Pregenerated sensors for LINC01852 (Homo sapiens)
Ensembl gene IDs: ENSG00000236914Ensembl transcript IDs: ENST00000434223.3, ENST00000559232.2, ENST00000560198.1, ENST00000560819.1, ENST00000657585.1
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGGCCTGAGGCTCATTTCCATTCCTCTCGCATACAGCCTCTGTTGTaGGGGCCGGGCCTGCAGAGGGTAGCCGCGGCTGCCTACGAACAA | + |
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Preference number: 5 (lower is better) Translates to: GPEAHFHSSRIQPLL*GPGLQRVAAAAYEQ Trigger: TTGTTCGTAGGCAGCCGCGGCTACCCTCTGCAGGCCCGGCCCGCACAACAGAGGCTGTATGCGAGAGGAATGGAAATGAGCCTCAGGCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS GCA 90 bp | GGTGTAAGGCGCACCAAAGAGCCTTTCAAAGTAGGAACCCCGGCCTaGAGGTCAGCCTGGATCGTGTCCAAATTGAGTTCCACCCCTGGT | + |
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Preference number: 5 (lower is better) Translates to: GVRRTKEPFKVGTPA*RSAWIVSKLSSTPG Trigger: ACCAGGGGTGGAACTCAATTTGGACACGATCCAGGCTGACCTGCAGGCCGGGGTTCCTACTTTGAAAGGCTCTTTGGTGCGCCTTACACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000434223.3 ENST00000559232.2 ENST00000560198.1 ENST00000657585.1 |
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| CDS GCA 90 bp | GAGGTCTTCTCTTCACGTTTCTGGCTTCTTACTGTAGGCTGCGATTaGACGATTGCACGCTGCACTCTAGCCTGGGAGAGCAGACAGGAC | + |
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Preference number: 5 (lower is better) Translates to: EVFSSRFWLLTVGCD*TIARCTLAWESRQD Trigger: GTCCTGTCTGCTCTCCCAGGCTAGAGTGCAGCGTGCAATCGTGCAATCGCAGCCTACAGTAAGAAGCCAGAAACGTGAAGAGAAGACCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS GCA 90 bp | CAAGGCGAGGTCTTCTCTTCACGTTTCTGGCTTCTTACTGTAGGCTaGGATTGCACGATTGCACGCTGCACTCTAGCCTGGGAGAGCAGA | + |
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Preference number: 5 (lower is better) Translates to: QGEVFSSRFWLLTVG*DCTIARCTLAWESR Trigger: TCTGCTCTCCCAGGCTAGAGTGCAGCGTGCAATCGTGCAATCGCAGCCTACAGTAAGAAGCCAGAAACGTGAAGAGAAGACCTCGCCTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS CCA 90 bp | CCTGCAATGAAATGCGCTTTAATTGCATCAAAGGGTTCTTCTCAATaGGGTTTCAGAGGCGCGAGAGCGGCGTTCCCAGCGAGGGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: PAMKCALIASKGSSQ*GFRGARAAFPARVP Trigger: AGGAACCCTCGCTGGGAACGCCGCTCTCGCGCCTCTGAAACCCCATTGAGAAGAACCCTTTGATGCAATTAAAGCGCATTTCATTGCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000559232.2 ENST00000560198.1 ENST00000657585.1 |
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| CDS GCA 90 bp | CTCTTCACGTTTCTGGCTTCTTACTGTAGGCTGCGATTGCACGATTaGACGCTGCACTCTAGCCTGGGAGAGCAGACAGGACTTTGTCTT | + |
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Preference number: 5 (lower is better) Translates to: LFTFLASYCRLRLHD*TLHSSLGEQTGLCL Trigger: AAGACAAAGTCCTGTCTGCTCTCCCAGGCTAGAGTGCAGCGTGCAATCGTGCAATCGCAGCCTACAGTAAGAAGCCAGAAACGTGAAGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS CCA 90 bp | AGGGGTCATCTGGCAAATCAAGGCGAGGTCTTCTCTTCACGTTTCTaGCTTCTTACTGTAGGCTGCGATTGCACGATTGCACGCTGCACT | + |
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Preference number: 5 (lower is better) Translates to: RGHLANQGEVFSSRF*LLTVGCDCTIARCT Trigger: AGTGCAGCGTGCAATCGTGCAATCGCAGCCTACAGTAAGAAGCCAGAAACGTGAAGAGAAGACCTCGCCTTGATTTGCCAGATGACCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS CCA 90 bp | CTTACTGTAGGCTGCGATTGCACGATTGCACGCTGCACTCTAGCCTaGGAGAGCAGACAGGACTTTGTCTTCGTGTTGTTATTGTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: LTVGCDCTIARCTLA*ESRQDFVFVLLLLL Trigger: CAACAACAATAACAACACGAAGACAAAGTCCTGTCTGCTCTCCCAGGCTAGAGTGCAGCGTGCAATCGTGCAATCGCAGCCTACAGTAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000434223.3 ENST00000559232.2 ENST00000560819.1 ENST00000657585.1 |
