGGTGAGGTCCTGAATCACACGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS CAA 90 bp | CAGAACCTAGGTTTTGGACCCAGCAACATGTCACAATGGCCCATGTaGGCAGAGCACAGGCAAGAGAGTCACATAACTTGTAGGGGACAG | + |
|
Preference number: 6 (lower is better) Translates to: QNLGFGPSNMSQWPM*AEHRQESHITCRGQ Trigger: CTGTCCCCTACAAGTTATGTGACTCTCTTGCCTGTGCTCTGCCAACATGGGCCATTGTGACATGTTGCTGGGTCCAAAACCTAGGTTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS TCA 72 bp | TTGGTGTTGGACCCAGGAATATGTCATAATGCCTTCTaGGGGCAGGCCCAAGGTGCCCAGCAACATGTTACA | + |
|
Preference number: 6 (lower is better) Translates to: LVLDPGICHNAF*GQAQGAQQHVT Trigger: TGTAACATGTTGCTGGGCACCTTGGGCCTGCCCTCAGAAGGCATTATGACATATTCCTGGGTCCAACACCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS TCA 72 bp | ACAGTGAAAATTCCAACTGTGAACGGCATTCACGTGTaGTTCAGGACCTCACCAGTGGGCTCTGGTTGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: TVKIPTVNGIHV*FRTSPVGSGCW Trigger: CCAGCAACCAGAGCCCACTGGTGAGGTCCTGAATCACACGTGAATGCCGTTCACAGTTGGAATTTTCACTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS CCA 72 bp | CATTCACGTGTGATTCAGGACCTCACCAGTGGGCTCTaGTTGCTGGGCCTAATGATTGTCACAATCTTCCGA | + |
|
Preference number: 6 (lower is better) Translates to: HSRVIQDLTSGL*LLGLMIVTIFR Trigger: TCGGAAGATTGTGACAATCATTAGGCCCAGCAACCAGAGCCCACTGGTGAGGTCCTGAATCACACGTGAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS CAA 72 bp | GGTTTTGGACCCAGCAACATGTCACAATGGCCCATGTaGGCAGAGCACAGGCAAGAGAGTCACATAACTTGT | + |
|
Preference number: 6 (lower is better) Translates to: GFGPSNMSQWPM*AEHRQESHITC Trigger: ACAAGTTATGTGACTCTCTTGCCTGTGCTCTGCCAACATGGGCCATTGTGACATGTTGCTGGGTCCAAAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS CCA 72 bp | AGTGGGCAGAATGCAGAAGTAGACAGTTTCATCTCCTaGGTGATGGATACAGAAATATGTCACAAGGCCCCC | + |
|
Preference number: 6 (lower is better) Translates to: SGQNAEVDSFIS*VMDTEICHKAP Trigger: GGGGGCCTTGTGACATATTTCTGTATCCATCACCCAGGAGATGAAACTGTCTACTTCTGCATTCTGCCCACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS CCA 72 bp | GATCAACAATTCTGTACATATCCTGCTTCTAGGTGCTaGGTCCAGCAGTGTGGCACAATCCTATCTGTAGGC | + |
|
Preference number: 6 (lower is better) Translates to: DQQFCTYPASRC*VQQCGTILSVG Trigger: GCCTACAGATAGGATTGTGCCACACTGCTGGACCCAGCACCTAGAAGCAGGATATGTACAGAATTGTTGATC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653153.1 |
||
| CDS CAA 90 bp | TGTGGTTCTACGTCCAGATATGACAGTCAACATCTCTCCAATTGGTaGAGTCCAGATAGGAGAGTCCTCACCTTCCTACAAGCTGGGTTT | + |
|
Preference number: 6 (lower is better) Translates to: CGSTSRYDSQHLSNW*SPDRRVLTFLQAGF Trigger: AAACCCAGCTTGTAGGAAGGTGAGGACTCTCCTATCTGGACTCAACCAATTGGAGAGATGTTGACTGTCATATCTGGACGTAGAACCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS TCA 72 bp | CGTCCAGATATGACAGTCAACATCTCTCCAATTGGTTaGGTCCAGATAGGAGAGTCCTCACCTTCCTACAAG | + |
