Pregenerated sensors for LINC01848 (Homo sapiens)
Ensembl gene IDs: ENSG00000254106Ensembl transcript IDs: ENST00000523446.1
Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGGGGTGAAATGAGTCTGCAGAGGTGGTGTGAGCTTCGACCTTCATaGTGGTCTCAACGGGGAGGCGATAGGAGGTTGCTGGAATTGGTT | + |
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Preference number: 5 (lower is better) Translates to: RGEMSLQRWCELRPS*WSQRGGDRRLLELV Trigger: AACCAATTCCAGCAACCTCCTATCGCCTCCCCGTTGAGACCAGCATGAAGGTCGAAGCTCACACCACCTCTGCAGACTCATTTCACCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000523446.1 |
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| CDS GCA 90 bp | TTTTCCTTCCCTCCGTCCTCCTGTACAGGCTGCATTGCAGTTACGTaGTGTTCTCGAGGAGGCAACAGACAAGTAGAAATCCCTCAAATG | + |
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Preference number: 5 (lower is better) Translates to: FSFPPSSCTGCIAVT*CSRGGNRQVEIPQM Trigger: CATTTGAGGGATTTCTACTTGTCTGTTGCCTCCTCGAGAACAGCACGTAACTGCAATGCAGCCTGTACAGGAGGACGGAGGGAAGGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000523446.1 |
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| CDS GCA 72 bp | ATGAGTCTGCAGAGGTGGTGTGAGCTTCGACCTTCATaGTGGTCTCAACGGGGAGGCGATAGGAGGTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: MSLQRWCELRPS*WSQRGGDRRLL Trigger: CAGCAACCTCCTATCGCCTCCCCGTTGAGACCAGCATGAAGGTCGAAGCTCACACCACCTCTGCAGACTCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000523446.1 |
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| CDS GCA 72 bp | TCTGGCTTTTCCTTCCCTCCGTCCTCCTGTACAGGCTaGATTGCAGTTACGTGCTGTTCTCGAGGAGGCAAC | + |
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Preference number: 6 (lower is better) Translates to: SGFSFPPSSCTG*IAVTCCSRGGN Trigger: GTTGCCTCCTCGAGAACAGCACGTAACTGCAATGCAGCCTGTACAGGAGGACGGAGGGAAGGAAAAGCCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000523446.1 |
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| CDS GCA 72 bp | CTTTTCCTTCCCTCCGTCCTCCTGTACAGGCTGCATTaGAGTTACGTGCTGTTCTCGAGGAGGCAACAGACA | + |
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Preference number: 6 (lower is better) Translates to: LFLPSVLLYRLH*SYVLFSRRQQT Trigger: TGTCTGTTGCCTCCTCGAGAACAGCACGTAACTGCAATGCAGCCTGTACAGGAGGACGGAGGGAAGGAAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000523446.1 |
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| CDS GCA 72 bp | CCTCCGTCCTCCTGTACAGGCTGCATTGCAGTTACGTaGTGTTCTCGAGGAGGCAACAGACAAGTAGAAATC | + |
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Preference number: 6 (lower is better) Translates to: PPSSCTGCIAVT*CSRGGNRQVEI Trigger: GATTTCTACTTGTCTGTTGCCTCCTCGAGAACAGCACGTAACTGCAATGCAGCCTGTACAGGAGGACGGAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000523446.1 |
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| CDS CAA 72 bp | ACAAGTAGAAATCCCTCAAATGCTGCGTTTGGGTATTaGTTTCTGGCCCGGGCAACCACACAGGTGACCGTA | + |
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Preference number: 6 (lower is better) Translates to: TSRNPSNAAFGY*FLARATTQVTV Trigger: TACGGTCACCTGTGTGGTTGCCCGGGCCAGAAACAAATACCCAAACGCAGCATTTGAGGGATTTCTACTTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000523446.1 |
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| CDS CCA 72 bp | GGTCTCAACGGGGAGGCGATAGGAGGTTGCTGGAATTaGTTAACAAGGATTCCAGTCATCATAGCATATTAT | + |
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Preference number: 6 (lower is better) Translates to: GLNGEAIGGCWN*LTRIPVIIAYY Trigger: ATAATATGCTATGATGACTGGAATCCTTGTTAACCAATTCCAGCAACCTCCTATCGCCTCCCCGTTGAGACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000523446.1 |
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