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| CDS TCA 90 bp | CTGCAGGTCAGCCTGGATCGTGTCCAAATTGAGTTCCACCCCTGGTaGAAACCAATCTGTTTATGGGTACGCTTTTCTGATGTTACAGAA | + |
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Preference number: 5 (lower is better) Translates to: LQVSLDRVQIEFHPW*KPICLWVRFSDVTE Trigger: TTCTGTAACATCAGAAAAGCGTACCCATAAACAGATTGGTTTTCACCAGGGGTGGAACTCAATTTGGACACGATCCAGGCTGACCTGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000434223.3 ENST00000559232.2 ENST00000560198.1 ENST00000657585.1 |
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| CDS GCA 90 bp | CTGAATGGCTTGCCATTATTACATTTCCCTATTGGGCCAGCATACTaGCTCTTTGCAGTTTGCCAGATTTCGCCTAACCTCATCCACATT | + |
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Preference number: 5 (lower is better) Translates to: LNGLPLLHFPIGPAY*LFAVCQISPNLIHI Trigger: AATGTGGATGAGGTTAGGCGAAATCTGGCAAACTGCAAAGAGGCAGTATGCTGGCCCAATAGGGAAATGTAATAATGGCAAGCCATTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS TCA 90 bp | ACTGTAAGTTGTAATGCACTCTTGCAGTCTCCTCTTTGTACTTCTTaGAGCATTCCAACTCATAAGACATTAAGTTGCCCTGGCAACCTC | + |
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Preference number: 5 (lower is better) Translates to: TVSCNALLQSPLCTS*SIPTHKTLSCPGNL Trigger: GAGGTTGCCAGGGCAACTTAATGTCTTATGAGTTGGAATGCTTCAAGAAGTACAAAGAGGAGACTGCAAGAGTGCATTACAACTTACAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS CAA 90 bp | GCAGGGCCTGAGGCTCATTTCCATTCCTCTCGCATACAGCCTCTGTaGTGCGGGCCGGGCCTGCAGAGGGTAGCCGCGGCTGCCTACGAA | + |
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Preference number: 6 (lower is better) Translates to: AGPEAHFHSSRIQPL*CGPGLQRVAAAAYE Trigger: TTCGTAGGCAGCCGCGGCTACCCTCTGCAGGCCCGGCCCGCACAACAGAGGCTGTATGCGAGAGGAATGGAAATGAGCCTCAGGCCCTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS CCA 72 bp | AGAACGTCTGCGAGAGAGGGAGCTCAAGTTCCCGCCTaGTCTCTAAGTAACCCGGCCCACAAAGGTGCATAC | + |
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Preference number: 6 (lower is better) Translates to: RTSAREGAQVPA*SLSNPAHKGAY Trigger: GTATGCACCTTTGTGGGCCGGGTTACTTAGAGACCAGGCGGGAACTTGAGCTCCCTCTCTCGCAGACGTTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000559232.2 ENST00000560198.1 ENST00000657585.1 |
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| CDS CAA 90 bp | AACCGGAAGCTCCGTGTTTCCCCTCTGACTATGTGGCAGGCTGAGTaGAGCTCTTCGGGGCTGTCAGTTTGGAGATCTAAGCTGCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: NRKLRVSPLTMWQAE*SSSGLSVWRSKLLP Trigger: TGGGAGCAGCTTAGATCTCCAAACTGACAGCCCCGAAGAGCTCAACTCAGCCTGCCACATAGTCAGAGGGGAAACACGGAGCTTCCGGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS GCA 72 bp | CGCACCAAAGAGCCTTTCAAAGTAGGAACCCCGGCCTaGAGGTCAGCCTGGATCGTGTCCAAATTGAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: RTKEPFKVGTPA*RSAWIVSKLSS Trigger: GGAACTCAATTTGGACACGATCCAGGCTGACCTGCAGGCCGGGGTTCCTACTTTGAAAGGCTCTTTGGTGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000434223.3 ENST00000559232.2 ENST00000560198.1 ENST00000657585.1 |
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| CDS CCA 72 bp | CCTTTCAAAGTAGGAACCCCGGCCTGCAGGTCAGCCTaGATCGTGTCCAAATTGAGTTCCACCCCTGGTGAA | + |