|
Preference number: 6 (lower is better) Translates to: RPDMTVNISPIG*VQIGESSPSYK Trigger: CTTGTAGGAAGGTGAGGACTCTCCTATCTGGACTCAACCAATTGGAGAGATGTTGACTGTCATATCTGGACG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS TCA 72 bp | CACTGCGCCCAGCCTTGGATGTTGGATCTAAGTGTGTaGGTCACAGTCTCAATGGTTGACAGAATTTTTGCA | + |
|
Preference number: 6 (lower is better) Translates to: HCAQPWMLDLSV*VTVSMVDRIFA Trigger: TGCAAAAATTCTGTCAACCATTGAGACTGTGACTCACACACTTAGATCCAACATCCAAGGCTGGGCGCAGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS GCA 72 bp | TCACACCTTGTTGCTGGGCCCAGCAATATGTCACAATaGCTTTTGAGGTCCAGGCCAAGACAAAACAGTAAT | + |
|
Preference number: 6 (lower is better) Translates to: SHLVAGPSNMSQ*LLRSRPRQNSN Trigger: ATTACTGTTTTGTCTTGGCCTGGACCTCAAAAGGCATTGTGACATATTGCTGGGCCCAGCAACAAGGTGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654127.1 |
||
| CDS CAA 72 bp | CTGTGGTCAGGGTTCAGGCAGAAAACTCACATAATCTaGGTGCTGGACCCAGCAGTATGTTTCAGTGTTTTC | + |
|
Preference number: 6 (lower is better) Translates to: LWSGFRQKTHII*VLDPAVCFSVF Trigger: GAAAACACTGAAACATACTGCTGGGTCCAGCACCAAGATTATGTGAGTTTTCTGCCTGAACCCTGACCACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000564534.1 ENST00000653153.1 ENST00000654127.1 |
||
| CDS CAA 90 bp | TCCTGGGTGATGGATACAGAAATATGTCACAAGGCCCCCTGGGCTTaGCCCATAGGAGAAATTGCAATGGGTCAAGAGATATGTTACAAT | + |
|
Preference number: 6 (lower is better) Translates to: SWVMDTEICHKAPWA*PIGEIAMGQEICYN Trigger: ATTGTAACATATCTCTTGACCCATTGCAATTTCTCCTATGGGCAAAGCCCAGGGGGCCTTGTGACATATTTCTGTATCCATCACCCAGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS CAA 90 bp | AAAGATGTGTTTAATATATCTGTGGGAGGGCCCATCACCTCAGTGTaGGACACAGAGATGTGTTGCAATACACAACGTATACAGGGCCCA | + |
|
Preference number: 6 (lower is better) Translates to: KDVFNISVGGPITSV*DTEMCCNTQRIQGP Trigger: TGGGCCCTGTATACGTTGTGTATTGCAACACATCTCTGTGTCCAACACTGAGGTGATGGGCCCTCCCACAGATATATTAAACACATCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653153.1 |
||
| CDS TCA 72 bp | AGAGTCACTAGCCCACCTGTGTGCTGTGTTCTCTTATaGCACTCTCTGTGTCACCTGAAGGCTTTATACAAT | + |
|
Preference number: 6 (lower is better) Translates to: RVTSPPVCCVLL*HSLCHLKALYN Trigger: ATTGTATAAAGCCTTCAGGTGACACAGAGAGTGTCATAAGAGAACACAGCACACAGGTGGGCTAGTGACTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS TCA 72 bp | TTGTTGCTGGGCCCAGCAATATGTCACAATGCCTTTTaGGGTCCAGGCCAAGACAAAACAGTAATGTCACAT | + |
|
Preference number: 6 (lower is better) Translates to: LLLGPAICHNAF*GPGQDKTVMSH Trigger: ATGTGACATTACTGTTTTGTCTTGGCCTGGACCTCAAAAGGCATTGTGACATATTGCTGGGCCCAGCAACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654127.1 |
