Pregenerated sensors for LINC01856 (Homo sapiens)
Ensembl gene IDs: ENSG00000237574Ensembl transcript IDs: ENST00000450840.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ATTTTAAGAATTAGACACACCAATGCAACCAGCACCCAGACCAAATaGCAGAACACTACCAGCAGCTCAGAAACCCCCTCGTTTCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: ILRIRHTNATSTQTK*QNTTSSSETPSFLL Trigger: CAAGAGAAACGAGGGGGTTTCTGAGCTGCTGGTAGTGTTCTGTCATTTGGTCTGGGTGCTGGTTGCATTGGTGTGTCTAATTCTTAAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000450840.1 |
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| CDS GCA 90 bp | TTTGCCCTTCCCTTTTTATTTGTAGTTCTCTCTTTGACAGTGAGATaGCTCCCTCCCACTAAATACAATGTATTTACTTATTTGCTCAAT | + |
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Preference number: 5 (lower is better) Translates to: FALPFLFVVLSLTVR*LPPTKYNVFTYLLN Trigger: ATTGAGCAAATAAGTAAATACATTGTATTTAGTGGGAGGGAGGCATCTCACTGTCAAAGAGAGAACTACAAATAAAAAGGGAAGGGCAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000450840.1 |
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| CDS TCA 72 bp | ATTAGACACACCAATGCAACCAGCACCCAGACCAAATaGCAGAACACTACCAGCAGCTCAGAAACCCCCTCG | + |
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Preference number: 6 (lower is better) Translates to: IRHTNATSTQTK*QNTTSSSETPS Trigger: CGAGGGGGTTTCTGAGCTGCTGGTAGTGTTCTGTCATTTGGTCTGGGTGCTGGTTGCATTGGTGTGTCTAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000450840.1 |
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| CDS GCA 72 bp | ACACTACCAGCAGCTCAGAAACCCCCTCGTTTCTCTTaGAGAAAATTGATACTGAGTTCTTGTGACATGGAT | + |
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Preference number: 6 (lower is better) Translates to: TLPAAQKPPRFS*RKLILSSCDMD Trigger: ATCCATGTCACAAGAACTCAGTATCAATTTTCTGCAAGAGAAACGAGGGGGTTTCTGAGCTGCTGGTAGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000450840.1 |
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| CDS CAA 72 bp | CAAACAAACACAAGGGGTGACTTGAAGATGCTTACATaGGCCATACCTGGGACAGTTGGAACAATGATACAA | + |
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Preference number: 6 (lower is better) Translates to: QTNTRGDLKMLT*AIPGTVGTMIQ Trigger: TTGTATCATTGTTCCAACTGTCCCAGGTATGGCCAATGTAAGCATCTTCAAGTCACCCCTTGTGTTTGTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450840.1 |
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| CDS CAA 72 bp | AGAATAAGGGCATTTCAAACAAACACAAGGGGTGACTaGAAGATGCTTACATTGGCCATACCTGGGACAGTT | + |
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Preference number: 6 (lower is better) Translates to: RIRAFQTNTRGD*KMLTLAIPGTV Trigger: AACTGTCCCAGGTATGGCCAATGTAAGCATCTTCAAGTCACCCCTTGTGTTTGTTTGAAATGCCCTTATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450840.1 |
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| CDS CAA 90 bp | GCTCAAAATAGAATAAGGGCATTTCAAACAAACACAAGGGGTGACTaGAAGATGCTTACATTGGCCATACCTGGGACAGTTGGAACAATG | + |
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Preference number: 6 (lower is better) Translates to: AQNRIRAFQTNTRGD*KMLTLAIPGTVGTM Trigger: CATTGTTCCAACTGTCCCAGGTATGGCCAATGTAAGCATCTTCAAGTCACCCCTTGTGTTTGTTTGAAATGCCCTTATTCTATTTTGAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450840.1 |
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| CDS CAA 90 bp | AATAGGGTTCACTTTGCCCTTCCCTTTTTATTTGTAGTTCTCTCTTaGACAGTGAGATGCCTCCCTCCCACTAAATACAATGTATTTACT | + |
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Preference number: 6 (lower is better) Translates to: NRVHFALPFLFVVLS*TVRCLPPTKYNVFT Trigger: AGTAAATACATTGTATTTAGTGGGAGGGAGGCATCTCACTGTCAAAGAGAGAACTACAAATAAAAAGGGAAGGGCAAAGTGAACCCTATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000450840.1 |
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| CDS CAA 90 bp | ACAAAACCTCATTCTCATTGTGAGAAAGCACTAGACAAACTCAAGTaGGAGGACATTCTACAAAATAATTGGCCAGTACTCTTCAAGAGT | + |
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Preference number: 6 (lower is better) Translates to: TKPHSHCEKALDKLK*EDILQNNWPVLFKS Trigger: ACTCTTGAAGAGTACTGGCCAATTATTTTGTAGAATGTCCTCCAACTTGAGTTTGTCTAGTGCTTTCTCACAATGAGAATGAGGTTTTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450840.1 |
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| CDS GCA 72 bp | CCCTTTTTATTTGTAGTTCTCTCTTTGACAGTGAGATaGCTCCCTCCCACTAAATACAATGTATTTACTTAT | + |
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Preference number: 6 (lower is better) Translates to: PFLFVVLSLTVR*LPPTKYNVFTY Trigger: ATAAGTAAATACATTGTATTTAGTGGGAGGGAGGCATCTCACTGTCAAAGAGAGAACTACAAATAAAAAGGG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000450840.1 |
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| CDS CAA 72 bp | CATGGATTTCTGCTAGGTATATGCCTAGGAATGGAATaGCCAGGTCATATTTATTTCTATATCTGTCAATCT | + |
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Preference number: 6 (lower is better) Translates to: HGFLLGICLGME*PGHIYFYICQS Trigger: AGATTGACAGATATAGAAATAAATATGACCTGGCAATTCCATTCCTAGGCATATACCTAGCAGAAATCCATG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450840.1 |
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| CDS CAA 72 bp | AAATGTCTTTCCGCAATTGTATTTTCATCCATAATGTaGCATGTAGTGGTCGGTCATTCATTCTTTAGTCTG | + |
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Preference number: 6 (lower is better) Translates to: KCLSAIVFSSIM*HVVVGHSFFSL Trigger: CAGACTAAAGAATGAATGACCGACCACTACATGCAACATTATGGATGAAAATACAATTGCGGAAAGACATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450840.1 |
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