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Preference number: 6 (lower is better) Translates to: PFKVGTPACRSA*IVSKLSSTPGE Trigger: TTCACCAGGGGTGGAACTCAATTTGGACACGATCCAGGCTGACCTGCAGGCCGGGGTTCCTACTTTGAAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000434223.3 ENST00000559232.2 ENST00000560198.1 ENST00000657585.1 |
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| CDS CAA 90 bp | GAGGATAGCTTGAGGCCAGGAATTCTACCTTACTGTAGGCTGCGATaGCACGATTGCACGCTGCACTCTAGCCTGGGAGAGCAGACAGGA | + |
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Preference number: 6 (lower is better) Translates to: EDSLRPGILPYCRLR*HDCTLHSSLGEQTG Trigger: TCCTGTCTGCTCTCCCAGGCTAGAGTGCAGCGTGCAATCGTGCAATCGCAGCCTACAGTAAGGTAGAATTCCTGGCCTCAAGCTATCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000434223.3 ENST00000560819.1 ENST00000657585.1 |
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| CDS CAA 90 bp | CGAGGTCTTCTCTTCACGTTTCTGGCTTCTTACTGTAGGCTGCGATaGCACGATTGCACGCTGCACTCTAGCCTGGGAGAGCAGACAGGA | + |
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Preference number: 6 (lower is better) Translates to: RGLLFTFLASYCRLR*HDCTLHSSLGEQTG Trigger: TCCTGTCTGCTCTCCCAGGCTAGAGTGCAGCGTGCAATCGTGCAATCGCAGCCTACAGTAAGAAGCCAGAAACGTGAAGAGAAGACCTCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS GCA 72 bp | TCTTCACGTTTCTGGCTTCTTACTGTAGGCTGCGATTaGACGATTGCACGCTGCACTCTAGCCTGGGAGAGC | + |
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Preference number: 6 (lower is better) Translates to: SSRFWLLTVGCD*TIARCTLAWES Trigger: GCTCTCCCAGGCTAGAGTGCAGCGTGCAATCGTGCAATCGCAGCCTACAGTAAGAAGCCAGAAACGTGAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS CAA 72 bp | CTCTTCACGTTTCTGGCTTCTTACTGTAGGCTGCGATaGCACGATTGCACGCTGCACTCTAGCCTGGGAGAG | + |
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Preference number: 6 (lower is better) Translates to: LFTFLASYCRLR*HDCTLHSSLGE Trigger: CTCTCCCAGGCTAGAGTGCAGCGTGCAATCGTGCAATCGCAGCCTACAGTAAGAAGCCAGAAACGTGAAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS CAA 72 bp | CTCCGTGTTTCCCCTCTGACTATGTGGCAGGCTGAGTaGAGCTCTTCGGGGCTGTCAGTTTGGAGATCTAAG | + |
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Preference number: 6 (lower is better) Translates to: LRVSPLTMWQAE*SSSGLSVWRSK Trigger: CTTAGATCTCCAAACTGACAGCCCCGAAGAGCTCAACTCAGCCTGCCACATAGTCAGAGGGGAAACACGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS GCA 72 bp | GTCTTCTCTTCACGTTTCTGGCTTCTTACTGTAGGCTaGGATTGCACGATTGCACGCTGCACTCTAGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: VFSSRFWLLTVG*DCTIARCTLAW Trigger: CCAGGCTAGAGTGCAGCGTGCAATCGTGCAATCGCAGCCTACAGTAAGAAGCCAGAAACGTGAAGAGAAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS GCA 72 bp | GTTTATGGGTACGCTTTTCTGATGTTACAGAACGTCTaGGAGAGAGGGAGCTCAAGTTCCCGCCTGGTCTCT | + |
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Preference number: 6 (lower is better) Translates to: VYGYAFLMLQNV*ERGSSSSRLVS Trigger: AGAGACCAGGCGGGAACTTGAGCTCCCTCTCTCGCAGACGTTCTGTAACATCAGAAAAGCGTACCCATAAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000434223.3 ENST00000559232.2 ENST00000560198.1 ENST00000657585.1 |
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| CDS GCA 72 bp | CCCTCCTCCCAGGCCTGCAATGAAATGCGCTTTAATTaGATCAAAGGGTTCTTCTCAATGGGGTTTCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: PSSQACNEMRFN*IKGFFSMGFQR Trigger: CCTCTGAAACCCCATTGAGAAGAACCCTTTGATGCAATTAAAGCGCATTTCATTGCAGGCCTGGGAGGAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000559232.2 ENST00000560198.1 ENST00000657585.1 |