||
| CDS GCA 72 bp | AGTAAACTATACAGAGGCATATGGCACAATCACCCTTaGGTATACAGAGGCATATGGCACAATCGTGCTTGC | + |
|
Preference number: 6 (lower is better) Translates to: SKLYRGIWHNHP*VYRGIWHNRAC Trigger: GCAAGCACGATTGTGCCATATGCCTCTGTATACGCAAGGGTGATTGTGCCATATGCCTCTGTATAGTTTACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653153.1 |
||
| CDS CCA 72 bp | TCTACGTCCAGATATGACAGTCAACATCTCTCCAATTaGTTGAGTCCAGATAGGAGAGTCCTCACCTTCCTA | + |
|
Preference number: 6 (lower is better) Translates to: STSRYDSQHLSN*LSPDRRVLTFL Trigger: TAGGAAGGTGAGGACTCTCCTATCTGGACTCAACCAATTGGAGAGATGTTGACTGTCATATCTGGACGTAGA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS CAA 72 bp | ACGTCCAGATATGACAGTCAACATCTCTCCAATTGGTaGAGTCCAGATAGGAGAGTCCTCACCTTCCTACAA | + |
|
Preference number: 6 (lower is better) Translates to: TSRYDSQHLSNW*SPDRRVLTFLQ Trigger: TTGTAGGAAGGTGAGGACTCTCCTATCTGGACTCAACCAATTGGAGAGATGTTGACTGTCATATCTGGACGT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS TCA 72 bp | AGGCTTTATACAATATGCAAGAATGGTGATCCTCTGTaGCCTTCATACAGGAAGGAGATCCAGAGTCTTCCC | + |
|
Preference number: 6 (lower is better) Translates to: RLYTICKNGDPL*PSYRKEIQSLP Trigger: GGGAAGACTCTGGATCTCCTTCCTGTATGAAGGTCACAGAGGATCACCATTCTTGCATATTGTATAAAGCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS GCA 72 bp | AGGAGAAATTGCAATGGGTCAAGAGATATGTTACAATaGTTCCTGTGGTCAGGGTTCAGGCAGAAAACTCAC | + |
|
Preference number: 6 (lower is better) Translates to: RRNCNGSRDMLQ*FLWSGFRQKTH Trigger: GTGAGTTTTCTGCCTGAACCCTGACCACAGGAAGCATTGTAACATATCTCTTGACCCATTGCAATTTCTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000564534.1 ENST00000653153.1 ENST00000654127.1 |
||
| CDS TCA 72 bp | TATGTTCCAATCACCCCACTGAAAAGGGCCCAAGAATaGAAGAAGAGTCATATCACAATTCCCACTGTAGAC | + |
|
Preference number: 6 (lower is better) Translates to: YVPITPLKRAQE*KKSHITIPTVD Trigger: GTCTACAGTGGGAATTGTGATATGACTCTTCTTTCATTCTTGGGCCCTTTTCAGTGGGGTGATTGGAACATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653153.1 |
||
| CDS TCA 72 bp | ATATGTCTCAATCTTTCCCTTTGGCAGGGTCCAGGGTaGAGAGAGGATTCACACAGCTTTTTGTTGTTGTTT | + |
|
Preference number: 6 (lower is better) Translates to: ICLNLSLWQGPG*REDSHSFLLLF Trigger: AAACAACAACAAAAAGCTGTGTGAATCCTCTCTTCACCCTGGACCCTGCCAAAGGGAAAGATTGAGACATAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000668302.1 |
||
| CDS CCA 72 bp | AGTTTCTGGTCCAGCGATATGTCACAATTTCATCTGTaGGCTAAATCCAGGCAGGAGAGTAAACTATACAGA | + |
|
Preference number: 6 (lower is better) Translates to: SFWSSDMSQFHL*AKSRQESKLYR Trigger: TCTGTATAGTTTACTCTCCTGCCTGGATTTAGCCCACAGATGAAATTGTGACATATCGCTGGACCAGAAACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653153.1 |