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| CDS CCA 72 bp | CTGGCAAATCAAGGCGAGGTCTTCTCTTCACGTTTCTaGCTTCTTACTGTAGGCTGCGATTGCACGATTGCA | + |
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Preference number: 6 (lower is better) Translates to: LANQGEVFSSRF*LLTVGCDCTIA Trigger: TGCAATCGTGCAATCGCAGCCTACAGTAAGAAGCCAGAAACGTGAAGAGAAGACCTCGCCTTGATTTGCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS CAA 90 bp | CCAAACACAGGACAAATAAGTCTCCACCCTAACTTCTCCAGGAACTaGACTAAAAAGGCCAGGGGTCATCTGGCAAATCAAGGCGAGGTC | + |
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Preference number: 6 (lower is better) Translates to: PNTGQISLHPNFSRN*TKKARGHLANQGEV Trigger: GACCTCGCCTTGATTTGCCAGATGACCCCTGGCCTTTTTAGTCAAGTTCCTGGAGAAGTTAGGGTGGAGACTTATTTGTCCTGTGTTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS CCA 72 bp | TATTTGTTGAACCCTTATCAGGGCCAGGGACTGCTCTaGGCACAGGAGATACAGAATAAAAGACAGGTTTGG | + |
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Preference number: 6 (lower is better) Translates to: YLLNPYQGQGLL*AQEIQNKRQVW Trigger: CCAAACCTGTCTTTTATTCTGTATCTCCTGTGCCCAGAGCAGTCCCTGGCCCTGATAAGGGTTCAACAAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000434223.3 ENST00000560819.1 ENST00000657585.1 |
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| CDS CCA 72 bp | GGACCTGAATGGCTTGCCATTATTACATTTCCCTATTaGGCCAGCATACTGCCTCTTTGCAGTTTGCCAGAT | + |
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Preference number: 6 (lower is better) Translates to: GPEWLAIITFPY*ASILPLCSLPD Trigger: ATCTGGCAAACTGCAAAGAGGCAGTATGCTGGCCCAATAGGGAAATGTAATAATGGCAAGCCATTCAGGTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS TCA 72 bp | AGCCTGGATCGTGTCCAAATTGAGTTCCACCCCTGGTaGAAACCAATCTGTTTATGGGTACGCTTTTCTGAT | + |
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Preference number: 6 (lower is better) Translates to: SLDRVQIEFHPW*KPICLWVRFSD Trigger: ATCAGAAAAGCGTACCCATAAACAGATTGGTTTTCACCAGGGGTGGAACTCAATTTGGACACGATCCAGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000434223.3 ENST00000559232.2 ENST00000560198.1 ENST00000657585.1 |
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| CDS GCA 72 bp | TTGCCATTATTACATTTCCCTATTGGGCCAGCATACTaGCTCTTTGCAGTTTGCCAGATTTCGCCTAACCTC | + |
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Preference number: 6 (lower is better) Translates to: LPLLHFPIGPAY*LFAVCQISPNL Trigger: GAGGTTAGGCGAAATCTGGCAAACTGCAAAGAGGCAGTATGCTGGCCCAATAGGGAAATGTAATAATGGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS CAA 72 bp | TATCAAAATAGCTGTCCCATCGTCGTCCTTCAACACTaGCAGGTTACATCATTTTGCAGGTCTGGCTGTGAC | + |
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Preference number: 6 (lower is better) Translates to: YQNSCPIVVLQH*QVTSFCRSGCD Trigger: GTCACAGCCAGACCTGCAAAATGATGTAACCTGCAAGTGTTGAAGGACGACGATGGGACAGCTATTTTGATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000434223.3 ENST00000559232.2 ENST00000560198.1 ENST00000657585.1 |
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| CDS CAA 72 bp | GGACAAATAAGTCTCCACCCTAACTTCTCCAGGAACTaGACTAAAAAGGCCAGGGGTCATCTGGCAAATCAA | + |
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Preference number: 6 (lower is better) Translates to: GQISLHPNFSRN*TKKARGHLANQ Trigger: TTGATTTGCCAGATGACCCCTGGCCTTTTTAGTCAAGTTCCTGGAGAAGTTAGGGTGGAGACTTATTTGTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS CAA 72 bp | TATTACATTTCCCTATTGGGCCAGCATACTGCCTCTTaGCAGTTTGCCAGATTTCGCCTAACCTCATCCACA | + |