||
| CDS CAA 72 bp | AATTTTTGCAAGACAGCCACAGTTTATTCTGCAGACTaGTCCTTTCAGTGCAGTTACAGCCTCACATGTGTG | + |
|
Preference number: 6 (lower is better) Translates to: NFCKTATVYSAD*SFQCSYSLTCV Trigger: CACACATGTGAGGCTGTAACTGCACTGAAAGGACAAGTCTGCAGAATAAACTGTGGCTGTCTTGCAAAAATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS CAA 72 bp | GTGTGTGAGTCACAGTCTCAATGGTTGACAGAATTTTaGCAAGACAGCCACAGTTTATTCTGCAGACTTGTC | + |
|
Preference number: 6 (lower is better) Translates to: VCESQSQWLTEF*QDSHSLFCRLV Trigger: GACAAGTCTGCAGAATAAACTGTGGCTGTCTTGCAAAAATTCTGTCAACCATTGAGACTGTGACTCACACAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS CAA 72 bp | TTTAATATATCTGTGGGAGGGCCCATCACCTCAGTGTaGGACACAGAGATGTGTTGCAATACACAACGTATA | + |
|
Preference number: 6 (lower is better) Translates to: FNISVGGPITSV*DTEMCCNTQRI Trigger: TATACGTTGTGTATTGCAACACATCTCTGTGTCCAACACTGAGGTGATGGGCCCTCCCACAGATATATTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653153.1 |
||
| CDS TCA 72 bp | TGTGCTGTGTTCTCTTATGACACTCTCTGTGTCACCTaGAGGCTTTATACAATATGCAAGAATGGTGATCCT | + |
|
Preference number: 6 (lower is better) Translates to: CAVFSYDTLCVT*RLYTICKNGDP Trigger: AGGATCACCATTCTTGCATATTGTATAAAGCCTTCAGGTGACACAGAGAGTGTCATAAGAGAACACAGCACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS CCA 72 bp | CAGGAGTTTATTCATTTCTGTAAGTCTAGCTACAAGTaGCAGTATCTCTCCTATTGGCTGTTTTGTGGCGTA | + |
|
Preference number: 6 (lower is better) Translates to: QEFIHFCKSSYK*QYLSYWLFCGV Trigger: TACGCCACAAAACAGCCAATAGGAGAGATACTGCCACTTGTAGCTAGACTTACAGAAATGAATAAACTCCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000593985.5 |
||
| CDS CAA 72 bp | AGGTCCAGGCCAAGACAAAACAGTAATGTCACATTGTaGTTAAGCTCCACAAGATGTCTTAATATCTCTCGC | + |
|
Preference number: 6 (lower is better) Translates to: RSRPRQNSNVTL*LSSTRCLNISR Trigger: GCGAGAGATATTAAGACATCTTGTGGAGCTTAACAACAATGTGACATTACTGTTTTGTCTTGGCCTGGACCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654127.1 |
||
| CDS TCA 72 bp | GTTGGATCTAAGTGTGTGAGTCACAGTCTCAATGGTTaGCAGAATTTTTGCAAGACAGCCACAGTTTATTCT | + |
|
Preference number: 6 (lower is better) Translates to: VGSKCVSHSLNG*QNFCKTATVYS Trigger: AGAATAAACTGTGGCTGTCTTGCAAAAATTCTGTCAACCATTGAGACTGTGACTCACACACTTAGATCCAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564534.1 |
||
| CDS CAA 72 bp | TTGAGGTCCAGGCCAAGACAAAACAGTAATGTCACATaGTTGTTAAGCTCCACAAGATGTCTTAATATCTCT | + |
|
Preference number: 6 (lower is better) Translates to: LRSRPRQNSNVT*LLSSTRCLNIS Trigger: AGAGATATTAAGACATCTTGTGGAGCTTAACAACAATGTGACATTACTGTTTTGTCTTGGCCTGGACCTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654127.1 |
||