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Preference number: 6 (lower is better) Translates to: YYISLLGQHTAS*QFARFRLTSST Trigger: TGTGGATGAGGTTAGGCGAAATCTGGCAAACTGCAAAGAGGCAGTATGCTGGCCCAATAGGGAAATGTAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS CAA 90 bp | GCCTGGGAGAGCAGACAGGACTTTGTCTTCGTGTTGTTATTGTTGTaGTTGTTGTTTAAAGGTTCATGTTCTCAAGGAGGCATACACGGA | + |
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Preference number: 6 (lower is better) Translates to: AWESRQDFVFVLLLL*LLFKGSCSQGGIHG Trigger: TCCGTGTATGCCTCCTTGAGAACATGAACCTTTAAACAACAACAACAACAATAACAACACGAAGACAAAGTCCTGTCTGCTCTCCCAGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000434223.3 ENST00000559232.2 ENST00000657585.1 |
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| CDS CAA 90 bp | AAAGTGACACAAAGTCAACCAAATAGAGGTCCCAATAGGATCTTTTaGTTTACCGGAGTTCCAGACCCACATATCTTCCACCTGTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: KVTQSQPNRGPNRIF*FTGVPDPHIFHLCR Trigger: CCTGCACAGGTGGAAGATATGTGGGTCTGGAACTCCGGTAAACAAAAAGATCCTATTGGGACCTCTATTTGGTTGACTTTGTGTCACTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560819.1 |
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| CDS CAA 90 bp | GCTTGCCATTATTACATTTCCCTATTGGGCCAGCATACTGCCTCTTaGCAGTTTGCCAGATTTCGCCTAACCTCATCCACATTTAAAAGT | + |
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Preference number: 6 (lower is better) Translates to: ACHYYISLLGQHTAS*QFARFRLTSSTFKS Trigger: ACTTTTAAATGTGGATGAGGTTAGGCGAAATCTGGCAAACTGCAAAGAGGCAGTATGCTGGCCCAATAGGGAAATGTAATAATGGCAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000559232.2 |
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| CDS GCA 72 bp | AACTTACGCCTCGCCGAGGACCCCAAATACCTACCATaGTCTCCCTATTTCTTATTTAGATTTATAAGGAAC | + |
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Preference number: 6 (lower is better) Translates to: NLRLAEDPKYLP*SPYFLFRFIRN Trigger: GTTCCTTATAAATCTAAATAAGAAATAGGGAGAGCATGGTAGGTATTTGGGGTCCTCGGCGAGGCGTAAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657585.1 |
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| CDS CAA 72 bp | CAAAGTCAACCAAATAGAGGTCCCAATAGGATCTTTTaGTTTACCGGAGTTCCAGACCCACATATCTTCCAC | + |
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Preference number: 6 (lower is better) Translates to: QSQPNRGPNRIF*FTGVPDPHIFH Trigger: GTGGAAGATATGTGGGTCTGGAACTCCGGTAAACAAAAAGATCCTATTGGGACCTCTATTTGGTTGACTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000560819.1 |
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| CDS CAA 90 bp | GAGAGCAGACAGGACTTTGTCTTCGTGTTGTTATTGTTGTTGTTGTaGTTTAAAGGTTCATGTTCTCAAGGAGGCATACACGGAGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: ESRQDFVFVLLLLLL*FKGSCSQGGIHGVP Trigger: TGGAACTCCGTGTATGCCTCCTTGAGAACATGAACCTTTAAACAACAACAACAACAATAACAACACGAAGACAAAGTCCTGTCTGCTCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000434223.3 ENST00000559232.2 ENST00000657585.1 |
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| CDS CAA 72 bp | TCAGAGAGGCTATGTGGATTTTCTGAGGTCACACAGTaGTCTCAATGGAAAAAGCAGGGAAATGTTATAAAA | + |
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Preference number: 6 (lower is better) Translates to: SERLCGFSEVTQ*SQWKKQGNVIK Trigger: TTTTATAACATTTCCCTGCTTTTTCCATTGAGACAACTGTGTGACCTCAGAAAATCCACATAGCCTCTCTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000434223.3 ENST00000559232.2 ENST00000560198.1 ENST00000657585.1 |
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